BAC Information

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BAC

Clone NameB6Ng01-117E06
Chromosome1 (Build37)
Map Location 145,209,718 - 145,349,971
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545369
Downstream geneCdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5, Rgs2, Rgs13, Rbm6-ps2, Rgs1, EG639456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117E06.bB6Ng01-117E06.g
ACCDH922048DH922049
length1,1671,088
definitionDH922048|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E06, 5' end.DH922049|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,209,718 - 145,210,893)(145,348,860 - 145,349,971)
sequence
gaattcttgtcccaactgtggaatacaggatgctttcctaacagctaagt
ttcaacgcttttccccttaaagatcttttcatataaatatcacttccttc
tctcatatttcacgctctgaggcatctagaggttaagcacactgaacttg
gctgcacagtcaatattttaagagttctgacagctttattgactagattt
ccacaataatcagagattcatttgtccatgagaaactactggtagtgaaa
ataatccccaaatcctccttttttcatgaaagaatgtgcaaagcgctgaa
agaagtgagaaatggaaaggtttggggccgaagggatgctcgaagactgc
tattgatcctgacacagcgtattgattgaccatggagctctgctcactgt
aatgtctagccaaaagaaaaagtgtggcagcagataaaagatctcagcaa
tgtcgccagctgtgatcacaagtttccagaagggatgggaacagccagtg
aagcgtctttagtattggatcctgcggatgtattgtcaagtgtttatctc
agtaagactggagagtacgtctcagtcatgtgcagttctaatatcaaggt
ttgttgtctacattctcacttccatttttatgcacttccaagtggacaga
gttttaaaggttttgcttttagaaagccctttagtgtgtgaaaactatgt
tccatcagtcactaaacagatctcagatgggagcagcagcacgatacaga
ggcccacagagcccagagccgactcagagcttccattttagcagtgaatg
gctatgtctttgagaaagttagatacctaatatgcacattttcttgaact
atatgatgaaggtaattaatagtaactatattgagtaatcaaatgaggac
tttcttggttgttgttgttgttgttgttgttgttgttgttgttttgaaca
gggtcaagttactcagtctggtcttaaacttccaccctcctgcctcagcc
tccagagaagctcagcttccaggcttgcatcgctaggtttagtcgagaat
atattttaagtgctcagaccaatggctggtaatctaccaggggaacatac
caatgtttggaaaatatgatttcaatatagggtcagcctgcgcagcaaga
taacctcgaacacacta
gaattcaattctatgcagtatttgagctataatagtatgttcaattgaaa
gagagatggctgatgggggtgggaagcttaaacatgcatgagctgtggga
gaagacttgaactgtattcagggagaagacaatcatatgccaaccaactg
attatgcccactttctgggcataattttcctattagggcctactccagtc
tagctttcatccagtcaggtcctgtacatagtcctgtcagagaaaattct
aaatcaatgataatgtggtctttatttgactcaaatatattaagtagaac
acttccttttaaagaaggatgtcagggacataaaagggggaactttgtga
tgcagtaaatagaaacgacggtccctttggtgttttgctacatttgccag
cttcaattcgtacttctacttgactcttctctttgatgcagactcacaaa
atgttttagaaaaggaaagtaccaacgcatgataaaaatttacttttgaa
atggatttgaattaggtcttgccttagataagtttgttcacattaagctg
ctttgaactgtagcttctatttagtaccggggctatataaacacaattag
taaaactctgtgcagtgaaccaaaatggagatgagattaccttaaatcaa
aatcttgtgataattcttgttgaaattggaggaatctgaagtgagttctt
ctttttccctttatgctgtaatggctccagtttaaattatgttattcaaa
gggtaccagagctttcatacattattcatccacaaagatttagctatttc
gagccacatcctctgaaaacgaatgagttgagtaaaatggttttcaaagc
attcataaatacctcttggctttccataactaattgtggtatctgtgtag
ggacacttgcttcctgctaccaagtatcacacctaatatttccctttcta
agatatttgcggatagttgtctcatctgtgatcacagtagtcaaacagag
aaacaagagtatatctcagggttcagcacttttgactctccggtggatca
gtctttctaatatcatgacctcagctttcagcagcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_145209718_145210893
seq2: B6Ng01-117E06.b_43_1209

seq1  GAATTCTTGTCCCAACTGTGGAATACAGGATGCTTTCCTAACAGCTAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCCCAACTGTGGAATACAGGATGCTTTCCTAACAGCTAAGT  50

seq1  TTCAACGCTTTTCCCCTTAAAGATCTTTTCATATAAATATCACTTCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACGCTTTTCCCCTTAAAGATCTTTTCATATAAATATCACTTCCTTC  100

seq1  TCTCATATTTCACGCTCTGAGGCATCTAGAGGTTAAGCACACTGAACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATATTTCACGCTCTGAGGCATCTAGAGGTTAAGCACACTGAACTTG  150

seq1  GCTGCACAGTCAATATTTTAAGAGTTCTGACAGCTTTATTGACTAGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACAGTCAATATTTTAAGAGTTCTGACAGCTTTATTGACTAGATTT  200

