BAC Information

Click to search

BAC

Clone NameB6Ng01-115K04
Chromosome1 (Build37)
Map Location 78,197,951 - 78,349,064
singlet/doubletdoublet
Overlap geneLOC100039210, Sgpp2, LOC100039382
Upstream geneEpha4, LOC100039330, Pax3
Downstream geneFarsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115K04.bB6Ng01-115K04.g
ACCDH920849DH920850
length830634
definitionDH920849|Mus musculus domesticus DNA, BAC clone: B6Ng01-115K04, 5' end.DH920850|Mus musculus domesticus DNA, BAC clone: B6Ng01-115K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,197,951 - 78,198,785)(78,348,431 - 78,349,064)
sequence
gaattcccgtcccagggtgaccgactgtacatcaccctgcagaggctggc
agggtggtggagtaagaaggcacccggtgaggtggcgggctaggcctatc
gttgagatgagtacagacctgtctctgactcttttcggtgcccgccggct
tcagggcagtggggtgacaccacccctctgccttcgatcctttcaaccca
caggagattgtgagccaggtgatttcaactggagtgatggcgatcaattg
atcagtaggagaactgaaagatcagaggaaactgaaagacaaagttcaag
cgcaggatgtccccgccaaacctggacgcttgtcaccgggagtcaaggca
gctgaaggccgcggggccgagggtgtgcccagctcccggtactctcgggc
ttgaaattttaagcaagactggagcgggagatgccgcagaccactgagcc
aaggtttcacacacaacaggtggaggaggcagggttctcagcctccaagc
tgggctcgatctggccaaagagctgcggggagcagggccggagctaacag
gaggtgaccggaagctgccctgtacacctgcctagaagagactcacagct
ggagactgctgggggggggggggctagatttaggcgactatctgggcggg
gaaggactactgtttttcagaaccccatggcttttttaagccgggaggga
ggatagaatagtataaaggaggggagggaagatatagaggctggctagat
acctagaaatggatgaaagactggagtacagaaagacgagcgtcggattc
gggaaacacacggtctgagaaaaatcgaac
gaattcaccatgtagcccaggctagcctcaaactccctaaatgctttgtt
tatatgtgtatataaacacaccctggttattggaacattttttaaagagg
ctaagagagttatgacttaatctatattttcctcttctttctttttttaa
agatttatttatttttattatatgtaagtacactgtagctgtcttcagac
actccagaagagggaatcagatctcattacagatgtttgtgagccaccat
gtggttgctgggatttgaactccggaccttcggaagagcagtcaggtgct
cttacccactgagccatctcaccagccccctttcctcttatttcttaaat
ttcttaaaattcatagagatgacttggggtgcagcccagtgagagtgtcg
cacgcttagagtgagcctgatcataagctcaaggaccaaaaggtaaacaa
atgaaaattaaatttaacgggaaaatatcattagcaatgatgatctcaaa
cgccaggggggagactgcccggaggcagtcatgtcttctcctgacacaac
tctatcagcaagcatgcttatactgcttttaagtgctattttctttttct
ttctttctttccttccttccttccttccttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_78197951_78198785
seq2: B6Ng01-115K04.b_43_872

seq1  GAATTCCCGTCCCAGGGTGACCGACTGTACATCACCCTGCAGAGGCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGTCCCAGGGTGACCGACTGTACATCACCCTGCAGAGGCTGGC  50

seq1  AGGGTGGTGGAGTAAGAAGGCACCCGGTGAGGTGGCGGGCTAGGCCTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGTGGAGTAAGAAGGCACCCGGTGAGGTGGCGGGCTAGGCCTATC  100

seq1  GTTGAGATGAGTACAGACCTGTCTCTGACTCTTTTCGGTGCCCGCCGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGATGAGTACAGACCTGTCTCTGACTCTTTTCGGTGCCCGCCGGCT  150

seq1  TCAGGGCAGTGGGGTGACACCACCCCTCTGCCTTCGATCCTTTCAACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCAGTGGGGTGACACCACCCCTCTGCCTTCGATCCTTTCAACCCA  200

seq1  CAGGAGATTGTGAGCCAGGTGATTTCAACTGGAGTGATGGCGATCAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATTGTGAGCCAGGTGATTTCAACTGGAGTGATGGCGATCAATTG  250

seq1  ATCAGTAGGAGAACTGAAAGATCAGAGGAAACTGAAAGACAAAGTTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAGGAGAACTGAAAGATCAGAGGAAACTGAAAGACAAAGTTCAAG  300

seq1  CGCAGGATGTCCCCGCCAAACCTGGACGCTTGTCACCGGGAGTCAAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGATGTCCCCGCCAAACCTGGACGCTTGTCACCGGGAGTCAAGGCA  350

seq1  GCTGAAGGCCGCGGGGCCGAGGGTGTGCCCAGCTCCCGGTACTCTCGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGGCCGCGGGGCCGAGGGTGTGCCCAGCTCCCGGTACTCTCGGGC  400

