BAC Information

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BAC

Clone NameB6Ng01-120B04
Chromosome1 (Build37)
Map Location 60,801,485 - 60,946,191
singlet/doubletdoublet
Overlap geneCd28, LOC667555
Upstream geneB430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4
Downstream geneRpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566, Pard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120B04.bB6Ng01-120B04.g
ACCDH924113DH924114
length1,0791,104
definitionDH924113|Mus musculus domesticus DNA, BAC clone: B6Ng01-120B04, 5' end.DH924114|Mus musculus domesticus DNA, BAC clone: B6Ng01-120B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,801,485 - 60,802,562)(60,945,075 - 60,946,191)
sequence
gaattctctgcttagacctgtatcccattttaaagttaaattatttagtt
tgctgatgtctagtttcttgagttctttaaatattttggatgttagccct
ctgtcagatgtgaattttgtgaaaatctttttctattctgtatactgcca
ttgagagagaagtcagctacacaaagacaagtatcacataatttcatcca
attgaagataaaaaaacaaacaaacaaaccaaaacaaaacaaaaaaacat
tcattgcctagaatcagagagtagaatcgggtattatggtccacatctat
aatactagcatttaagaggttgtgtcaagaggattacaagtttgaggcca
gcctgatctacagagcgagttccaggacagccaggactacacaaagaaac
cctgtctcgaaaaataaaatatgtatatatgcctataaaacatcatatgg
tatttgactgatacgtttaatatttaagttttatataccagctaaaatgt
aataaaaatatttatatcatatatggatgccttagaaattaacaattgat
aacatatctattgaaaactataaacaaaacaacatggaaagtaatggctc
aaatattaagtatttttataattcggtaagaatataggtaaaccttgact
ttatgcttatatttttttctaaatttttttacgtatgcaatatagctcac
ttttgtattcagaataaaaaatataaatcattcttttaaatatacacaaa
atcacaaatgaggctggtttcacaaagctcagattatcagaaaagaaaga
aaaaaaatcaccaagaaagttttgagaaagctaatgtgtatgagatacat
ataaccacaaactccgatgattatagcttctatagagtcagactatcagg
gaagctgttgagtacagatgctgaccagggggatccaggatggctctaga
agaggaatgtggagctggccatgctggtgggctagccctgtctacagagc
ccaggagttggggagaggtgttggagagctggtacaaaggccccgggctg
cttctggtggtgaatcctttcaatggtca
gaattcttggttatccaacctcacagtctagccagcctctttgatcaagc
ccctcaaaatccaatcccacgagtgtttgctcaattcctgtcaacctaat
gattgtgatttttcaccacacaacctcccttttaattaaccaggcccaac
atgcctcagtcatggcactgagagttaatccaagctacaggcttggaagg
caggagaggaggtaaggagagcatcttgaatgtggtttctcttctgagaa
tgagacttttttttttcttttcttctgagacaaggtgtcactatgtaggt
ctctctggcctgaaactctctatgcagattaggctggcccacaacttctt
atcttgatctgcctgcctctcgagtgctatcattaaagatgtacaccacc
atgcccatcaagtatgagatttctgtcctatcttctagcaccttagaatt
gatatttctttctttgcccattgagccacttctgtaagcccaggacactc
tgaaaggtgaaataatctgcctcttcaggtatctctatagtgccaggcca
atcaaacaatctctatagctctatggttctgaccagatctttaatctgcc
cctcatctatatatatcctgtgacagaagacatctacctcttgagaatta
ccatagaagccctcaagcactcacatatgaataaggtgtccatgatgtct
ggcttttatcaacttgacacaagttagagtttgagaggaggaagcatcag
ttgggaaaatgcctccataagatctatcttcttgtagacattttcttttt
tcttttttgttttttcaagacagtgtttctctgtatagtcctggctttcc
tggaactcactctgcagaccaggctggcctcaaacacagaaatctgcctg
cctctgcctcctaagtgctgggattaaaggcatgggccaccactgcctgg
cgtagatattttcttgattagtaattgatggtgccaccctggctggttct
gattctacaagaagcaggctaagcagcaatggaggacagcagttagcagg
acccctcctgaatcagctctgcttccaggtctaactggtgagttctgtct
gact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_60801485_60802562
seq2: B6Ng01-120B04.b_49_1126

seq1  GAATTCTCTGCTTAGACCTGTATCCCATTTTAAAGTTAAATTATTTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTTAGACCTGTATCCCATTTTAAAGTTAAATTATTTAGTT  50

seq1  TGCTGATGTCTAGTTTCTTGAGTTCTTTAAATATTTTGGATGTTAGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGTCTAGTTTCTTGAGTTCTTTAAATATTTTGGATGTTAGCCCT  100

seq1  CTGTCAGATGTGAATTTTGTGAAAATCTTTTTCTATTCTGTATACTGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGATGTGAATTTTGTGAAAATCTTTTTCTATTCTGTATACTGCCA  150

