BAC Information

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BAC

Clone NameB6Ng01-114M02
Chromosome1 (Build37)
Map Location 50,433,704 - 50,434,893
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627430, LOC100041981, EG666962, EG666970
Downstream geneLOC100041993, Tmeff2, Sdpr, LOC383504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114M02.bB6Ng01-114M02.g
ACCDH920194DH920195
length6431,172
definitionDH920194|Mus musculus domesticus DNA, BAC clone: B6Ng01-114M02, 5' end.DH920195|Mus musculus domesticus DNA, BAC clone: B6Ng01-114M02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaatagaagaaacttaaaatacttatccattgcgggtatgatc
acaaagttttatagtcactaggaaaatcaatctgatgtttcttgggaaga
tgagaatcaatcaacctcaagctctaccacactaagacatatactcaaaa
gatgtttcattctactacagagacactagctcatccatgttcattgttgc
cctatcataatagcaagaaattgtaaacaacattgtccctatttaccctt
caacacaagtacagattaagaaaatctgattcatggtacatttactcaat
ggagtaatacttagctattaaaaataagaagaaagaaatcctgaaaattt
cagttaagtaaattgagttaccaaaaatgtcatcctgagtgaggtaatcc
agagccagaaagataaatatggtatgaatttacctatatgatatatgcgt
attatttttaaactcaatgataaccaagctacaagccatagaaccacaca
gattaagtatagcttaagcgacaaatgggggatagatagaacttgttaga
aaagagaaatcgagtaaatagtctggttgcattgggaggaacttgaaagg
gagtatatgttggagaagggaagagatggtgggaataggggaa

gaattccctttaattttgagttgtggcttggccgaagtgaagcacaatta
aagggtttaaggtaacttaactgccatagccacaatatgctaatgacagg
agctatataaattaacccattgtttttccacttaacttgtcttacatatt
actattaattgaataatgatcattatggaaatatttcttattttagttat
taactccataaagcctattgctgatttcttttttattgtatagtagataa
caattttattaattttttctttatttttattttaaaattagctttacact
ttatgtatgctaggtttacctcataatcgatatcagtaggatgactttga
ctctctgatcctcatgtctttatgctccttcctgtgatgggattacaggc
attttctagcacactaggtttatgcactgctagggaatgaacccacagct
ttaatgcatacaactaagcattctaacaacctggcttcatctctagcctc
ttctctatactttaaactacaatggatatacattgaattatgtggttgtt
actatgtatcaaaagaccggtgttctctctgtagtcctaccactaactac
tgcttgtagtgcttcatattttggttctatgtccacatttgtgctatcgc
atctattttatttttctactcaaaattttgatttatttaatagcatgtcc
ttatttttgtctctaatttggatattgtctatttgtctctaaataatgaa
tgtaggatcttgagcaaaatgattgttttcagtgttttctctgaatttta
ttgactttctgtaacttgtcacctttttaagctcatgattgctcttttgt
ttgagacagctggatgcacctaattgtgtatgtactggattttattcttt
aaaattaccatctcactttagtgagattaacaattgaaaatgggacctca
taaaactgaaatgcttctgtaaggcaaggacattgtcatagccataatgc
agcctacacatgagaacaaggtccaccaacctacatcttgacatgtttag
tttaaaaatttataggactcagagtagaatactaatattgccaacgagag
attctcacatggaatcctcaactgacagaggagagcacatgatggcaagc
tctactcatcagacaatgaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50433704_50434893
seq2: B6Ng01-114M02.g_66_1237 (reverse)

seq1  ATTTCATTTGTCTGATGAGTAAGGAGTTTGTCCATTTTCATGTG--CTTC  48
      |||||| ||||||||||||||  ||| ||| |||   |||||||  || |
seq2  ATTTCA-TTGTCTGATGAGTA--GAGCTTG-CCA---TCATGTGCTCTCC  43

seq1  TTGGTCAGTTGA-GATTCCATTGTTGAGAATTCTCT-GTTGGCATATTTG  96
      |  ||||||||| ||||||||   |||||| ||||| |||||||   || 
seq2  TCTGTCAGTTGAGGATTCCAT--GTGAGAA-TCTCTCGTTGGCAATATTA  90

seq1  GTATCTAACTTCTTGAGTTCCTTATAAATTTTTTAAACTAACACTGTC-A  145
      ||||   |||   |||||  | |||||| ||||||||||||   |||| |
seq2  GTATTCTACT--CTGAGT--CCTATAAA-TTTTTAAACTAAACATGTCAA  135

