BAC Information

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BAC

Clone NameB6Ng01-117G23
Chromosome1 (Build37)
Map Location 143,259,833 - 143,357,971
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnt2, EG226472
Downstream geneLOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117G23.bB6Ng01-117G23.g
ACCDH922176DH922177
length1,0231,104
definitionDH922176|Mus musculus domesticus DNA, BAC clone: B6Ng01-117G23, 5' end.DH922177|Mus musculus domesticus DNA, BAC clone: B6Ng01-117G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,259,833 - 143,260,721)(143,356,861 - 143,357,971)
sequence
gaattcaaaaggtatgcttggaatccttccttttgtagtttccaaattca
gtaaaatgaagaggtgagttctgccttgtagtcagtattaagatactcta
ggtttctaggtgatcaaaaactaagctccagaacctgcaaatcacatctt
ctgatgggagaaacttgtcccagaaaagaaatactaatttacaaagggct
ttatctcaggcttagggactttgctctgggtgagactggttgctttcaga
gatttaggaaatgataaaagcctttttattaagtggaaattcttcaaaat
ttaccttaaaatcaagcctgtgggataaaacagacagctggccaggtcac
agattagttatgacattctgttttccttaatcaggacaagagagacagca
ggaacagcctggaaatttaccaaagattaaattgtctaggggggaatggc
tggtattgagggaaattttgcaagagatgtgaaaactttgtgcagtagaa
atcccctggaatctataaggctgaccttagtaaagacttctagtaaaggc
ctttatggatcctgaacaagccatcttctgtgatcaggcaagtcttccag
tagtaggactgggtcatcaaaccatccacaaaatcttcaatttaaaattt
tcctgcctgcaaggtgtactggggtaaatgtgtcatagtatttgtgggag
ggtgtccaaccaatgattggcccaacctgaggcccacaccgtacctgaca
ctgcctaaatggccacgaaccagaggctgcatagcccagaggcctaggat
agaaacaaacacaaacgcacaaaatcaatgcaatgatttctagtgatatt
cgtgtatattcacagacaggagcttagaaaggcttcatccaccacatgat
gtgggcagatgatgtacccgcagccaacatcagagctcacatacactgag
gaagatgggaaagaagaatcgtagaatcttagagggataaaaaagcatca
ctagaggccgggcaggtggtggg
gaattcatattttaagaactaggaagaaagtagattcaaaggaaaagtgt
aagatgtcaatgtgttataaaataaaatagcaattcgtatgctaattcat
tgtgaaataagtatagcaattaagatggtagaacttgttattctcaaagt
atagtctgtatatcaaattatcaatttactaaagataatattatatccta
gagattcaaccacatttgttaaatggtaggattcatttgttggtatgact
gaataatgttctattgtatatctatgcaacttgatccattcgtctatgaa
cagatatcatcaataggccaattccatattttgcaacagtgatacaacaa
acctgagagtacacaaatattttcatgcactgtcaacttctcctttagat
atataattaatggtggaataaatgaaaataaaaatggcacaaaatgcaaa
cgataaatatattgcccctataaggaaactaggtaacttgatctattatt
tcatatgtcatatggaatcatagttactggaagatgagaataaccaggtt
agttttcatatacaaaacctttgttgcaaatgagtggtaggttttatatt
tctacagttctattttagtgaggattaaaaattagagtgaaaaagaagtt
tcttgtttcctaaaacaagaaaatgctacattttcaacataatggatatg
ttaccctgcttgtcattaaacactttcacattatacataaattttacatt
gtacccaataaatatatggcattattgaaaaatcaaaagaaaagtgtaaa
catcataaagcttctagaaagacgtgagctttgggaaatatgatgaaagc
caagaatttaaaaatagttacatgagtaaaatgcaggttagcttattatt
atgcatagaaactttccagccagaatgctgaaaatgacatgtctcaggct
cttaaacgtgatctgctaagaaagattcagttaaagacaggactggctct
tgccacagtcatgccctcaggacagatcatcacatccccccatcttcgca
acccccaggtcagctctactgtgaggtcagtgatggagagctgttctagt
gact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_143259833_143260721
seq2: B6Ng01-117G23.b_45_933

seq1  GAATTCAAAAGGTATGCTTGGAATCCTTCCTTTTGTAGTTTCCAAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGGTATGCTTGGAATCCTTCCTTTTGTAGTTTCCAAATTCA  50

seq1  GTAAAATGAAGAGGTGAGTTCTGCCTTGTAGTCAGTATTAAGATACTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGAAGAGGTGAGTTCTGCCTTGTAGTCAGTATTAAGATACTCTA  100