seq1  CCACAATAATCAGAGATTCATTTGTCCATGAGAAACTACTGGTAGTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATAATCAGAGATTCATTTGTCCATGAGAAACTACTGGTAGTGAAA  250

seq1  ATAATCCCCAAATCCTCCTTTTTTCATGAAAGAATGTGCAAAGCGCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCCCAAATCCTCCTTTTTTCATGAAAGAATGTGCAAAGCGCTGAA  300

seq1  AGAAGTGAGAAATGGAAAGGTTTGGGGCCGAAGGGATGCTCGAAGACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGAGAAATGGAAAGGTTTGGGGCCGAAGGGATGCTCGAAGACTGC  350

seq1  TATTGATCCTGACACAGCGTATTGATTGACCATGGAGCTCTGCTCACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATCCTGACACAGCGTATTGATTGACCATGGAGCTCTGCTCACTGT  400

seq1  AATGTCTAGCCAAAAGAAAAAGTGTGGCAGCAGATAAAAGATCTCAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTAGCCAAAAGAAAAAGTGTGGCAGCAGATAAAAGATCTCAGCAA  450

seq1  TGTCGCCAGCTGTGATCACAAGTTTCCAGAAGGGATGGGAACAGCCAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCCAGCTGTGATCACAAGTTTCCAGAAGGGATGGGAACAGCCAGTG  500

seq1  AAGCGTCTTTAGTATTGGATCCTGCGGATGTATTGTCAAGTGTTTATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTCTTTAGTATTGGATCCTGCGGATGTATTGTCAAGTGTTTATCTC  550

seq1  AGTAAGACTGGAGAGTACGTCTCAGTCATGTGCAGTTCTAATATCAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGACTGGAGAGTACGTCTCAGTCATGTGCAGTTCTAATATCAAGGT  600

seq1  TTGTTGTCTACATTCTCACTTCCATTTTTATGCACTTCCAAGTGGACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTCTACATTCTCACTTCCATTTTTATGCACTTCCAAGTGGACAGA  650

seq1  GTTTTAAAGGTTTTGCTTTTAGAAAGCCCTTTAGTGTGTGAAAACTATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAGGTTTTGCTTTTAGAAAGCCCTTTAGTGTGTGAAAACTATGT  700

seq1  TCCATCAGTCACTAAACAGATCTCAGATGGGAGCAGCAGCACGATACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAGTCACTAAACAGATCTCAGATGGGAGCAGCAGCACGATACAGA  750

seq1  GGCCCACAGAGCCCAGAGCCGACTCAGAGCTTCCATTTTAGCAGTGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACAGAGCCCAGAGCCGACTCAGAGCTTCCATTTTAGCAGTGAATG  800

seq1  GCTATGTCTTTGAGAAAGTTAGATACCTAATATGCACATTTTCTTGAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTCTTTGAGAAAGTTAGATACCTAATATGCACATTTTCTTGAACT  850

seq1  ATATGATGAAGGTAATTAATAGTAACTATATTGAGTAATCAAATGAGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGAAGGTAATTAATAGTAACTATATTGAGTAATCAAATGAGGAC  900

seq1  TTTCTTGGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTTTTGAA  950
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  TTTCTTGGTTGTTGTTGTTG-TTGTTGTTGTTGTTGTTGTTG-TTTTGAA  948

seq1  CAGGGTCCAAGTTACTCAGTCTGGTCTTAAACTTCCACCCTTCCTGCCTC  1000
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGGGT-CAAGTTACTCAGTCTGGTCTTAAACTTCCACCC-TCCTGCCTC  996

seq1  AGCCTCCAGAGAAGCTCAGCTTCCAGGCTTGCATCGCTAGGTTTAGTCGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCAGAGAAGCTCAGCTTCCAGGCTTGCATCGCTAGGTTTAGTCGA  1046

seq1  GATTATAATTTTAAAGTGCCCAGACCATTGCCT-GTTATCTAACAGGGG-  1098
      || ||||  ||| |||||| ||||||| || || || ||||| |||||| 
seq2  GAATATA--TTTTAAGTGCTCAGACCAATGGCTGGTAATCTACCAGGGGA  1094

seq1  ACATACCAGTGTTTGATAAAATAGTATTTCAATAAGCGTTCATGCCTGCG  1148
      |||||||| ||||||  ||||||  |||||||||   | ||| |||||||
seq2  ACATACCAATGTTTG-GAAAATATGATTTCAATATAGGGTCA-GCCTGCG  1142

seq1  CAGCAGGATTAAACTTCAGAACACACTA  1176
      ||||| |||  ||| || ||||||||||
seq2  CAGCAAGAT--AACCTC-GAACACACTA  1167

seq1: chr1_145348860_145349971
seq2: B6Ng01-117E06.g_68_1155 (reverse)

seq1  TTTGC--CTGAAAGGCTTGAGGTCATGGATATTTAAGAAAAGACTGGATC  48
      |||||  |||||||   ||||||||| ||||||  || ||||||| ||||
seq2  TTTGCTGCTGAAAG--CTGAGGTCAT-GATATT--AG-AAAGACT-GATC  43