seq1  TTGAAATTTTAAGCAAGACTGGAGCGGGAGATGCCGCAGACCACTGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTTTAAGCAAGACTGGAGCGGGAGATGCCGCAGACCACTGAGCC  450

seq1  AAGGTTTCACACACAACAGGTGGAGGAGGCAGGGTTCTCAGCCTCCAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCACACACAACAGGTGGAGGAGGCAGGGTTCTCAGCCTCCAAGC  500

seq1  TGGGCTCGATCTGGCCAAAGAGCTGCGGGGAGCAGGGCCGGAGCTAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCGATCTGGCCAAAGAGCTGCGGGGAGCAGGGCCGGAGCTAACAG  550

seq1  GAGGTGACCGGAAGCTGCCCTGTACACCTGCCTAGAAGAGACTCACAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGACCGGAAGCTGCCCTGTACACCTGCCTAGAAGAGACTCACAGCT  600

seq1  GGAGACTGCTGGGGGGGGGGGGGCTAGATTTAGGCGACTATCTGGGCGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTGCTGGGGGGGGGGGGGCTAGATTTAGGCGACTATCTGGGCGGG  650

seq1  GAAGGACTACTG-TTTTCAGAACCCCATGGCTTTTTTAAGCCGGGAGGGA  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAAGGACTACTGTTTTTCAGAACCCCATGGCTTTTTTAAGCCGGGAGGGA  700

seq1  GGATAGAATAGTATAAAGGAGGGGAGGGAAGAAAATAAAGGCGGGCTAGA  749
      ||||||||||||||||||||||||||||||| | ||| |||| |||||||
seq2  GGATAGAATAGTATAAAGGAGGGGAGGGAAG-ATATAGAGGCTGGCTAGA  749

seq1  TACCTAGAAAAAGGAAGAAAGAGTGGAGGAAAGAAAAGACGGAGCGATGG  799
      ||||||| ||| ||| |||||| ||||| | || |||||| ||||| | |
seq2  TACCTAG-AAATGGATGAAAGACTGGAGTACAG-AAAGAC-GAGCG-TCG  795

seq1  GAGTAGGGAAACACACGGACTGAGAAAAAATCGAAC  835
      || | ||||||||||||| ||||| |||||||||||
seq2  GATTCGGGAAACACACGGTCTGAG-AAAAATCGAAC  830

seq1: chr1_78348431_78349064
seq2: B6Ng01-115K04.g_68_701 (reverse)

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAAGAAAGAAAGAAAAAGAAAATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAGGAAAGAAAGAAAGAAAAAGAAAATAGC  50

seq1  ACTTAAAAGCAGTATAAGCATGCTTGCTGATAGAGTTGTGTCAGGAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAAGCAGTATAAGCATGCTTGCTGATAGAGTTGTGTCAGGAGAAG  100

seq1  ACATGACTGCCTCCGGGCAGTCTCCCCCCTGGCGTTTGAGATCATCATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACTGCCTCCGGGCAGTCTCCCCCCTGGCGTTTGAGATCATCATTG  150

seq1  CTAATGATATTTTCCCGTTAAATTTAATTTTCATTTGTTTACCTTTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGATATTTTCCCGTTAAATTTAATTTTCATTTGTTTACCTTTTGGT  200

seq1  CCTTGAGCTTATGATCAGGCTCACTCTAAGCGTGCGACACTCTCACTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGCTTATGATCAGGCTCACTCTAAGCGTGCGACACTCTCACTGGG  250

seq1  CTGCACCCCAAGTCATCTCTATGAATTTTAAGAAATTTAAGAAATAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCCCAAGTCATCTCTATGAATTTTAAGAAATTTAAGAAATAAGAG  300

seq1  GAAAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCT  350

seq1  TCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAAC  400

seq1  ATCTGTAATGAGATCTGATTCCCTCTTCTGGAGTGTCTGAAGACAGCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAATGAGATCTGATTCCCTCTTCTGGAGTGTCTGAAGACAGCTAC  450

seq1  AGTGTACTTACATATAATAAAAATAAATAAATCTTTAAAAAAAGAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTTACATATAATAAAAATAAATAAATCTTTAAAAAAAGAAAGAA  500

seq1  GAGGAAAATATAGATTAAGTCATAACTCTCTTAGCCTCTTTAAAAAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAATATAGATTAAGTCATAACTCTCTTAGCCTCTTTAAAAAATGT  550

seq1  TCCAATAACCAGGGTGTGTTTATATACACATATAAACAAAGCATTTAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAACCAGGGTGTGTTTATATACACATATAAACAAAGCATTTAGGG  600

seq1  AGTTTGAGGCTAGCCTGGGCTACATGGTGAATTC  634
      ||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGGCTAGCCTGGGCTACATGGTGAATTC  634