seq1  TTGAGAGAGAAGTCAGCTACACAAAGACAAGTATCACATAATTTCATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGAGAAGTCAGCTACACAAAGACAAGTATCACATAATTTCATCCA  200

seq1  ATTGAAGATAAAAAAACAAACAAACAAACCAAAACAAAACAAAAAAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGATAAAAAAACAAACAAACAAACCAAAACAAAACAAAAAAACAT  250

seq1  TCATTGCCTAGAATCAGAGAGTAGAATCGGGTATTATGGTCCACATCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCCTAGAATCAGAGAGTAGAATCGGGTATTATGGTCCACATCTAT  300

seq1  AATACTAGCATTTAAGAGGTTGTGTCAAGAGGATTACAAGTTTGAGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAGCATTTAAGAGGTTGTGTCAAGAGGATTACAAGTTTGAGGCCA  350

seq1  GCCTGATCTACAGAGCGAGTTCCAGGACAGCCAGGACTACACAAAGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATCTACAGAGCGAGTTCCAGGACAGCCAGGACTACACAAAGAAAC  400

seq1  CCTGTCTCGAAAAATAAAATATGTATATATGCCTATAAAACATCATATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCGAAAAATAAAATATGTATATATGCCTATAAAACATCATATGG  450

seq1  TATTTGACTGATACGTTTAATATTTAAGTTTTATATACCAGCTAAAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGACTGATACGTTTAATATTTAAGTTTTATATACCAGCTAAAATGT  500

seq1  AATAAAAATATTTATATCATATATGGATGCCTTAGAAATTAACAATTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATATTTATATCATATATGGATGCCTTAGAAATTAACAATTGAT  550

seq1  AACATATCTATTGAAAACTATAAACAAAACAACATGGAAAGTAATGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATCTATTGAAAACTATAAACAAAACAACATGGAAAGTAATGGCTC  600

seq1  AAATATTAAGTATTTTTATAATTCGGTAAGAATATAGGTAAACCTTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAAGTATTTTTATAATTCGGTAAGAATATAGGTAAACCTTGACT  650

seq1  TTATGCTTATATTTTTTTCTAAATTTTTTTACGTATGCAATATAGCTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTTATATTTTTTTCTAAATTTTTTTACGTATGCAATATAGCTCAC  700

seq1  TTTTGTATTCAGAATAAAAAATATAAATCATTCTTTTAAATATACACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATTCAGAATAAAAAATATAAATCATTCTTTTAAATATACACAAA  750

seq1  ATCACAAATGAGGCTGGTTTCACAAAGCTCAGATTATCAGAAAAGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAATGAGGCTGGTTTCACAAAGCTCAGATTATCAGAAAAGAAAGA  800

seq1  AAAAAAATCACCAAGAAAGTTTTGAGAAAGCTAATGTGTATGAGATACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCACCAAGAAAGTTTTGAGAAAGCTAATGTGTATGAGATACAT  850

seq1  ATAACCACAAACTCCGATGATTATAGCTTCTATAAGAGTCAGACTATCAG  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATAACCACAAACTCCGATGATTATAGCTTCTAT-AGAGTCAGACTATCAG  899

seq1  GGAAGCTGTTGAGTACAGATGCTGACCAGGGGGATCCAGGATGGCTCTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGTTGAGTACAGATGCTGACCAGGGGGATCCAGGATGGCTCTAG  949

seq1  AAGAGGAATGTGGAGCTGGCCATGCTGGTGGGCTAGCCCTGTCTACAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGAGGAATGTGGAGCTGGCCATGCTGGTGGGCTAGCCCTGTCTACAGA-  998

seq1  GGCCCAGGAGTTGGGGAGAGGTG-TGGAGAGCTGGTTACAAAGGCCCCGG  1049
       |||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  -GCCCAGGAGTTGGGGAGAGGTGTTGGAGAGCTGG-TACAAAGGCCCCGG  1046

seq1  G-TGTCTCT-GTGGTGAAT-CTTCCAATGGTC  1078
      | ||  ||| ||||||||| ||| ||||||||
seq2  GCTGCTTCTGGTGGTGAATCCTTTCAATGGTC  1078

seq1: chr1_60945075_60946191
seq2: B6Ng01-120B04.g_67_1170 (reverse)

seq1  AGTCAGGACAGGAACTCAAACAGGTTAGGAACCTGGAGGCAGAAGCTGAT  50
      ||||| |||| ||||||  ||  |||||  ||||||| |||| |||||||
seq2  AGTCA-GACA-GAACTC--ACCAGTTAG--ACCTGGAAGCAG-AGCTGAT  43

