BAC Information

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BAC

Clone NameB6Ng01-114J23
Chromosome1 (Build37)
Map Location 80,395,432 - 80,540,037
singlet/doubletdoublet
Overlap gene1700016L21Rik, Dock10
Upstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899
Downstream geneLOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114J23.bB6Ng01-114J23.g
ACCDH920099DH920100
length680396
definitionDH920099|Mus musculus domesticus DNA, BAC clone: B6Ng01-114J23, 5' end.DH920100|Mus musculus domesticus DNA, BAC clone: B6Ng01-114J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,395,432 - 80,396,111)(80,539,121 - 80,540,037)
sequence
gaattcactttgtagaccaggctggccttgaactcagaaatctgcctgcc
tctgcctcccgagtgctgggattaaaggcgtgtgtcaccacgtccagcta
tttcttcttgacaatttttcttagaatttctgatcctagaagagttctga
gaatttatatcaaacactgcactaaaaatggcttcttgtccatgcttctg
tttacatttttctaacattacatgatattatttgttaattttttcttaga
tttcctatgaaggtatctctggtgcttttttcttgtattattatatattt
gctcttaatacttctagatttgtggactcacattgcctaacgtttgctga
gctgctactgtaagctggggtctttctgaactggagatgaccaccctcgt
ttaactggtagcagttaactcggagtgagggcctaagaggttgcaagagt
gttgttgggagtcagtaagttaggaggaactgaattctagccatttttaa
tgatggaaaaatatatctaaagtaggtatcatagatccttatggtacacg
aatcccaggattttaattagatgataagtgatctgcttcacaccagctgt
ctcctaaaagcccagagtgatttaagcatttttgggtttttgttttgttt
tgttttgttttgttttgttttgttttgttt
gaattcttctccgagaagttggctttgccctgcaggaggaccaagacatc
aggcacttagctttagctgtcctaaaaaatctaatggctaagcattcttt
cgatgatcgatacagggaacctgtaagtcgcctttctttctctctccccc
aaacaccgtttaatggcccactgcattaaatgaatatgaaacccctgagc
ctattgattttcacgtgaatcatttctcttgtctgccttcacctagagga
agcaggcacagatagcgagtctgtacatgccgctctatggtatgctcctg
gacaatatgccaagaatctacctgaaggacctgtatcctttcaccgtgaa
cacatccaatcaggtacctttgcgcagttctccaagtttccatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80395432_80396111
seq2: B6Ng01-114J23.b_41_720

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCC  50

seq1  TCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGTCACCACGTCCAGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGTCACCACGTCCAGCTA  100

seq1  TTTCTTCTTGACAATTTTTCTTAGAATTTCTGATCCTAGAAGAGTTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTGACAATTTTTCTTAGAATTTCTGATCCTAGAAGAGTTCTGA  150

seq1  GAATTTATATCAAACACTGCACTAAAAATGGCTTCTTGTCCATGCTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATATCAAACACTGCACTAAAAATGGCTTCTTGTCCATGCTTCTG  200

seq1  TTTACATTTTTCTAACATTACATGATATTATTTGTTAATTTTTTCTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTTTCTAACATTACATGATATTATTTGTTAATTTTTTCTTAGA  250

seq1  TTTCCTATGAAGGTATCTCTGGTGCTTTTTTCTTGTATTATTATATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATGAAGGTATCTCTGGTGCTTTTTTCTTGTATTATTATATATTT  300

seq1  GCTCTTAATACTTCTAGATTTGTGGACTCACATTGCCTAACGTTTGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAATACTTCTAGATTTGTGGACTCACATTGCCTAACGTTTGCTGA  350

seq1  GCTGCTACTGTAAGCTGGGGTCTTTCTGAACTGGAGATGACCACCCTCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTACTGTAAGCTGGGGTCTTTCTGAACTGGAGATGACCACCCTCGT  400

seq1  TTAACTGGTAGCAGTTAACTCGGAGTGAGGGCCTAAGAGGTTGCAAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGGTAGCAGTTAACTCGGAGTGAGGGCCTAAGAGGTTGCAAGAGT  450

seq1  GTTGTTGGGAGTCAGTAAGTTAGGAGGAACTGAATTCTAGCCATTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGGGAGTCAGTAAGTTAGGAGGAACTGAATTCTAGCCATTTTTAA  500

seq1  TGATGGAAAAATATATCTAAAGTAGGTATCATAGATCCTTATGGTACACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAAAAATATATCTAAAGTAGGTATCATAGATCCTTATGGTACACG  550

seq1  AATCCCAGGATTTTAATTAGATGATAAGTGATCTGCTTCACACCAGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGGATTTTAATTAGATGATAAGTGATCTGCTTCACACCAGCTGT  600

seq1  CTCCTAAAAGCCCAGAGTGATTTAAGCATTTTTGGGTTTTTGTTTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAAAGCCCAGAGTGATTTAAGCATTTTTGGGTTTTTGTTTTGTTT  650

seq1  TGTTTTGTTTTGTTTTGTTTTGTTTTGTTT  680
      ||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTGTTTTGTTTTGTTT  680

seq1: chr1_80539121_80540037
seq2: B6Ng01-114J23.g_68_1012 (reverse)

