BAC Information

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BAC

Clone NameB6Ng01-117G02
Chromosome1 (Build37)
Map Location 22,658,336 - 22,810,809
singlet/doubletdoublet
Overlap geneRims1
Upstream geneKcnq5, LOC435612, LOC100040338, Rims1
Downstream geneEG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782, B3gat2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117G02.bB6Ng01-117G02.g
ACCDH922136DH922137
length1,166736
definitionDH922136|Mus musculus domesticus DNA, BAC clone: B6Ng01-117G02, 5' end.DH922137|Mus musculus domesticus DNA, BAC clone: B6Ng01-117G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,658,336 - 22,659,505)(22,810,073 - 22,810,809)
sequence
gaattcaaaaccatctcgaccattgaaattgatctccatctactacccct
cctgaatataaattttaaatatataatataaatataaattgtaaatgtaa
acttataactgagctaatcatatagccagaatgaactatttccaagttac
tcccaagtctggactttagagagtcctgggacagggaggcagagcgtgtg
gagggtatttcatgaaaagcctgtgtgctgcatctgagtggaatgcttcg
ttaacatttaacattccaggaatattcagcctttgctgaataccaagcaa
cacatgaccactatgtccacagactctctcttccgtgcatcttagttaac
ttacattgttagaatggatgtcagttacaaaggaggccaaccttaggaaa
tattaaatttttctcattgtatttgtgagattgagaaaaaaatgttttag
ataccaagccgtgtagtaattgtgaaattggctttcacaatacctgtctg
acatcattcagcacagtacaatgttaagaaacaattataattcaaagagg
aacactgctaactcctatcagcacttatgaaaaacatgggcgctgcttat
tggaaagcgcttaatgaataatggcttctgggaattaatgaatacaaata
aaaagtgttctcatattttgaaggttttagggtaagtcaaattgaaagca
tttctatgatgaactcataatgaaattgtattcaatgttttccagcatat
cacagttattgtgctaagaagcataaatacatttgaagattccagaagaa
gagaatattgcaaaacaatcatttaaaattgctcaagaccagcctgctct
tggcaattggaaaatacctcattatggtaacctcaagaaatcccaacaca
aagtatgtcagagacccatagaaactctcttcccaggagagtccctaaag
ctcagagctacatgttgatgccctcgttatttccaagctacccacagtgt
ggaacactgttcccttgaggaataagatatacagcaaggactgtacatac
acttactgtggattttctgtcacagctctatactccctttgaatgcccga
tcagtaaattttagtaaagtatcgcttcaaacaccatttgaagggaagat
atatgggggggggggg
gaattccctgctccttctcatccaggggaaaaccaaaaaaaaaaaaaaaa
aaaaaaaaccacaaaaaaccaaatacttcaagcctgccagcttgagggag
gcagaaccctcattaatctgcttcctgtccctagtgaaagaatgacactg
ccccaaccccatgctgcaggcttcccctcttctgagcctggaagtaatga
tgtcttaatggtgctgctgtctgtctgtctgtcaggttgttggtccatct
gtcctcactactgcagcccctgccacctgtcctagacactgtataattgg
ctagcatttgcagattcgctgctgttcctgttggtgcttgctgcagacag
caggtagatggaggcctccagcagctaatgataaatatgggctgctcctg
agagtccagataggaagggggtcacagtacaagcagtggcataatgcctc
ttcgttggctgttggaagcattgtaaagggtgaaggttttaagttggagt
ggatgagtttagggcagaatcgcaaacctgctgaccacctagggtcaatg
ataatactatatgggtttacatggacaagcacattaaaagctctgcccaa
ctgctcgtgtctggcatatccctgtcactgctttccatggacttgtaaat
actattcctttatggcacgatttcacagaatatctcaggtgtactgctgt
tatacaacagctctcaataaccctggacctctgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_22658336_22659505
seq2: B6Ng01-117G02.b_45_1210

seq1  GAATTCAAAACCATCTCGACCATTGAAATTGATCTCCATCTACTACCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACCATCTCGACCATTGAAATTGATCTCCATCTACTACCCCT  50

seq1  CCTGAATATAAATTTTAAATATATAATATAAATATAAATTGTAAATGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATATAAATTTTAAATATATAATATAAATATAAATTGTAAATGTAA  100

