BAC Information

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BAC

Clone NameB6Ng01-115I04
Chromosome1 (Build37)
Map Location 105,839,546 - 105,840,507
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115I04.bB6Ng01-115I04.g
ACCDH920755DH920756
length1,1181,166
definitionDH920755|Mus musculus domesticus DNA, BAC clone: B6Ng01-115I04, 5' end.DH920756|Mus musculus domesticus DNA, BAC clone: B6Ng01-115I04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgagctttggggctaatatccacttaccagcgagtacatgtcat
atgtgttccattgtgattgggttacctcactcaggatgatattttctggt
tccatccatttggctaagaatttcatgaagtcattgtttttaatagctga
gtaacactccattgtgtaaatacaccacattttgttgttgttgttgttgt
tttgttttggtgtttttctttttctttttttttttttttttttttttgta
gccatttctctgttgaaggacatctgggttcttttcagattctggttatt
ataaataaggctgatatgaagatagtatagcatgtatccttggtatatgt
tggaggatctttttggtatatttccatgagcagtaaagtaggttcctcag
gtagtactatgtctaattttctgagtaacttctagactgatttgtgttta
atctctatgtagttctccattgtgtatatgtaacacattttctgcatcca
ttctgctgctgagggatgtttggttgtttccagcttcagtatatcataaa
taaggctgctatgaacatagaggagcatgtgtccttgttatgtattggag
cagcttttgggtatatgctcaggagtagtatagctgggtcctcaggtaat
attatttccaattatctcaagaactgccatattgatttccaaatcggttt
taccagcttgcagtcccaccagcaatggcagactgtttctctttctacac
atccttgtcaacctctgctgtcacctgtgtttatgatgttagccatttct
attggagtgaggtgggatctcaaggtcaatttgatttgcatttccctgaa
gattaagaatattggacattcctttaagtgcttctcattcaatcatttaa
gatttctcagtttagaattctatattttgctctatatgttactctggggt
ctactttcttgagttctttgtatatgttccatattagccctaatctgatt
aaggtaataaataatatacatatttccaatcatggggtggccttttgtct
aattcagggtctttgcttacaaaaacattcattttattaagtccatttgt
cgattgtgctcttgaagc
gaattcaatttcccaataaaaagacacagactaatagaatggatgctaaa
ataggattcatacttttggtgcattcaagaaacataggtcaacatcaaag
ataggcattgccatggagtatgggcaggaaaaagatatctaagcaaatat
acccaagaagtaagctggtatagcaattctagcatcgaacaaaatagact
ataaaccaaaattaatcagaagagatggggaaggacacttcatacacatt
aaaaataaaacaccaagatatcgttttaatttttaacatttatgcctaaa
atccaagggtaccctcatttgtaaaaggaacattattaaagtataaacca
catactgaacctcacacataactcagagatttatataccttacttttacc
aatgtgtgggccatgtagaaaaaaaaaaaaactaatctcagaaaaggacg
tcgtatatttctacagaaactttcacccacacacgaaagaatatgcttta
aattttttcatcgttttatggacaagtgtccaaaattgacctcatactag
gacaagaaacaattctcaacagagacaagaaaactgaaataaatccctgt
atcctctcagaccagaacagattaaagctggatttcaataacagaaacaa
cagaacacctacaaattcatgcaaatggaacccttctctactgagtaact
actgggatttgagtgaaaatggcctaggcaaacttcctattctttccttg
ctccctaagtgtagggctaatttaatatccttagtgttgtgcctttccta
acatgctggagtatacctccctggaattacaatgaaagtaaaaccattat
cctttcaactacttttttctgggtattctgtcacagaaacagaaggaaac
taatacaaaatatgtatacttcatatatatgtaagaacaaaatcagtgaa
ctcataattcattgaaagtggcaaagaagatttgaaaagtccttggctat
tttatgcccttaggataatttccctgagtactacttttcaattctattct
tgtggtttttaaatcactgctgactatactgctttctttggacctatggt
ttatgtggccaactactgaaatattggataataccacaagtttctatcta
accagtaaatggtcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_105839546_105840507
seq2: B6Ng01-115I04.g_275_1234

seq1  CAAAATTAATCAGAAGAGATGGGGAAGGACACTTCATACACATTAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTAATCAGAAGAGATGGGGAAGGACACTTCATACACATTAAAAAT  50

