BAC Information

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BAC

Clone NameB6Ng01-118N15
Chromosome1 (Build37)
Map Location 81,615,991 - 81,755,863
singlet/doubletdoublet
Overlap geneEG621020, LOC433328
Upstream geneDock10, LOC665092, 9430031J16Rik
Downstream geneEG665145, Irs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118N15.bB6Ng01-118N15.g
ACCDH923224DH923225
length1,174316
definitionDH923224|Mus musculus domesticus DNA, BAC clone: B6Ng01-118N15, 5' end.DH923225|Mus musculus domesticus DNA, BAC clone: B6Ng01-118N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,754,681 - 81,755,863)(81,615,991 - 81,616,306)
sequence
gaattctcagctctttctctagcatcatgtctgcctgcatgctgccatgt
tcccccaccatgatggtagtggactaaacctctgaaaatgtaagccagcc
ccaattaaacgtttttaaataagagttgttttagtcatggcatcttttca
cagcaataaaacagacagtttataagcacacatttatacaattatatgca
atatacacaaaggcaacaaatgtggaataaactgttactgtcttcattag
ctttaatagctggtagcacctgagctcctgggagcacactcatattctta
ctgtttctccttggacagaagtgttaccttggataacctgtctgagtttt
ataaccgactttccaaattgtacaagtgactctgaagtgcaaaccacaat
ggaaaagatccagattcacattcttgtctgtgcaatacaatgtcttggtt
gtttgccaactttattcattgttcagaatagtttatagaaatgtccatgt
atgccagtattgagtactggcaccaatgtgtcctcctttatatttattgt
tggtagctactaagataatttggaaaggaagagatcagtatccattgaat
agtgtacctctgcccaggagatctcttattatcctaaacatataattaat
ttgtagcatgtaggatccatctgaaatcgaccactgcagaataaaggaat
gaaccaaggcgtatggggacttgctgataggaaatattgttactctcagt
ttctgttcttagtttccataaatctttcgatgcctcaatggcttcattac
aagtgtcactgactagtcatttggaatttcccgtgactccaaggcattta
aacacagtgtggtataatggaaagaacgcaatagcatacatttctatggt
cagcacctattgtaactttaggatattagatcaaaatagcagaaagtgtg
attatgtaatagtcactggggaatgtaaagagatttctgtttgaggagat
cagcatctacttacatctgtcctcatattggttaaagaagaaaagcagtt
taagaaaatattcacagtttcatgacatagaaagattgtcattagctggg
cagtgccagtgcacacttatcccagcatcaggaggcagaggggcagttct
gtgttcaggctagccctagtctac
acctgaaaactgatcatctgactagttaggtaggagtctaaccacccata
aagacctccaaggttctgaatggacttgctcaggaatcctacataagaat
gagctaggtacaaagactgattcacgcctataaactcagagtttgagatg
ctcaggcaagaggcttgctgtgagtttgaagccaacctgatctacatagg
gagttccaggccagtctgggctcagtgtcacaccatgtttcaaagtaaaa
tgtaaataaaatgagagacaaggagggaaaagaggaagggagaggagagg
aaggaaggggagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_81754681_81755863
seq2: B6Ng01-118N15.b_49_1222 (reverse)

seq1  GTAGACTA-GGCTAGCCCTGAACGCACAGAACTGCCGCCTCTGCCTCCTG  49
      |||||||| |||||| ||||||  |||||||||||| |||||||||||| 
seq2  GTAGACTAGGGCTAG-CCTGAA--CACAGAACTGCC-CCTCTGCCTCCT-  45

seq1  GATGCTGGGATTAAAGGTGTGCACTGGCACTGCCCAGCTAATGACAATCT  99
      |||||||||||   | ||||||||||||||||||||||||||||||||||
seq2  GATGCTGGGAT---AAGTGTGCACTGGCACTGCCCAGCTAATGACAATCT  92

seq1  TTCTAATGTCATGGAAACTGTTGATATTTTCTTAAACTGCTTTTCTTCTT  149
      |||| ||||||| ||||||||  |||||||||||||||||||||||||||
seq2  TTCT-ATGTCAT-GAAACTGTGAATATTTTCTTAAACTGCTTTTCTTCTT  140

seq1  TAACCAATATGAGGACAGATGTAAGTAGATGCTGATCTCCTCAAACAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAATATGAGGACAGATGTAAGTAGATGCTGATCTCCTCAAACAGAA  190

seq1  ATCTCTTTACATTCCCCAGTGACTATTACATAATCACACTTTCTGCTATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTACATTCCCCAGTGACTATTACATAATCACACTTTCTGCTATT  240

seq1  TTGATCTAATATCCTAAAGTTACAATAGGTGCTGACCATAG-AATGTATG  298
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGATCTAATATCCTAAAGTTACAATAGGTGCTGACCATAGAAATGTATG  290

seq1  CTATTTGCGTTCTTTCCATTATACCACACTGTGTTTAAATGCCTTGGAGT  348
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTA-TTGCGTTCTTTCCATTATACCACACTGTGTTTAAATGCCTTGGAGT  339

