BAC Information

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BAC

Clone NameB6Ng01-121G16
Chromosome1 (Build37)1 (Build37)
Map Location 169,912,812 - 169,913,86455,141,555 - 55,142,631
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneC030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genePbx1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121G16.bB6Ng01-121G16.g
ACCDH925106DH925107
length1,1611,062
definitionDH925106|Mus musculus domesticus DNA, BAC clone: B6Ng01-121G16, 5' end.DH925107|Mus musculus domesticus DNA, BAC clone: B6Ng01-121G16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(169,912,812 - 169,913,864)(55,141,555 - 55,142,631)
sequence
gaattcagtgactgacaaagagaagctccctgagtgcctgaggggtcctt
ctgtccctacctccccagcactggaattacaaatgccacacactcacctt
ttttttttttttaagatttatttatgggtttagaatgcaaaatgtgcctc
aaacaaatacctttccccttatgaccaggaagcatgggttcagggctcaa
gaacaagaagtgggaaatactgttcttactctgacaactaataatctact
gggagtattcctcttcctcttcctgtgaacttcagtcacatgtgttcagg
agctctaggcccagtaaaggaaggtggcacctatagacatatagtataag
atcatcttccacatgagttgtaagctaggccaatccctgctcatgcttga
tcactcagacttctaagccaaccagtaaagagagaatcactttaccaaat
ggattaggactcccaagtgtcagagggatttggttactgccataaaagta
agcagtattaaagacaatatttagaacacagaaagcccactagactgctt
ctcagcatctctgtatggcccaaatgaatatctgtggcaatgacttagcc
acagaacttggattctgccacattcaggtctaactatccttgcaaagtaa
agaattccactaagtggagatgttggtgaaaggtaagtggagctgaaatg
tatggtgatgaagcaggctgctatgaacagtcaagccttgtggtgctcaa
aagcagagaccataacagttgttgttattctgttctgtttgttttttgtt
gtgtgtatgtgcatgcacccaggtgtgtaagtgagcatgcacttgtgatt
aaatgggtttgaagaccagagactgtgtctagtgtctttctcagtaactc
tctatcttgtttaatgagccagagtctctcactgaccatgaaaggtggca
ggctagctaatgaattccaggactcttctgtctctaccaccccaatcctg
ggatacaacacaagtttctggcttaaacaccacatcaccataccacacac
cacacacacacacaccaacttttcaaagactgagagctctccaagcagca
cttaaccaactgaaccacctctctgcctaggattattttcagttcctaaa
gatctcatttc
gaattctgtattatactcacacggtctctaaccatatctggccttttcag
ccttgaactcagagcattgctaagatcagaggttgtgatcacacatttgt
gtggctgaatagggagctatagaactttgaggacacccttggatgtggtg
cacagtcgttttaaattaatgctaaactggtctaaagagctgcataatcc
caacactcaggaggcttaggctggtagttctctaagtttcaggaaagcat
ggcaacaatagaaatcctgtcttgaaaaacaaaacaacaaaaaaacctgc
atcttttttttttttctcgtattttcctcaattacatttccaatgctttc
ccaaaagtcttcctcacgtgctccccccccaccaaaacctgcatctttaa
taactgtttacataactcaagacaatagaagtttgattcaaatccaaaag
ttgccaatacttgttggtgtcatatttgaagttttttattgagcgaacca
gaatatcacattatcttactggctgatatttagtgaatgaattttaaagc
aaaccatgtggtaaaaatagtgcataagcagggctgtagtggtagtggtg
catgcctctaattccagctagcctttaggaggcagaggcaagcagatctt
tgtgttttgtgagtttgaggacaggaaaggctacacagaaatgtcctgtc
tcagaaaacaaaataaacctaggtcatagccaaaactcaagtgcaaatga
tgtgaagagtgttctgggatttggcgattaacatctgtgcttccttgttt
ttatgggtggcatctgttagtaccagggaattcctgttgtgcttcattca
ttgttggactcctggcaatgatcagtgctcattttttataaaacctaaga
tggttgattaacgtgctttgaaatcatgtgcagatggttaaaatgaacaa
attgaggtatcatgaggtgcttttttttccctgtcgctgaaggaaagact
gtgattatggacaaagtggggaagtccaagtaacaaaaagatgggtccct
gttgccaagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_169912812_169913864
seq2: B6Ng01-121G16.b_171_1203 (reverse)