seq1  GGTTTCTAGGTGATCAAAAACTAAGCTCCAGAACCTGCAAATCACATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTAGGTGATCAAAAACTAAGCTCCAGAACCTGCAAATCACATCTT  150

seq1  CTGATGGGAGAAACTTGTCCCAGAAAAGAAATACTAATTTACAAAGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGGAGAAACTTGTCCCAGAAAAGAAATACTAATTTACAAAGGGCT  200

seq1  TTATCTCAGGCTTAGGGACTTTGCTCTGGGTGAGACTGGTTGCTTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAGGCTTAGGGACTTTGCTCTGGGTGAGACTGGTTGCTTTCAGA  250

seq1  GATTTAGGAAATGATAAAAGCCTTTTTATTAAGTGGAAATTCTTCAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGGAAATGATAAAAGCCTTTTTATTAAGTGGAAATTCTTCAAAAT  300

seq1  TTACCTTAAAATCAAGCCTGTGGGATAAAACAGACAGCTGGCCAGGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTAAAATCAAGCCTGTGGGATAAAACAGACAGCTGGCCAGGTCAC  350

seq1  AGATTAGTTATGACATTCTGTTTTCCTTAATCAGGACAAGAGAGACAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGTTATGACATTCTGTTTTCCTTAATCAGGACAAGAGAGACAGCA  400

seq1  GGAACAGCCTGGAAATTTACCAAAGATTAAATTGTCTAGGGGGGAATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGCCTGGAAATTTACCAAAGATTAAATTGTCTAGGGGGGAATGGC  450

seq1  TGGTATTGAGGGAAATTTTGCAAGAGATGTGAAAACTTTGTGCAGTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTGAGGGAAATTTTGCAAGAGATGTGAAAACTTTGTGCAGTAGAA  500

seq1  ATCCCCTGGAATCTATAAGGCTGACCTTAGTAAAGACTTCTAGTAAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTGGAATCTATAAGGCTGACCTTAGTAAAGACTTCTAGTAAAGGC  550

seq1  CTTTATGGATCCTGAACAAGCCATCTTCTGTGATCAGGCAAGTCTTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGGATCCTGAACAAGCCATCTTCTGTGATCAGGCAAGTCTTCCAG  600

seq1  TAGTAGGACTGGGTCATCAAACCATCCACAAAATCTTCAATTTAAAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGACTGGGTCATCAAACCATCCACAAAATCTTCAATTTAAAATTT  650

seq1  TCCTGCCTGCAAGGTGTACTGGGGTAAATGTGTCATAGTATTTGTGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTGCAAGGTGTACTGGGGTAAATGTGTCATAGTATTTGTGGGAG  700

seq1  GGTGTCCAACCAATGATTGGCCCAACCTGAGGCCCACACCGTACCTGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCAACCAATGATTGGCCCAACCTGAGGCCCACACCGTACCTGACA  750

seq1  CTGCCTAAATGGCCACGAACCAGAGGCTGCATAGCCCAGAGGCCTAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAAATGGCCACGAACCAGAGGCTGCATAGCCCAGAGGCCTAGGAT  800

seq1  AGAAACAAACACAAACGCACAAAATCAATGCAATGATTTCTAGTGATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAACACAAACGCACAAAATCAATGCAATGATTTCTAGTGATATT  850

seq1  CGTGTATATTCACAGACAGGAGCTTAGAAAGGCTTCATC  889
      |||||||||||||||||||||||||||||||||||||||
seq2  CGTGTATATTCACAGACAGGAGCTTAGAAAGGCTTCATC  889

seq1: chr1_143356861_143357971
seq2: B6Ng01-117G23.g_65_1168 (reverse)

seq1  AGTCACCTAGAACAGGCTCTACATCACTTGAACCTCACAGTAGAGCTGAC  50
      ||||| |||||||| ||||| |||||||   |||||||||||||||||| 
seq2  AGTCA-CTAGAACA-GCTCTCCATCACT--GACCTCACAGTAGAGCTGA-  45

seq1  CCTGGGGGTTGCG-AGATGGGGGGATTGTGGATGATCTGTCCTGAGGGCA  99
      ||||||||||||| ||||||||||| ||| ||||||||||||||||||||
seq2  CCTGGGGGTTGCGAAGATGGGGGGA-TGT-GATGATCTGTCCTGAGGGCA  93