seq1  AGCCCTAGGGAATTCTCTGTCTACC-TTCTCCGTGTTGAGAT-AATAGAT  48
      |||||||| ||||| |||||||||| |||||||||||||||| |||||||
seq2  AGCCCTAGAGAATT-TCTGTCTACCTTTCTCCGTGTTGAGATAAATAGAT  49

seq1  TCATGTCACA-CACACAGCCTTTTACAGAGGTGCTGGGG-ATCAAAG-TC  95
       || |||||| |||||||||||||  ||| ||| ||||| ||||||| ||
seq2  CCA-GTCACACCACACAGCCTTTTCAAGAAGTGGTGGGGAATCAAAGTTC  98

seq1  AAGTCCTCATGCTTG-CAAAC-ACTTTACCAACTAAA-CCATCTCTGAG-  141
      |||||  |||||||| ||||| ||||||||||||||| ||||||||||| 
seq2  AAGTCTCCATGCTTGCCAAACAACTTTACCAACTAAACCCATCTCTGAGG  148

seq1  --TCCCTTGAATAGTTTT--CTAT-ACTGCC--ACCATACTGGCTGCGTG  184
         ||||  |||||||||  |||| ||||||   |||||||| |||||||
seq2  TCCCCCTGAAATAGTTTTTCCTATAACTGCCCACCCATACTGACTGCGTG  198

seq1  GAC--AATTGTCACAACGGG--CCACACTGGGC-TTTTGA-CCATATGAA  228
      |||  | |||||||||||||  ||||||||||| |||||| |||||||||
seq2  GACCAATTTGTCACAACGGGGCCCACACTGGGCTTTTTGACCCATATGAA  248

seq1  A-CACTTAA-TTTCCATGGGGAAAAATGGGGAGC-AGTTGGCGAAGAATG  275
      | ||||||| |||||||||||||||||||| ||| |||||   |||||||
seq2  ACCACTTAATTTTCCATGGGGAAAAATGGGAAGCAAGTTGCGAAAGAATG  298

seq1  AACATTG-AAGCTAAGGCCATGGGAATATCATACAATCTGCAG-AAGCTG  323
      ||||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  AACATTGAAAGCTAAGGCCATGGGAATATCATACAATCTGCAGAAAGCTG  348

seq1  TGC-AGATGTGAAGAGTGCTTCAGAGAATAAAAAAGAATG-AAAACAGTT  371
      ||| |||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCAAGATGTGAAGAGTGCTTCAGAGAATAAAAAAGAATGAAAAACAGTT  398

seq1  CCAAAGAGAGGGACGGGCAAGGGGGGAAGCTGTGAGGACAAGCTGTATTG  421
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGAGGGACGGGCAAGGGGGGAAGCTGTGAGGACAAGCTGTATTG  448

seq1  ATCGAGCGTTTGTTGGAAATTGTTTAACCCTAGCTTGCTTACAAGGAGG-  470
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCGAGCGTTTGTTGGAAATTGTTTAACCCTAGCTTGCTTACAAGGAGGA  498

seq1  AAGAAATGGTTATACAACCCATAAATATATAAATAAGAGGAATTACTTAA  520
      || |||||||||||||||||||||||||||||||                
seq2  AAAAAATGGTTATACAACCCATAAATATATAAATNNNNNNNNNNNNNNNN  548

seq1  GGAAATGGAAACTTGGAGAACTGCGCAAAGGTACCTGATTGGATGTGTTC  570
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  NGAAATGGAAACTTGGAGAACTGCGCAAAGGTACCTGATTGGATGTGTTC  598

seq1  ACGGTGAAAGGATACAGGTCCTTCAGGTAGATTCTTGGCATATTGTCCAG  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGAAAGGATACAGGTCCTTCAGGTAGATTCTTGGCATATTGTCCAG  648

seq1  GAGCATACCATAGAGCGGCATGTACAGACTCGCTATCTGTGCCTGCTTCC  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATACCATAGAGCGGCATGTACAGACTCGCTATCTGTGCCTGCTTCC  698

seq1  TCTAGGTGAAGGCAGACAAGAGAAATGATTCACGTGAAAATCAATAGGCT  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTGAAGGCAGACAAGAGAAATGATTCACGTGAAAATCAATAGGCT  748

seq1  CAGGGGTTTCATATTCATTTAATGCAGTGGGCCATTAAACGGTGTTTGGG  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTTTCATATTCATTTAATGCAGTGGGCCATTAAACGGTGTTTGGG  798

seq1  GGAGAGAGAAAGAAAGGCGACTTACAGGTTCCCTGTATCGATCATCGAAA  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGAAAGAAAGGCGACTTACAGGTTCCCTGTATCGATCATCGAAA  848

seq1  GAATGCTTAGCCATTAGATTTTTTAGGACAGCTAAAGCTAAGTGCCTGAT  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTAGCCATTAGATTTTTTAGGACAGCTAAAGCTAAGTGCCTGAT  898

seq1  GTCTTGGTCCTCCTGCAGGGCAAAGCCAACTTCTCGGAGAAGAATTC  917
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTCCTCCTGCAGGGCAAAGCCAACTTCTCGGAGAAGAATTC  945