BAC Information

Click to search

BAC

Clone NameB6Ng01-114G11
Chromosome1 (Build37)
Map Location 45,560,336 - 45,730,463
singlet/doubletdoublet
Overlap geneEG666799, LOC631429, LOC666814
Upstream geneGulp1, LOC100041738, LOC100041752, LOC383640, Col3a1, Col5a2
Downstream geneEG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114G11.bB6Ng01-114G11.g
ACCDH919931DH919932
length1,0971,191
definitionDH919931|Mus musculus domesticus DNA, BAC clone: B6Ng01-114G11, 5' end.DH919932|Mus musculus domesticus DNA, BAC clone: B6Ng01-114G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,729,363 - 45,730,463)(45,560,336 - 45,561,553)
sequence
gaattcatttatcattctgcatttttataaactttgaaccgaactccttt
ttctttcatatcttttgctctacagaattgagtcacattgaacattttat
actggcagttattattttaaatgtgatgtctgattcaaaccttatgttca
ttagctttcagaaaagtaaaaaaaaaaaaaaaaaaaaatgcccgagggtc
agcagatgttgaaggacgtaggtagacagataattaggaagtggttttct
aagtaagggttaccctaaaattttatgcacactctcctttgatctttgga
cttttttctctttggcctgcgtatgatgctggaatccactgtagctggca
atggtttaattaatccttttcacggaaaagttcatgtttgctaacaacta
cagaattcatttgaatttacttagctaaaggggaacatgatgaagaacga
tagagtgaggtctttgtctcatcacttacaactcagcctccactgttttt
gtttgttttagttacattttcaaacattcccattttcccatgttctgtgc
tcgccttgggaaaccttctaatagcataaacgacaaacaggagttcctgc
ctgctgactcatcagttcggtttggcaggactctacttgcaaatgctgca
gcaggccactttcagagtaagtccctggcagcagatgtcactgttggtct
gtctaactctggggcctttcctcactagtggagctcatgagcctgaccta
gtcaagcctatatttcaggagcatggtttttatgaaacatttaatagtgg
ctcgtgggactgatttaagagtcaatgtctcgatcttgtttcattacaca
gtatttaaatactgttatttttcacttttgcttcctatgtctggggaatc
aaattcagtacctttgcattgctaggcaaacattctgccactgacttata
cctgcacccttgttaatttgagactgagtttcactgtgcattccaaattg
tctgaaatctggctcagccttgtgagtgttggtttccattgttgcaacac
aagcttcaattttaatagatgaatcctttctattaccttgaaagttt
gaattctctttgccacttaagcctttaaaacgtcacttttttaacccttt
cttttggcaatggaggaaggattcttgtcccaattttcatcctcctccct
ctcctatgctctgagaagattgtggaagaaaggaggcagaatatggccaa
tacaaaatgaacttgagatactttacattgagttatttccacatcttttt
agtaggcacatctatacgttctcctcgtcacagagcatgctattgtgtta
aaaaacaaatatgttcactaagcttgtggagggaggaaaacacactggtt
taagtctcagaaagggtaggttccaatatcagatctgccaactcaccaat
tttgtgaatttatacatagtccttaactgtccaaatttttttgttgttgt
tgttagaaaaggggctttggcctgaccagtgtgcaggatctggtgacact
aaactgagcaatatgctgttaactagattctaaattacaaagagctacat
aaaagtgaatgatgctgttatgaaccccacaccagctttccacggaatgt
ggtagtcctagctgcatatttctgtaaagagcaaggcattaactttgtgt
gctactcaagcttgacagatttaaacgccctcagtgtttttgacagtcta
attcatttgatagtgtgcgttctgggggatctggatcaagccccacataa
catgtcatgtgtgactcaattgttcatagttactcagcactgaacaggtg
ctctgagacacactgaatagaggaaggattatggcagactagaaacaaag
tcagcatccatcacctttaaggaacatgtgtatgcaaatgctgaaaaata
tatctacgtgaaacaaaaaatacaaacaatatatacagctatgtgtggaa
ttaactaaaccccaaataaatgcaaagaaaagggatagtataaattaaat
agtatatgagcttcatttactatttaatttccttaataaagaattccaag
atgctttaaatgaagagtggaactaactctgaagaattcccaaacaactt
tctagcctgatcaattgaaataactttcaccaagacctgccttgttatga
aatccgtaacaaacacatgctgttctcatggctgtcttgcctaactatga
tgtcaataaagagaaacaaatcaatctctattctttgaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_45729363_45730463
seq2: B6Ng01-114G11.b_35_1131 (reverse)