seq1  GATGTAGGGTTGGTGGACCTTTGTTCTCAATGTGTAGGCTGCCATTATGG  195
      |||||| |||||||||||| |||||||| |||||||||||| ||||||||
seq2  GATGTA-GGTTGGTGGACC-TTGTTCTC-ATGTGTAGGCTG-CATTATGG  181

seq1  CCTATTGACAATGTCCTTTGCCTTACAGAAGCATTTCAGTTTTATGAGGT  245
       ||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  -CTA-TGACAATGTCC-TTGCCTTACAGAAGCATTTCAGTTTTATGAGGT  228

seq1  CCCATTTTTCAATTGTTAATCTCACTAAAGTGAGATGGTAATTTTAAAGA  295
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCA-TTTTCAATTGTTAATCTCACTAAAGTGAGATGGTAATTTTAAAGA  277

seq1  ATAAAATCCAGTACATACACAATTAGGTGCATCCAGCTGTCTCAAACAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCCAGTACATACACAATTAGGTGCATCCAGCTGTCTCAAACAAA  327

seq1  AGAGCAATCATGAGCTTAAAAAGGTGACAAGTTACAGAAAGTCAATAAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATCATGAGCTTAAAAAGGTGACAAGTTACAGAAAGTCAATAAAA  377

seq1  TTCAGAGAAAACACTGAAAACAATCATTTTGCTCAAGATCCTACATTCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAAAACACTGAAAACAATCATTTTGCTCAAGATCCTACATTCAT  427

seq1  TATTTAGAGACAAATAGACAATATCCAAATTAGAGACAAAAATAAGGACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGAGACAAATAGACAATATCCAAATTAGAGACAAAAATAAGGACA  477

seq1  TGCTATTAAATAAATCAAAATTTTGAGTAGAAAAATAAAATAGATGCGAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTAAATAAATCAAAATTTTGAGTAGAAAAATAAAATAGATGCGAT  527

seq1  AGCACAAATGTGGACATAGAACCAAAATATGAAGCACTACAAGCAGTAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAATGTGGACATAGAACCAAAATATGAAGCACTACAAGCAGTAGT  577

seq1  TAGTGGTAGGACTACAGAGAGAACACCGGTCTTTTGATACATAGTAACAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTAGGACTACAGAGAGAACACCGGTCTTTTGATACATAGTAACAA  627

seq1  CCACATAATTCAATGTATATCCATTGTAGTTTAAAGTATAGAGAAGAGGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAATTCAATGTATATCCATTGTAGTTTAAAGTATAGAGAAGAGGC  677

seq1  TAGAGATGAAGCCAGGTTGTTAGAATGCTTAGTTGTATGCATTAAAGCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGAAGCCAGGTTGTTAGAATGCTTAGTTGTATGCATTAAAGCTG  727

seq1  TGGGTTCATTCCCTAGCAGTGCATAAACCTAGTGTGCTAGAAAATGCCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCATTCCCTAGCAGTGCATAAACCTAGTGTGCTAGAAAATGCCTG  777

seq1  TAATCCCATCACAGGAAGGAGCATAAAGACATGAGGATCAGAGAGTCAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCATCACAGGAAGGAGCATAAAGACATGAGGATCAGAGAGTCAAA  827

seq1  GTCATCCTACTGATATCGATTATGAGGTAAACCTAGCATACATAAAGTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCTACTGATATCGATTATGAGGTAAACCTAGCATACATAAAGTGT  877

seq1  AAAGCTAATTTTAAAATAAAAATAAAGAAAAAATTAATAAAATTGTTATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAATTTTAAAATAAAAATAAAGAAAAAATTAATAAAATTGTTATC  927

seq1  TACTATACAATAAAAAAGAAATCAGCAATAGGCTTTATGGAGTTAATAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATACAATAAAAAAGAAATCAGCAATAGGCTTTATGGAGTTAATAAC  977

seq1  TAAAATAAGAAATATTTCCATAATGATCATTATTCAATTAATAGTAATAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAGAAATATTTCCATAATGATCATTATTCAATTAATAGTAATAT  1027

seq1  GTAAGACAAGTTAAGTGGAAAAACAATGGGTTAATTTATATAGCTCCTGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACAAGTTAAGTGGAAAAACAATGGGTTAATTTATATAGCTCCTGT  1077

seq1  CATTAGCATATTGTGGCTATGGCAGTTAAGTTACCTTAAACCCTTTAATT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCATATTGTGGCTATGGCAGTTAAGTTACCTTAAACCCTTTAATT  1127

seq1  GTGCTTCACTTCGGCCAAGCCACAACTCAAAATTAAAGGGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCACTTCGGCCAAGCCACAACTCAAAATTAAAGGGAATTC  1172


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