BAC Information

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BAC

Clone NameB6Ng01-117G12
Chromosome18 (Build37)1 (Build37)
Map Location 35,362,849 - 35,364,02021,349,667 - 21,350,058
singlet/doubletsingletsinglet
Overlap geneCtnna1
Upstream geneLOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951
Downstream geneLrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117G12.bB6Ng01-117G12.g
ACCDH922154DH922155
length1,148742
definitionDH922154|Mus musculus domesticus DNA, BAC clone: B6Ng01-117G12, 5' end.DH922155|Mus musculus domesticus DNA, BAC clone: B6Ng01-117G12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,362,849 - 35,364,020)(21,349,667 - 21,350,058)
sequence
gaattctagaatcatttggttcacaatgaagcacttccagtttctagttg
tgggatctgactggactgacatgcttcaacagtaccaagttcatactttc
aaataagatcaaacaggatatagctacttagtcctggcacacagtgggta
cagaaggttcctttattatgtttacactaatgttattaaatatttacaac
taattcaacgagtgcttcctcaatttctactctatgattagtatataaaa
ttcacaggtctaggtcacctcccctccagaatttatagctactcaaaaat
aaaactagtaacacttaacaaataatataagagaataaacctggaaaata
tgggaggtggtgaatccctcatcactgaatctctctggccagccagacta
gccaaactgattaagtttagataaaactagatactgtatcaaaaagtaaa
actcgaaggtgctggagagatggctcagcagttacgagcacctggtactc
tcacagaggacccaggtttggttcccagtatccatgtgacagcctcccaa
ctgtctccttgcagttccaggagctctgacacctttagggaccagataaa
cagatagtacacacatatacactcatgtaaaaaaattaaatcttaaataa
ataaatctggagagcaactgagcaaagataccagatagaactaactctct
ggtctccacataaatgtgttcacagacaaagctgtatccacacagacata
cacacccatgttaacaacatactgtgagaagacagacagaaggaattaat
gtgataaataacaaaaggaaggaagaacatttttatacaagagaaacgaa
caggatgttgaggtactggggtaaaatatttaagaaaccattcacttatc
aagatgtatctaggacattctaattattttatgtatgaatgtttagctca
catgtatgtacagcctgatatgcatggagaccagcaggcatcagacctcc
tgacactggagtgagctaccgttgtaggtgctgggactaaacatgtcctc
tcaagagcagcagtgctctactcaccttttcaatcttatgttagtattta
tttttcttaatttgatgcatgccttggcagatgtctttaaccatgcat
gaattcagttcccagagcccatgctagacagctcaaagttgtctgtaact
cgagctcccgggaaatcaaagctctttctgacctccttagataccttctg
gactgtgagcatgtacatactcagacacaaataaaaatgaatcttatttt
ggtggagggtgttcgagacaggatttctctgtatagtcctggctgtcctg
gaactcactttgtagaccaggctggcctcgaactcagagatctgcctcca
caatgctaggattaaaggcctatgccaccacaactggcaaaaaacaaatc
tttaaatgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtat
ttcatcttccttcactgtcaggcagctgtacatgttttatttatttattt
atttggttttctgagacaggatttctctgtgtagccctggctgtcctgga
attcactttgtagcccaggctggccttgaagtcagaaatctgcctgcctc
tgcctcccaagtgctgggattaaaggcatgtgccaccactgcctggcaga
gaccatttatctttattgaagccctggctgtcctgagactcacagggatc
ctcctgaatgctaggattaaaggtgtgcttccttcaacattcagcctttc
aagcaaggtcttgtgtgttttatgataaagcataagtaagccacctgtcc
tgtgagttttgcttaagcactacaagccctttgtgggattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_35362849_35364020
seq2: B6Ng01-117G12.b_45_1192 (reverse)

seq1  ATGCATGTGGTATAAAGACATACATGCAGAGCCATGCATACAAAATTTAA  50
      |||||  |||| |||||||||   |||  || ||||||| ||||  ||||
seq2  ATGCA--TGGT-TAAAGACAT--CTGCCAAGGCATGCAT-CAAA--TTAA  42

seq1  GAAAAAATTAAATACTAAACAATAAAGATTGGAAAAAGGTTGAAGTTAAG  100
      ||||||  |||||||| ||||   |||||||  |||||||   |||  ||
seq2  GAAAAA--TAAATACT-AACA--TAAGATTG--AAAAGGT--GAGT--AG  81

seq1  AGCACTTGCTGCTCTTGTAGAGGACCTTGTTTTAGTTCCCAGCACCTAC-  149
      ||||| ||||||||||| ||||||| |   ||||| ||||||||||||| 
seq2  AGCAC-TGCTGCTCTTG-AGAGGACAT--GTTTAG-TCCCAGCACCTACA  126

seq1  ACGGTAGCTCACTCCAGTGTCAGGGGGTCTGATGCCCTGCTGGTCTCCAT  199
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  ACGGTAGCTCACTCCAGTGTCAGGAGGTCTGATG-CCTGCTGGTCTCCAT  175

seq1  GCATATCAGGCTGTACATACATGTGAGCTAAACATTCATACATAAAATAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCAGGCTGTACATACATGTGAGCTAAACATTCATACATAAAATAA  225

seq1  TTAGAATGTCCTAGATACATCTTGATAAGTGAATGGTTTCTTAAATATTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGTCCTAGATACATCTTGATAAGTGAATGGTTTCTTAAATATTT  275