seq1  AAACATTTCAAGTTAATAGAAAAGAT--CTCTATTAAAAATGGAGGCTAG  48
      |||| ||||||| ||||||||| |||   |||||| ||||| || ||| |
seq2  AAAC-TTTCAAGGTAATAGAAAGGATTCATCTATT-AAAATTGAAGCTTG  48

seq1  TGTTGCACATATGTAACCCCAACACTCACAAGGCTGAGCCAAGATTTCAA  98
      |||||||   ||| ||  |||||||||||||||||||||| ||||||| |
seq2  TGTTGCAACAATGGAA-ACCAACACTCACAAGGCTGAGCC-AGATTTC-A  95

seq1  GACCAATCTGGAATGCACAGTGAAACTCAGTCTCAAAATAAACAAGGGTG  148
      || |||| |||||||||||||||||||||||||| |||| ||||||||||
seq2  GA-CAATTTGGAATGCACAGTGAAACTCAGTCTC-AAATTAACAAGGGTG  143

seq1  CAGGGTATAAGTCAGTGGCAGAATGTTTGCCTAGC-ATGCAAGGGTACTG  197
      || |||||||||||||||||||||||||||||||| |||||| |||||||
seq2  CA-GGTATAAGTCAGTGGCAGAATGTTTGCCTAGCAATGCAAAGGTACTG  192

seq1  AATTTGATTCCCCAGAACATAGGAAGCAAAAGTGAAAAATAACAGTATTT  247
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATTTGATTCCCCAG-ACATAGGAAGCAAAAGTGAAAAATAACAGTATTT  241

seq1  AAAATACTGTGTAATGAAACAAGATCGAGACA-TGACTCTTAAATCAGTC  296
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  -AAATACTGTGTAATGAAACAAGATCGAGACATTGACTCTTAAATCAGTC  290

seq1  CCACGAGCCACTATTAAATGTTTCAT-AAAACCATGCTCCCTGAAATATA  345
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  CCACGAGCCACTATTAAATGTTTCATAAAAACCATGCT-CCTGAAATATA  339

seq1  GGCTTGACTAGGTCAGGCTCATGAGCTCCACTAGTGAGGAAAGGCCCCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGACTAGGTCAGGCTCATGAGCTCCACTAGTGAGGAAAGGCCCCAG  389

seq1  AGTTAGACAGACCAACAGTGACATCTGCTGCCAGGGACTTACTCTGAAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGACAGACCAACAGTGACATCTGCTGCCAGGGACTTACTCTGAAAG  439

seq1  TGGCCTGCTGCAGCATTTGCAAGTAGAGTCCTGCCAAACCGAACTGATGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGCTGCAGCATTTGCAAGTAGAGTCCTGCCAAACCGAACTGATGA  489

seq1  GTCAGCAGGCAGGAACTCCTGTTTGTCGTTTATGCTATTAGAAGGTTTCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAGGCAGGAACTCCTGTTTGTCGTTTATGCTATTAGAAGGTTTCC  539

seq1  CAAGGCGAGCACAGAACATGGGAAAATGGGAATGTTTGAAAATGTAACTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCGAGCACAGAACATGGGAAAATGGGAATGTTTGAAAATGTAACTA  589

seq1  AAACAAACAAAAACAGTGGAGGCTGAGTTGTAAGTGATGAGACAAAGACC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAAAACAGTGGAGGCTGAGTTGTAAGTGATGAGACAAAGACC  639

seq1  TCACTCTATCGTTCTTCATCATGTTCCCCTTTAGCTAAGTAAATTCAAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTATCGTTCTTCATCATGTTCCCCTTTAGCTAAGTAAATTCAAAT  689