seq1  ACACGGGAAGAGTCAAAAGGTGCTGAAACCCCTGGAGATATACTCTTTGT  98
       ||| || |||||||||| ||||||||  |||| ||||||||||| ||||
seq2  -CACCGG-AGAGTCAAAA-GTGCTGAA--CCCT-GAGATATACTC-TTGT  86

seq1  TTCTCTGTTTTGAACTTACTGTGATCAACAGAATGAGAACAAACTTATCC  148
      ||||||| |||||   |||||||||| |||| ||||| ||||   |||||
seq2  TTCTCTG-TTTGA--CTACTGTGATC-ACAG-ATGAG-ACAA--CTATCC  128

seq1  GCAAATTATCTTAGAAAGGGAAATTATTAGGTGTGATAACTTGGTAGCAG  198
      ||||| ||||||||||||||||| ||||||||||||| ||||||||||||
seq2  GCAAA-TATCTTAGAAAGGGAAA-TATTAGGTGTGAT-ACTTGGTAGCAG  175

seq1  GAAGCAAGTGTCCCTTACACAGATACCACAATTAGTTATGGAAAGCCAAG  248
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAAGCAAGTGTCCC-TACACAGATACCACAATTAGTTATGGAAAGCCAAG  224

seq1  AGGTATTTATGAATGCTTTGAAAACCATTTTACTCAACTCATTCGTTTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTATGAATGCTTTGAAAACCATTTTACTCAACTCATTCGTTTTC  274

seq1  AGAGGATGTGGCTCGAAATAGCTAAATCTTTGTGGATGAATAATGTATGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATGTGGCTCGAAATAGCTAAATCTTTGTGGATGAATAATGTATGA  324

seq1  AAGCTCTGGTACCCTTTGAATAACATAATTTAAACTGGAGCCATTACAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGGTACCCTTTGAATAACATAATTTAAACTGGAGCCATTACAGC  374

seq1  ATAAAGGGAAAAAGAAGAACTCACTTCAGATTCCTCCAATTTCAACAAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGAAAAAGAAGAACTCACTTCAGATTCCTCCAATTTCAACAAGA  424

seq1  ATTATCACAAGATTTTGATTTAAGGTAATCTCATCTCCATTTTGGTTCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCACAAGATTTTGATTTAAGGTAATCTCATCTCCATTTTGGTTCAC  474

seq1  TGCACAGAGTTTTACTAATTGTGTTTATATAGCCCCGGTACTAAATAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGAGTTTTACTAATTGTGTTTATATAGCCCCGGTACTAAATAGAA  524

seq1  GCTACAGTTCAAAGCAGCTTAATGTGAACAAACTTATCTAAGGCAAGACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTTCAAAGCAGCTTAATGTGAACAAACTTATCTAAGGCAAGACC  574

seq1  TAATTCAAATCCATTTCAAAAGTAAATTTTTATCATGCGTTGGTACTTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAAATCCATTTCAAAAGTAAATTTTTATCATGCGTTGGTACTTTC  624

seq1  CTTTTCTAAAACATTTTGTGAGTCTGCATCAAAGAGAAGAGTCAAGTAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAAAACATTTTGTGAGTCTGCATCAAAGAGAAGAGTCAAGTAGA  674

seq1  AGTACGAATTGAAGCTGGCAAATGTAGCAAAACACCAAAGGGACCGTCGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGAATTGAAGCTGGCAAATGTAGCAAAACACCAAAGGGACCGTCGT  724

seq1  TTCTATTTACTGCATCACAAAGTTCCCCCTTTTATGTCCCTGACATCCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTACTGCATCACAAAGTTCCCCCTTTTATGTCCCTGACATCCTT  774

seq1  CTTTAAAAGGAAGTGTTCTACTTAATATATTTGAGTCAAATAAAGACCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAGGAAGTGTTCTACTTAATATATTTGAGTCAAATAAAGACCAC  824

seq1  ATTATCATTGATTTAGAATTTTCTCTGACAGGACTATGTACAGGACCTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATTGATTTAGAATTTTCTCTGACAGGACTATGTACAGGACCTGA  874

seq1  CTGGATGAAAGCTAGACTGGAGTAGGCCCTAATAGGAAAATTATGCCCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGAAAGCTAGACTGGAGTAGGCCCTAATAGGAAAATTATGCCCAG  924

seq1  AAAGTGGGCATAATCAGTTGGTTGGCATATGATTGTCTTCTCCCTGAATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGGCATAATCAGTTGGTTGGCATATGATTGTCTTCTCCCTGAATA  974

seq1  CAGTTCAAGTCTTCTCCCACAGCTCATGCATGTTTAAGCTTCCCACCCCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAAGTCTTCTCCCACAGCTCATGCATGTTTAAGCTTCCCACCCCC  1024

seq1  ATCAGCCATCTCTCTTTCAATTGAACATACTATTATAGCTCAAATACTGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCATCTCTCTTTCAATTGAACATACTATTATAGCTCAAATACTGC  1074

seq1  ATAGAATTGAATTC  1112
      ||||||||||||||
seq2  ATAGAATTGAATTC  1088