seq1  GAAATGAGAAAACTGTTTTAAGGAACATGAAAATTAAATCCTGAGGCTAG  50
      |||||||||      | || |||||| |||||||  |||||| |||| ||
seq2  GAAATGAGA------TCTTTAGGAAC-TGAAAAT--AATCCT-AGGC-AG  39

seq1  AGAGGTGGCTCAGTTGGTTAAGTGCTTGCCTTGGGAGAGCTCTCAGTCTC  100
      |||||||| |||||||||||||||| |||  | |||||||||||||||| 
seq2  AGAGGTGGTTCAGTTGGTTAAGTGC-TGC--TTGGAGAGCTCTCAGTCTT  86

seq1  TAGAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG-TGTGTG  149
      |  |||||  ||||||||||||||| ||||||| || || ||| |||| |
seq2  TGAAAAGTTGGTGTGTGTGTGTGTG-GTGTGTG-GTATG-GTGATGTG-G  132

seq1  TGTTTAAGCCAGAAACTTGTGTTTGTAATCCCAGAATTGGGGTGGTAGAG  199
      ||||||||||||||||||||| |||| ||||||| |||||||||||||||
seq2  TGTTTAAGCCAGAAACTTGTG-TTGT-ATCCCAGGATTGGGGTGGTAGAG  180

seq1  ACAAGAAGAGTCCTGGAATTCATTAGCTAGCCTGCAACC-TTCATGGTCA  248
      || |||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  AC-AGAAGAGTCCTGGAATTCATTAGCTAGCCTGCCACCTTTCATGGTCA  229

seq1  GTGAGAGACTCTGGCTCATAAAACAAGATAGAGAGTTACTGAGAAAGACA  298
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGAGAGACTCTGGCTCATTAAACAAGATAGAGAGTTACTGAGAAAGACA  279

seq1  CTAGACACAGTCTCTGGTCTTCATACCCATTTAATCACAAGTGCATGCTC  348
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTAGACACAGTCTCTGGTCTTCAAACCCATTTAATCACAAGTGCATGCTC  329

seq1  ACTTACACACCTGGGTGCATGCACATACACACAACAAAAAACAAAACAGA  398
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTTACACACCTGGGTGCATGCACATACACACAACAAAAAAC-AAACAGA  378

seq1  ACAGAATAACAACAACTGTTATGGTCTCTGCTTTTGAGCACCACAAGGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATAACAACAACTGTTATGGTCTCTGCTTTTGAGCACCACAAGGCT  428

seq1  TGACTGTTCATAGCAGCCTGCTTCATCACCATACATTTCAGCTCCACTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTCATAGCAGCCTGCTTCATCACCATACATTTCAGCTCCACTTA  478

seq1  CCTTTCACCAACATCTCCACTTAGTGGAATTCTTTACTTTGCAAGGATAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACCAACATCTCCACTTAGTGGAATTCTTTACTTTGCAAGGATAG  528

seq1  TTAGACCTGAATGTGGCAGAATCCAAGTTCTGTGGCTAAGTCATTGCCAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCTGAATGTGGCAGAATCCAAGTTCTGTGGCTAAGTCATTGCCAC  578

seq1  AGATATTCATTTGGGCCATACAGAGATGCTGAGAAGCAGTCTAGTGGGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTCATTTGGGCCATACAGAGATGCTGAGAAGCAGTCTAGTGGGCT  628

seq1  TTCTGTGTTCTAAATATTGTCTTTAATACTGCTTACTTTTATGGCAGTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTTCTAAATATTGTCTTTAATACTGCTTACTTTTATGGCAGTAA  678

seq1  CCAAATCCCTCTGACACTTGGGAGTCCTAATCCATTTGGTAAAGTGATTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCCCTCTGACACTTGGGAGTCCTAATCCATTTGGTAAAGTGATTC  728

seq1  TCTCTTTACTGGTTGGCTTAGAAGTCTGAGTGATCAAGCATGAGCAGGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTACTGGTTGGCTTAGAAGTCTGAGTGATCAAGCATGAGCAGGGA  778

seq1  TTGGCCTAGCTTACAACTCATGTGGAAGATGATCTTATACTATATGTCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTAGCTTACAACTCATGTGGAAGATGATCTTATACTATATGTCTA  828

seq1  TAGGTGCCACCTTCCTTTACTGGGCCTAGAGCTCCTGAACACATGTGACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGCCACCTTCCTTTACTGGGCCTAGAGCTCCTGAACACATGTGACT  878