seq1  TGACTGTGGC-AGAGCCAGTCCTGTCTTTAACTGGAATTCTTTCTTAGCA  148
      |||||||||| |||||||||||||||||||||||  | ||||||||||||
seq2  TGACTGTGGCAAGAGCCAGTCCTGTCTTTAACTG--AATCTTTCTTAGCA  141

seq1  GATCACGTTTAAGGAGCCTGAGACATGTCATTTTCAGCATTCTGGCTGGA  198
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATCACGTTTAA-GAGCCTGAGACATGTCATTTTCAGCATTCTGGCTGGA  190

seq1  AAGTTTCTATGCATAATAATAAGCTAACCTGCATTTTACTCATGTAACTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTATGCATAATAATAAGCTAACCTGCATTTTACTCATGTAACTA  240

seq1  TTTTTAAATTCTTGGCTTTCATCATATTT-CCAAAGCTCACGTCTTTCTA  297
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTTAAATTCTTGGCTTTCATCATATTTCCCAAAGCTCACGTCTTTCTA  290

seq1  GAAGCTTTATGATGTTTACACTTTTCTTTTGATTTTTCAATAATGCCATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTATGATGTTTACACTTTTCTTTTGATTTTTCAATAATGCCATA  340

seq1  TATTTATTGGGTACAATGTAAAATTTATGTATAATGTGAAAGTGTTTAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTGGGTACAATGTAAAATTTATGTATAATGTGAAAGTGTTTAAT  390

seq1  GACAAGCAGGGTAACATATCCATTATGTTGAAAATGTAGCATTTTCTTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCAGGGTAACATATCCATTATGTTGAAAATGTAGCATTTTCTTGT  440

seq1  TTTAGGAAACAAGAAACTTCTTTTTCACTCTAATTTTTAATCCTCACTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAAACAAGAAACTTCTTTTTCACTCTAATTTTTAATCCTCACTAA  490

seq1  AATAGAACTGTAGAAATATAAAACCTACCACTCATTTGCAACAAAGGTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAACTGTAGAAATATAAAACCTACCACTCATTTGCAACAAAGGTTT  540

seq1  TGTATATGAAAACTAACCTGGTTATTCTCATCTTCCAGTAACTATGATTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGAAAACTAACCTGGTTATTCTCATCTTCCAGTAACTATGATTC  590

seq1  CATATGACATATGAAATAATAGATCAAGTTACCTAGTTTCCTTATAGGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGACATATGAAATAATAGATCAAGTTACCTAGTTTCCTTATAGGGG  640

seq1  CAATATATTTATCGTTTGCATTTTGTGCCATTTTTATTTTCATTTATTCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATTTATCGTTTGCATTTTGTGCCATTTTTATTTTCATTTATTCC  690

seq1  ACCATTAATTATATATCTAAAGGAGAAGTTGACAGTGCATGAAAATATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAATTATATATCTAAAGGAGAAGTTGACAGTGCATGAAAATATTT  740

seq1  GTGTACTCTCAGGTTTGTTGTATCACTGTTGCAAAATATGGAATTGGCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTCTCAGGTTTGTTGTATCACTGTTGCAAAATATGGAATTGGCCT  790

seq1  ATTGATGATATCTGTTCATAGACGAATGGATCAAGTTGCATAGATATACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGATATCTGTTCATAGACGAATGGATCAAGTTGCATAGATATACA  840

seq1  ATAGAACATTATTCAGTCATACCAACAAATGAATCCTACCATTTAACAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACATTATTCAGTCATACCAACAAATGAATCCTACCATTTAACAAA  890

seq1  TGTGGTTGAATCTCTAGGATATAATATTATCTTTAGTAAATTGATAATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGAATCTCTAGGATATAATATTATCTTTAGTAAATTGATAATTT  940

seq1  GATATACAGACTATACTTTGAGAATAACAAGTTCTACCATCTTAATTGCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACAGACTATACTTTGAGAATAACAAGTTCTACCATCTTAATTGCT  990

seq1  ATACTTATTTCACAATGAATTAGCATACGAATTGCTATTTTATTTTATAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATTTCACAATGAATTAGCATACGAATTGCTATTTTATTTTATAA  1040

seq1  CACATTGACATCTTACACTTTTCCTTTGAATCTACTTTCTTCCTAGTTCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGACATCTTACACTTTTCCTTTGAATCTACTTTCTTCCTAGTTCT  1090

seq1  TAAAATATGAATTC  1111
      ||||||||||||||
seq2  TAAAATATGAATTC  1104