seq1  GAATTCTGTAGTTGTTAGCAAACATGAACTTTTCCGTGAAAAGGATTAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGTTGTTAGCAAACATGAACTTTTCCGTGAAAAGGATTAAT  739

seq1  TAAACCATTGCCAGCTACAGTGGATTCCAGCATCATACGCAGGCCAAAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATTGCCAGCTACAGTGGATTCCAGCATCATACGCAGGCCAAAGA  789

seq1  GAAAAAAGTCCAAAGATCAAAGGAGAGTGTGCATAAAATTTTAGGGTAAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGTCCAAAGATCAAAGGAGAGTGTGCATAAAATTTTAGGGTAAC  839

seq1  CCTTACTTAGAAAACCACTTCCTAATTATCTGTCTACCTACGTCCTTCAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTTAGAAAACCACTTCCTAATTATCTGTCTACCTACGTCCTTCAA  889

seq1  CATCTGCTGACCCTCGGGCATTTTTTTTTTTTTTTTTTTTTACTTTTCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTGACCCTCGGGCATTTTTTTTTTTTTTTTTTTTTACTTTTCTG  939

seq1  AAAGCTAATGAACATAAGGTTTGAATCAGACATCACATTTAAAATAATAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAATGAACATAAGGTTTGAATCAGACATCACATTTAAAATAATAA  989

seq1  CTGCCAGTATAAAATGTTCAATGTGACTCAATTCTGTAGAGCAAAAGATA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTATAAAATGTTCAATGTGACTCAATTCTGTAGAGCAAAAGATA  1039

seq1  TGAAAGAAAAAGGAGTTCGGTTC-TCGTTTATAAAAATGCAGAATGAT-A  1093
      |||||||||||||||||||||||   |||||||||||||||||||||| |
seq2  TGAAAGAAAAAGGAGTTCGGTTCAAAGTTTATAAAAATGCAGAATGATAA  1089

seq1  ATGAATTC  1101
      ||||||||
seq2  ATGAATTC  1097

seq1: chr1_45560336_45561553
seq2: B6Ng01-114G11.g_67_1257

seq1  GAATTCTCTTTGCCACTTAAGCCTTTAAAACGTCACTTTTTTAACCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGCCACTTAAGCCTTTAAAACGTCACTTTTTTAACCCTTT  50

seq1  CTTTTGGCAATGGAGGAAGGATTCTTGTCCCAATTTTCATCCTCCTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGCAATGGAGGAAGGATTCTTGTCCCAATTTTCATCCTCCTCCCT  100

seq1  CTCCTATGCTCTGAGAAGATTGTGGAAGAAAGGAGGCAGAATATGGCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATGCTCTGAGAAGATTGTGGAAGAAAGGAGGCAGAATATGGCCAA  150

seq1  TACAAAATGAACTTGAGATACTTTACATTGAGTTATTTCCACATCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATGAACTTGAGATACTTTACATTGAGTTATTTCCACATCTTTTT  200

seq1  AGTAGGCACATCTATACGTTCTCCTCGTCACAGAGCATGCTATTGTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCACATCTATACGTTCTCCTCGTCACAGAGCATGCTATTGTGTTA  250

seq1  AAAAACAAATATGTTCACTAAGCTTGTGGAGGGAGGAAAACACACTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAATATGTTCACTAAGCTTGTGGAGGGAGGAAAACACACTGGTT  300

seq1  TAAGTCTCAGAAAGGGTAGGTTCCAATATCAGATCTGCCAACTCACCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTCAGAAAGGGTAGGTTCCAATATCAGATCTGCCAACTCACCAAT  350

seq1  TTTGTGAATTTATACATAGTCCTTAACTGTCCAAATTTTTTTGTTGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAATTTATACATAGTCCTTAACTGTCCAAATTTTTTTGTTGTTGT  400

seq1  TGTTAGAAAAGGGGCTTTGGCCTGACCAGTGTGCAGGATCTGGTGACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAAAAGGGGCTTTGGCCTGACCAGTGTGCAGGATCTGGTGACACT  450