seq1  TACCCCAGTACCTCAACATCCTGTTCGTTTCTCTTGTATAAAAATGTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCAGTACCTCAACATCCTGTTCGTTTCTCTTGTATAAAAATGTTCT  325

seq1  TCCTTCCTTTTGTTATTTATCACATTAATTCCTTCTGTCTGTCTTCTCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTTTGTTATTTATCACATTAATTCCTTCTGTCTGTCTTCTCAC  375

seq1  AGTATGTTGTTAACATGGGTGTGTATGTCTGTGTGGATACAGCTTTGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTTGTTAACATGGGTGTGTATGTCTGTGTGGATACAGCTTTGTCT  425

seq1  GTGAACACATTTATGTGGAGACCAGAGAGTTAGTTCTATCTGGTATCTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACACATTTATGTGGAGACCAGAGAGTTAGTTCTATCTGGTATCTTT  475

seq1  GCTCAGTTGCTCTCCAGATTTATTTATTTAAGATTTAATTTTTTTACATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTGCTCTCCAGATTTATTTATTTAAGATTTAATTTTTTTACATG  525

seq1  AGTGTATATGTGTGTACTATCTGTTTATCTGGTCCCTAAAGGTGTCAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATATGTGTGTACTATCTGTTTATCTGGTCCCTAAAGGTGTCAGAG  575

seq1  CTCCTGGAACTGCAAGGAGACAGTTGGGAGGCTGTCACATGGATACTGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGAACTGCAAGGAGACAGTTGGGAGGCTGTCACATGGATACTGGG  625

seq1  AACCAAACCTGGGTCCTCTGTGAGAGTACCAGGTGCTCGTAACTGCTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACCTGGGTCCTCTGTGAGAGTACCAGGTGCTCGTAACTGCTGAG  675

seq1  CCATCTCTCCAGCACCTTCGAGTTTTACTTTTTGATACAGTATCTAGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCCAGCACCTTCGAGTTTTACTTTTTGATACAGTATCTAGTTT  725

seq1  TATCTAAACTTAATCAGTTTGGCTAGTCTGGCTGGCCAGAGAGATTCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAACTTAATCAGTTTGGCTAGTCTGGCTGGCCAGAGAGATTCAGT  775

seq1  GATGAGGGATTCACCACCTCCCATATTTTCCAGGTTTATTCTCTTATATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGGATTCACCACCTCCCATATTTTCCAGGTTTATTCTCTTATATT  825

seq1  ATTTGTTAAGTGTTACTAGTTTTATTTTTGAGTAGCTATAAATTCTGGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTAAGTGTTACTAGTTTTATTTTTGAGTAGCTATAAATTCTGGAG  875

seq1  GGGAGGTGACCTAGACCTGTGAATTTTATATACTAATCATAGAGTAGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGACCTAGACCTGTGAATTTTATATACTAATCATAGAGTAGAAA  925

seq1  TTGAGGAAGCACTCGTTGAATTAGTTGTAAATATTTAATAACATTAGTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAAGCACTCGTTGAATTAGTTGTAAATATTTAATAACATTAGTGT  975

seq1  AAACATAATAAAGGAACCTTCTGTACCCACTGTGTGCCAGGACTAAGTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAATAAAGGAACCTTCTGTACCCACTGTGTGCCAGGACTAAGTAG  1025

seq1  CTATATCCTGTTTGATCTTATTTGAAAGTATGAACTTGGTACTGTTGAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCCTGTTTGATCTTATTTGAAAGTATGAACTTGGTACTGTTGAAG  1075

seq1  CATGTCAGTCCAGTCAGATCCCACAACTAGAAACTGGAAGTGCTTCATTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGTCCAGTCAGATCCCACAACTAGAAACTGGAAGTGCTTCATTG  1125

seq1  TGAACCAAATGATTCTAGAATTC  1172
      |||||||||||||||||||||||
seq2  TGAACCAAATGATTCTAGAATTC  1148

seq1: chr1_21349667_21350058
seq2: B6Ng01-117G12.g_416_810 (reverse)

seq1  ATAATCCC-CAAAGGGCTTGTAGTGCTTAAGCAAAACTCACAGGACAGGT  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCCACAAAGGGCTTGTAGTGCTTAAGCAAAACTCACAGGACAGGT  50

seq1  GGCTTACTTATGCTTTATCAT-AAACACAC-AGACCTTGCTTGAAAGGCT  97
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  GGCTTACTTATGCTTTATCATAAAACACACAAGACCTTGCTTGAAAGGCT  100

seq1  GAATGTTGAAGGAAGCACACCTTTAATCCTAGCATTCAGGAGGATCCCTG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTGAAGGAAGCACACCTTTAATCCTAGCATTCAGGAGGATCCCTG  150

seq1  TGAGTCTCAGGACAGCCAGGGCTTCAATAAAGATAAATGGTCTCTGCCAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTCAGGACAGCCAGGGCTTCAATAAAGATAAATGGTCTCTGCCAG  200

seq1  GCAGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  250

seq1  CAGATTTCTGACTTCAAGGCCAGCCTGGGCTACAAAGTGAATTCCAGGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCTGACTTCAAGGCCAGCCTGGGCTACAAAGTGAATTCCAGGAC  300

seq1  AGCCAGGGCTACACAGAGAAATCCTGTCTCAGAAAACCAAATAAATAAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTACACAGAGAAATCCTGTCTCAGAAAACCAAATAAATAAAT  350

seq1  AAATAAAACATGTACAGCTGCCTGACAGTGAAGGAAGATGAAATA  392
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACATGTACAGCTGCCTGACAGTGAAGGAAGATGAAATA  395