seq1  ACTTATAACTGAGCTAATCATATAGCCAGAATGAACTATTTCCAAGTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAACTGAGCTAATCATATAGCCAGAATGAACTATTTCCAAGTTAC  150

seq1  TCCCAAGTCTGGACTTTAGAGAGTCCTGGGACAGGGAGGCAGAGCGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTCTGGACTTTAGAGAGTCCTGGGACAGGGAGGCAGAGCGTGTG  200

seq1  GAGGGTATTTCATGAAAAGCCTGTGTGCTGCATCTGAGTGGAATGCTTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTATTTCATGAAAAGCCTGTGTGCTGCATCTGAGTGGAATGCTTCG  250

seq1  TTAACATTTAACATTCCAGGAATATTCAGCCTTTGCTGAATACCAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTTAACATTCCAGGAATATTCAGCCTTTGCTGAATACCAAGCAA  300

seq1  CACATGACCACTATGTCCACAGACTCTCTCTTCCGTGCATCTTAGTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACCACTATGTCCACAGACTCTCTCTTCCGTGCATCTTAGTTAAC  350

seq1  TTACATTGTTAGAATGGATGTCAGTTACAAAGGAGGCCAACCTTAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGTTAGAATGGATGTCAGTTACAAAGGAGGCCAACCTTAGGAAA  400

seq1  TATTAAATTTTTCTCATTGTATTTGTGAGATTGAGAAAAAAATGTTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATTTTTCTCATTGTATTTGTGAGATTGAGAAAAAAATGTTTTAG  450

seq1  ATACCAAGCCGTGTAGTAATTGTGAAATTGGCTTTCACAATACCTGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAGCCGTGTAGTAATTGTGAAATTGGCTTTCACAATACCTGTCTG  500

seq1  ACATCATTCAGCACAGTACAATGTTAAGAAACAATTATAATTCAAAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATTCAGCACAGTACAATGTTAAGAAACAATTATAATTCAAAGAGG  550

seq1  AACACTGCTAACTCCTATCAGCACTTATGAAAAACATGGGCGCTGCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGCTAACTCCTATCAGCACTTATGAAAAACATGGGCGCTGCTTAT  600

seq1  TGGAAAGCGCTTAATGAATAATGGCTTCTGGGAATTAATGAATACAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGCGCTTAATGAATAATGGCTTCTGGGAATTAATGAATACAAATA  650

seq1  AAAAGTGTTCTCATATTTTGAAGGTTTTAGGGTAAGTCAAATTGAAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTTCTCATATTTTGAAGGTTTTAGGGTAAGTCAAATTGAAAGCA  700

seq1  TTTCTATGATGAACTCATAATGAAATTGTATTCAATGTTTTCCAGCATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGATGAACTCATAATGAAATTGTATTCAATGTTTTCCAGCATAT  750

seq1  CACAGTTATTGTGCTAAGAAGCATAAATACATTTGAAGATTCCAGAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTATTGTGCTAAGAAGCATAAATACATTTGAAGATTCCAGAAGAA  800

seq1  GAGAATATTGCAAAACAATCATTTAAAATTGCTCAAGACCAGCCTGCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATTGCAAAACAATCATTTAAAATTGCTCAAGACCAGCCTGCTCT  850

seq1  TGGCAATTGGAAAATACCTCATTATGGTAACCTCAAGAAATCCCAACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATTGGAAAATACCTCATTATGGTAACCTCAAGAAATCCCAACACA  900

seq1  AAGTATGTCAGAGACCCATAGAAACTCTCTTCCCAGGAGAGTCCCTAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGTCAGAGACCCATAGAAACTCTCTTCCCAGGAGAGTCCCTAAAG  950

seq1  CTCAGAGCTACATGTTGATGCCCTCGTTATTTCCAAGCTACCCACAGTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGCTACATGTTGATGCCCTCGTTATTTCCAAGCTACCCACAGTGT  1000

seq1  GGAACACTGTTCCCTTGAGGAATAAGATATACAGCAGGGACTGTACATAC  1050
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGAACACTGTTCCCTTGAGGAATAAGATATACAGCAAGGACTGTACATAC  1050