seq1  AAACTGAGCAATATGCTGTTAACTAGATTCTAAATTACAAAGAGCTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGCAATATGCTGTTAACTAGATTCTAAATTACAAAGAGCTACAT  500

seq1  AAAAGTGAATGATGCTGTTATGAACCCCACACCAGCTTTCCACGGAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGAATGATGCTGTTATGAACCCCACACCAGCTTTCCACGGAATGT  550

seq1  GGTAGTCCTAGCTGCATATTTCTGTAAAGAGCAAGGCATTAACTTTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCCTAGCTGCATATTTCTGTAAAGAGCAAGGCATTAACTTTGTGT  600

seq1  GCTACTCAAGCTTGACAGATTTAAACGCCCTCAGTGTTTTTGACAGTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCAAGCTTGACAGATTTAAACGCCCTCAGTGTTTTTGACAGTCTA  650

seq1  ATTCATTTGATAGTGTGCGTTCTGGGGGATCTGGATCAAGCCCCACATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTGATAGTGTGCGTTCTGGGGGATCTGGATCAAGCCCCACATAA  700

seq1  CATGTCATGTGTGACTCAATTGTTCATAGTTACTCAGCACTGAACAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCATGTGTGACTCAATTGTTCATAGTTACTCAGCACTGAACAGGTG  750

seq1  CTCTGAGACACACTGAATAGAGGAAGGATTATGGCAGACTAGAAACAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGACACACTGAATAGAGGAAGGATTATGGCAGACTAGAAACAAAG  800

seq1  TCAGCATCCATCACCTTTAAGGAACATGTGTATGCAAATGCTGAAAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCAGCATCCATCACCTTTAAGGAACATGTGTATGCAAATGCTG-AAAAAT  849

seq1  ATATCTACGTGAAACAAAAAAATACAAACAATATATACAGCTATGTGTGG  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATATCTACGTGAAAC-AAAAAATACAAACAATATATACAGCTATGTGTGG  898

seq1  AATTAACTAAACCCCAAATAAATGCAAAGAAAAGGGATAGTATAAATTAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATTAACTAAACCCCAAATAAATGCAAAGAAAAGGGATAGTATAAATT-A  947

seq1  AATAGGTATATGAGGCTTCATTTACTATTTAATTTCCTTAATAAAGAAAT  1000
      |||| |||||||| |||||||||||||||||||||||||||||||||| |
seq2  AATA-GTATATGA-GCTTCATTTACTATTTAATTTCCTTAATAAAGAATT  995

seq1  CCAAGATGCTTTAAATTGAGAGGTGGAACTAAACTCTGGAGAAGTTCCAA  1050
      ||||||||||||||||  ||| |||||||| ||||||| |||| | ||  
seq2  CCAAGATGCTTTAAATGAAGA-GTGGAACT-AACTCTGAAGAATTCCC--  1041

seq1  AAACAACTTTCTAGCCCTGTATCATTGAAAATAACTTGTCACCAAGACCT  1100
      |||||||||||||| |||| |||| |  ||||||||| ||||||||||||
seq2  AAACAACTTTCTAG-CCTG-ATCAATTGAAATAACTT-TCACCAAGACCT  1088

seq1  GCCTTTGTTTAGTGAATTCGTTCACCAACACACTGCTGTTCCCATGGCTG  1150
      ||| |||||   |||| ||  | || |||||| |||||||| ||||||||
seq2  GCC-TTGTT--ATGAAATCCGTAACAAACACA-TGCTGTTCTCATGGCTG  1134

seq1  TCTTGCTCATACTTAATGAATGGGCTAAATAAGGA-ACAAAAATCAAATT  1199
      |||||| |  |||  ||| |||   | ||||| || | | ||||| ||| 
seq2  TCTTGC-CTAACT--ATG-ATG---TCAATAAAGAGAAACAAATC-AATC  1176

seq1  TCTTCTAATTCTTTGAATA  1218
      |||    ||||||||||||
seq2  TCT----ATTCTTTGAATA  1191