seq1  TCAGGAGGGGTCCTGCTTACTGGCTTGTTCCTCATTGCTTGCTTAGCCTG  100
      ||||||||||||||||| ||||   ||| |  |||||| |||||||||||
seq2  TCAGGAGGGGTCCTGCTAACTG--CTGTCCTCCATTGC-TGCTTAGCCTG  90

seq1  CTTTCTTGTAGAATTCAGGACCAGCCCAGGGTGGCACCATCAATTACTAA  150
      | ||||||||||| |||| ||||| |||||||||||||||||||||||||
seq2  C-TTCTTGTAGAA-TCAGAACCAG-CCAGGGTGGCACCATCAATTACTAA  137

seq1  TCAAGAAAATATCTACGCCAGGCAGTGGTGGCCCATGCCTTTAATCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAAATATCTACGCCAGGCAGTGGTGGCCCATGCCTTTAATCCCAG  187

seq1  CACTTAGGAGGCAGAGGCAGGCAGATTTCTGTGTTTGAGGCCAGCCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGGAGGCAGAGGCAGGCAGATTTCTGTGTTTGAGGCCAGCCTGGT  237

seq1  CTGCAGAGTGAGTTCCAGGAAAGCCAGGACTATACAGAGAAACACTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGTGAGTTCCAGGAAAGCCAGGACTATACAGAGAAACACTGTCT  287

seq1  TGAAAAAACAAAAAAGAAAAAAGAAAATGTCTACAAGAAGATAGATCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAACAAAAAAGAAAAAAGAAAATGTCTACAAGAAGATAGATCTTA  337

seq1  TGGAGGCATTTTCCCAACTGATGCTTCCTCCTCTCAAACTCTAACTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCATTTTCCCAACTGATGCTTCCTCCTCTCAAACTCTAACTTGTG  387

seq1  TCAAGTTGATAAAAGCCAGACATCATGGACACCTTATTCATATGTGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTGATAAAAGCCAGACATCATGGACACCTTATTCATATGTGAGTG  437

seq1  CTTGAGGGCTTCTATGGTAATTCTCAAGAGGTAGATGTCTTCTGTCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGGCTTCTATGGTAATTCTCAAGAGGTAGATGTCTTCTGTCACAG  487

seq1  GATATATATAGATGAGGGGCAGATTAAAGATCTGGTCAGAACCATAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATATAGATGAGGGGCAGATTAAAGATCTGGTCAGAACCATAGAGC  537

seq1  TATAGAGATTGTTTGATTGGCCTGGCACTATAGAGATACCTGAAGAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGATTGTTTGATTGGCCTGGCACTATAGAGATACCTGAAGAGGCA  587

seq1  GATTATTTCACCTTTCAGAGTGTCCTGGGCTTACAGAAGTGGCTCAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTCACCTTTCAGAGTGTCCTGGGCTTACAGAAGTGGCTCAATGG  637

seq1  GCAAAGAAAGAAATATCAATTCTAAGGTGCTAGAAGATAGGACAGAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAAAGAAATATCAATTCTAAGGTGCTAGAAGATAGGACAGAAATC  687

seq1  TCATACTTGATGGGCATGGTGGTGTACATCTTTAATGATAGCACTCGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTTGATGGGCATGGTGGTGTACATCTTTAATGATAGCACTCGAGA  737

seq1  GGCAGGCAGATCAAGATAAGAAGTTGTGGGCCAGCCTAATCTGCATAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCAGATCAAGATAAGAAGTTGTGGGCCAGCCTAATCTGCATAGAG  787

seq1  AGTTTCAGGCCAGAGAGACCTACATAGTGACACCTTGTCTCAGAAGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGGCCAGAGAGACCTACATAGTGACACCTTGTCTCAGAAGAAAA  837

seq1  GAAAAAAAAAAGTCTCATTCTCAGAAGAGAAACCACATTCAAGATGCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAGTCTCATTCTCAGAAGAGAAACCACATTCAAGATGCTCT  887

seq1  CCTTACCTCCTCTCCTGCCTTCCAAGCCTGTAGCTTGGATTAACTCTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCTCCTCTCCTGCCTTCCAAGCCTGTAGCTTGGATTAACTCTCAG  937

seq1  TGCCATGACTGAGGCATGTTGGGCCTGGTTAATTAAAAGGGAGGTTGTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGACTGAGGCATGTTGGGCCTGGTTAATTAAAAGGGAGGTTGTGT  987

seq1  GGTGAAAAATCACAATCATTAGGTTGACAGGAATTGAGCAAACACTCGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAAATCACAATCATTAGGTTGACAGGAATTGAGCAAACACTCGTG  1037

seq1  GGATTGGATTTTGAGGGGCTTGATCAAAGAGGCTGGCTAGACTGTGAGGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGATTTTGAGGGGCTTGATCAAAGAGGCTGGCTAGACTGTGAGGT  1087

seq1  TGGATAACCAAGAATTC  1117
      |||||||||||||||||
seq2  TGGATAACCAAGAATTC  1104