seq1  AC-TACTGTGGATTTTCTGTCACCAGCTTCTATTACTCCCCTTTGTATGC  1099
      || ||||||||||||||||||| |||| |||| |||| ||||||| ||||
seq2  ACTTACTGTGGATTTTCTGTCA-CAGC-TCTA-TACT-CCCTTTGAATGC  1096

seq1  CCGATCAGTAAATGTTTTAAGTAAAGTATCGCTTCAAAACACCATTTTGA  1149
      ||||||||||||   ||| |||||||||||||||| |||||||||||  |
seq2  CCGATCAGTAAA---TTTTAGTAAAGTATCGCTTC-AAACACCATTTGAA  1142

seq1  GG---GAGAGATGGGGGGGGGGGG  1170
      ||   || | ||||||||||||||
seq2  GGGAAGATATATGGGGGGGGGGGG  1166

seq1: chr1_22810073_22810809
seq2: B6Ng01-117G02.g_71_806 (reverse)

seq1  ATGCAGAGGTCCAGGGTTATTGAGAGCTGTTGTATAACAGCAGTACACGC  50
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGCAGAGGTCCAGGGTTATTGAGAGCTGTTGTATAACAGCAGTACAC-C  49

seq1  TGAGATATTCTGTGAAATCGTGCCATAAAGGAATAGTATTTACAAGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATATTCTGTGAAATCGTGCCATAAAGGAATAGTATTTACAAGTCCA  99

seq1  TGGAAAGCAGTGACAGGGATATGCCAGACACGAGCAGTTGGGCAGAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGCAGTGACAGGGATATGCCAGACACGAGCAGTTGGGCAGAGCTT  149

seq1  TTAATGTGCTTGTCCATGTAAACCCATATAGTATTATCATTGACCCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGCTTGTCCATGTAAACCCATATAGTATTATCATTGACCCTAGG  199

seq1  TGGTCAGCAGGTTTGCGATTCTGCCCTAAACTCATCCACTCCAACTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGCAGGTTTGCGATTCTGCCCTAAACTCATCCACTCCAACTTAAA  249

seq1  ACCTTCACCCTCTACAATGCTTCCAACAGCCAACGAAGAGGCATTATGCC  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCACCCTTTACAATGCTTCCAACAGCCAACGAAGAGGCATTATGCC  299

seq1  ACTGCTTGTACTGTGACCCCCTTCCTATCTGGACTCTCAGGAGCAGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTGTACTGTGACCCCCTTCCTATCTGGACTCTCAGGAGCAGCCCA  349

seq1  TATTTATCATTAGCTGCTGGAGGCCTCCATCTACCTGCTGTCTGCAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCATTAGCTGCTGGAGGCCTCCATCTACCTGCTGTCTGCAGCAA  399

seq1  GCACCAACAGGAACAGCAGCGAATCTGCAAATGCTAGCCAATTATACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAACAGGAACAGCAGCGAATCTGCAAATGCTAGCCAATTATACAGT  449

seq1  GTCTAGGACAGGTGGCAGGGGCTGCAGTAGTGAGGACAGATGGACCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGACAGGTGGCAGGGGCTGCAGTAGTGAGGACAGATGGACCAACA  499

seq1  ACCTGACAGACAGACAGACAGCAGCACCATTAAGACATCATTACTTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACAGACAGACAGACAGCAGCACCATTAAGACATCATTACTTCCAG  549

seq1  GCTCAGAAGAGGGGAAGCCTGCAGCATGGGGTTGGGGCAGTGTCATTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAAGAGGGGAAGCCTGCAGCATGGGGTTGGGGCAGTGTCATTCTT  599

seq1  TCACTAGGGACAGGAAGCAGATTAATGAGGGTTCTGCCTCCCTCAAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGGGACAGGAAGCAGATTAATGAGGGTTCTGCCTCCCTCAAGCTG  649

seq1  GCAGGCTTGAAGTATTTGGTTTTTTGTGGTTTTTTTTTTTTTTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTTGAAGTATTTGGTTTTTTGTGGTTTTTTTTTTTTTTTTTTTTT  699

seq1  TTTGGTTTTCCCCTGGATGAGAAGGAGCAGGGAATTC  737
      |||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTCCCCTGGATGAGAAGGAGCAGGGAATTC  736