seq1  AAAACACCAAGATATCGTTTTAATTTTTAACATTTATGCCTAAAATCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCAAGATATCGTTTTAATTTTTAACATTTATGCCTAAAATCCAA  100

seq1  GGGTACCCTCATTTGTAAAAGGAACATTATTAAAGTATAAACCACATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACCCTCATTTGTAAAAGGAACATTATTAAAGTATAAACCACATACT  150

seq1  GAACCTCACACATAACTCAGAGATTTATATACCTTACTTTTACCAATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCACACATAACTCAGAGATTTATATACCTTACTTTTACCAATGTG  200

seq1  TGGGCCATGTAGAAAAAAAAAAAAACTAATCTCAGAAAAGGACGTCGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCATGTAGAAAAAAAAAAAAACTAATCTCAGAAAAGGACGTCGTAT  250

seq1  ATTTCTACAGAAACTTTCACCCACACACGAAAGAATATGCTTTAAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACAGAAACTTTCACCCACACACGAAAGAATATGCTTTAAATTTT  300

seq1  TTCATCGTTTTATGGACAAGTGTCCAAAATTGACCTCATACTAGGACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCGTTTTATGGACAAGTGTCCAAAATTGACCTCATACTAGGACAAG  350

seq1  AAACAATTCTCAACAGAGACAAGAAAACTGAAATAAATCCCTGTATCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTCTCAACAGAGACAAGAAAACTGAAATAAATCCCTGTATCCTC  400

seq1  TCAGACCAGAACAGATTAAAGCTGGATTTCAATAACAGAAACAACAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCAGAACAGATTAAAGCTGGATTTCAATAACAGAAACAACAGAAC  450

seq1  ACCTACAAATTCATGCAAATGGAACCCTTCTCTACTGAGTAACTACTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAAATTCATGCAAATGGAACCCTTCTCTACTGAGTAACTACTGGG  500

seq1  ATTTGAGTGAAAATGGCCTAGGCAAACTTCCTATTCTTTCCTTGCTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTGAAAATGGCCTAGGCAAACTTCCTATTCTTTCCTTGCTCCCT  550

seq1  AAGTGTAGGGCTAATTTAATATCCTTAGTGTTGTGCCTTTCCTAACATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGGGCTAATTTAATATCCTTAGTGTTGTGCCTTTCCTAACATGC  600

seq1  TGGAGTATACCTCCCTGGAATTACAATGAAAGTAAAACCATTATCCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTATACCTCCCTGGAATTACAATGAAAGTAAAACCATTATCCTTTC  650

seq1  AACTACTTTTTTCTGGGTATTCTGTCACAGAAACAGAAGGAAACTAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTTTTTCTGGGTATTCTGTCACAGAAACAGAAGGAAACTAATAC  700

seq1  AAAATATGTATACTTCATATATATGT-AGAACAAAATCAGTGAACTCAT-  748
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  AAAATATGTATACTTCATATATATGTAAGAACAAAATCAGTGAACTCATA  750

seq1  ATTCATTGAAAGT-GCAAAGAAGATTTGAAAAGTCCTTGGCTATTTTATG  797
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTCATTGAAAGTGGCAAAGAAGATTTGAAAAGTCCTTGGCTATTTTATG  800

seq1  CCTTTAGGATTAATTTCCCTGAGTACTACTTTTTCAATTCTATTCTTGTT  847
      || |||||| ||||||||||||||||||| ||||||||||||||||||| 
seq2  CCCTTAGGA-TAATTTCCCTGAGTACTAC-TTTTCAATTCTATTCTTGT-  847

seq1  GGTTTTTTAATTCACCTGCTGACTATACTGCTTTCTTTGTA-CTATGGTT  896
       | ||||||| ||| |||||||||||||||||||||||| | |||||| |
seq2  -GGTTTTTAAATCA-CTGCTGACTATACTGCTTTCTTTGGACCTATGG-T  894

seq1  TTATGGTTGCACACTACTGAAATATTGATAAATACCACA--TTTCTATCC  944
      |||| || ||  |||||||||||||||   |||||||||  ||||||| |
seq2  TTAT-GTGGCCAACTACTGAAATATTGGATAATACCACAAGTTTCTAT-C  942

seq1  TACCCAGTAAATAGTCAA  962
      || ||||||||| |||||
seq2  TAACCAGTAAATGGTCAA  960