seq1  CACGGGAAATTCCAAATGACTAGTCAGTGACACTTGTAATGAAGCCATTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGAAATTCCAAATGACTAGTCAGTGACACTTGTAATGAAGCCATTG  389

seq1  AGGCATCGAAAGATTTATGGAAACTAAGAACAGAAACTGAGAGTAACAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCGAAAGATTTATGGAAACTAAGAACAGAAACTGAGAGTAACAAT  439

seq1  ATTTCCTATCAGCAAGTCCCCATACGCCTTGGTTCATTCCTTTATTCTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTATCAGCAAGTCCCCATACGCCTTGGTTCATTCCTTTATTCTGC  489

seq1  AGTGGTCGATTTCAGATGGATCCTACATGCTACAAATTAATTATATGTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCGATTTCAGATGGATCCTACATGCTACAAATTAATTATATGTTT  539

seq1  AGGATAATAAGAGATCTCCTGGGCAGAGGTACACTATTCAATGGATACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAATAAGAGATCTCCTGGGCAGAGGTACACTATTCAATGGATACTG  589

seq1  ATCTCTTCCTTTCCAAATTATCTTAGTAGCTACCAACAATAAATATAAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCCTTTCCAAATTATCTTAGTAGCTACCAACAATAAATATAAAG  639

seq1  GAGGACACATTGGTGCCAGTACTCAATACTGGCATACATGGACATTTCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACACATTGGTGCCAGTACTCAATACTGGCATACATGGACATTTCTA  689

seq1  TAAACTATTCTGAACAATGAATAAAGTTGGCAAACAACCAAGACATTGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATTCTGAACAATGAATAAAGTTGGCAAACAACCAAGACATTGTA  739

seq1  TTGCACAGACAAGAATGTGAATCTGGATCTTTTCCATTGTGGTTTGCACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGACAAGAATGTGAATCTGGATCTTTTCCATTGTGGTTTGCACT  789

seq1  TCAGAGTCACTTGTACAATTTGGAAAGTCGGTTATAAAACTCAGACAGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTCACTTGTACAATTTGGAAAGTCGGTTATAAAACTCAGACAGGT  839

seq1  TATCCAAGGTAACACTTCTGTCCAAGGAGAAACAGTAAGAATATGAGTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAGGTAACACTTCTGTCCAAGGAGAAACAGTAAGAATATGAGTGT  889

seq1  GCTCCCAGGAGCTCAGGTGCTACCAGCTATTAAAGCTAATGAAGACAGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAGGAGCTCAGGTGCTACCAGCTATTAAAGCTAATGAAGACAGTA  939

seq1  ACAGTTTATTCCACATTTGTTGCCTTTGTGTATATTGCATATAATTGTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTATTCCACATTTGTTGCCTTTGTGTATATTGCATATAATTGTAT  989

seq1  AAATGTGTGCTTATAAACTGTCTGTTTTATTGCTGTGAAAAGATGCCATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTGCTTATAAACTGTCTGTTTTATTGCTGTGAAAAGATGCCATG  1039

seq1  ACTAAAACAACTCTTATTTAAAAACGTTTAATTGGGGCTGGCTTACATTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAACAACTCTTATTTAAAAACGTTTAATTGGGGCTGGCTTACATTT  1089

seq1  TCAGAGGTTTAGTCCACTACCATCATGGTGGGGGAACATGGCAGCATGCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTTTAGTCCACTACCATCATGGTGGGGGAACATGGCAGCATGCA  1139

seq1  GGCAGACATGATGCTAGAGAAAGAGCTGAGAATTC  1183
      |||||||||||||||||||||||||||||||||||
seq2  GGCAGACATGATGCTAGAGAAAGAGCTGAGAATTC  1174

seq1: chr1_81615991_81616306
seq2: B6Ng01-118N15.g_74_389

seq1  ACCTGAAAACTGATCATCTGACTAGTTAGGTAGGAGTCTAACCACCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAACTGATCATCTGACTAGTTAGGTAGGAGTCTAACCACCCATA  50

seq1  AAGACCTCCAAGGTTCTGAATGGACTTGCTCAGGAATCCTACATAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTCCAAGGTTCTGAATGGACTTGCTCAGGAATCCTACATAAGAAT  100

seq1  GAGCTAGGTACAAAGACTGATTCACGCCTATAAACTCAGAGTTTGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGGTACAAAGACTGATTCACGCCTATAAACTCAGAGTTTGAGATG  150

seq1  CTCAGGCAAGAGGCTTGCTGTGAGTTTGAAGCCAACCTGATCTACATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCAAGAGGCTTGCTGTGAGTTTGAAGCCAACCTGATCTACATAGG  200

seq1  GAGTTCCAGGCCAGTCTGGGCTCAGTGTCACACCATGTTTCAAAGTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGGCCAGTCTGGGCTCAGTGTCACACCATGTTTCAAAGTAAAA  250

seq1  TGTAAATAAAATGAGAGACAAGGAGGGAAAAGAGGAAGGGAGAGGAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATAAAATGAGAGACAAGGAGGGAAAAGAGGAAGGGAGAGGAGAGG  300

seq1  AAGGAAGGGGAGGGGA  316
      ||||||||||||||||
seq2  AAGGAAGGGGAGGGGA  316