seq1  GAAGTTCACAGGAAGAGGAAGAGGAATACTCCCAGTAGATTATTAGTTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCACAGGAAGAGGAAGAGGAATACTCCCAGTAGATTATTAGTTGT  928

seq1  CAGAGTAAGAACAGTATTTCCCACTTCTTGTTCTTGAGCCCTGAACCCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAAGAACAGTATTTCCCACTTCTTGTTCTTGAGCCCTGAACCCAT  978

seq1  GCTTCCTGGTCATAAGGGGAAAGGTATTTGTTTGAGGCACATTTTGCATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGGTCATAAGGGGAAAGGTATTTGTTTGAGGCACATTTTGCATT  1028

seq1  CTAAA  1053
      |||||
seq2  CTAAA  1033

seq1: chr1_55141555_55142631
seq2: B6Ng01-121G16.g_65_1126 (reverse)

seq1  TGACTTTGCAACAGTGACCCCATC-TTTTGTTACTTTGGGACTTCCCCAA  49
      |||||| ||||||| || |||||| |||||||||||  |||||||||| |
seq2  TGACTTGGCAACAGGGA-CCCATCTTTTTGTTACTT--GGACTTCCCC-A  46

seq1  CTCTGTTCAATAATCACAGTTCTTCCCTACAGCGACAGGGAAAAAAAAAG  99
      || || || |||||||||| |||| ||| ||||||||||| |||||||||
seq2  CTTTG-TCCATAATCACAG-TCTTTCCTTCAGCGACAGGG-AAAAAAAAG  93

seq1  CAACCCTCAATGATAACCCTCAAATTTGTCATTTTTAACCATCCTGCAAC  149
      ||  |||| ||||||  |||| |||||||   |||||||||| |||| ||
seq2  CA--CCTC-ATGATA--CCTC-AATTTGTTCATTTTAACCAT-CTGC-AC  135

seq1  ATGAATCTCAAAGCCACGTTAATCAACCATCTTAGG-TCTATAAAAAATG  198
      ||| || |||||| |||||||||||||||||||||| | |||||||||||
seq2  ATG-ATTTCAAAG-CACGTTAATCAACCATCTTAGGTTTTATAAAAAATG  183

seq1  AGCACTGATCATTTGCCAGGAGTCCAACATTGAATGAAGCACAACAGGAA  248
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  AGCACTGATCA-TTGCCAGGAGTCCAACAATGAATGAAGCACAACAGGAA  232

seq1  TTCCCTGGTACTAACAGATGCCACCCAT-AAAACAAGAAAGCACAGATGT  297
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  TTCCCTGGTACTAACAGATGCCACCCATAAAAACAAGGAAGCACAGATGT  282

seq1  TAATCGCCAAATCCCAGAACACTCTTCACATCATTTGCACTTGAGTTTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGCCAAATCCCAGAACACTCTTCACATCATTTGCACTTGAGTTTTG  332

seq1  GCTATGACCTAGGTTTATTTTGTTTTCTGAGACAGGACATTTCTGTGTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGACCTAGGTTTATTTTGTTTTCTGAGACAGGACATTTCTGTGTAG  382

seq1  CCTTTCCTGTCCTCAAACTCACAAAACACAAAGATCTGCTTGCCTCTGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTGTCCTCAAACTCACAAAACACAAAGATCTGCTTGCCTCTGCC  432

seq1  TCCTAAAGGCTAGCTGGAATTAGAGGCATGCACCACTACCACTACAGCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAGGCTAGCTGGAATTAGAGGCATGCACCACTACCACTACAGCCC  482

seq1  TGCTTATGAACTATTTTTAAAACATGTTTTGCTTTAAAATTCATTCACTA  547
      |||||||| ||||||||||  ||||| |||||||||||||||||||||||
seq2  TGCTTATGCACTATTTTTACCACATGGTTTGCTTTAAAATTCATTCACTA  532

seq1  AATATCAGCCAGTAAGATAATGTGCTTTTCTGGTTCGCTCAATAAAAAAC  597
      |||||||||||||||||||||||| | |||||||||||||||||||||||
seq2  AATATCAGCCAGTAAGATAATGTGATATTCTGGTTCGCTCAATAAAAAAC  582

seq1  TTCAAATATGACACCAACAAGTATTGGCAACTTTTGGATTTGAACCAAAC  647
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCAAATATGACACCAACAAGTATTGGCAACTTTTGGATTTGAATCAAAC  632

seq1  TTCTATTGTCTTGAGCTATGTAAACAGTTCTTAAAGATGCAGGTTTTGGG  697
      ||||||||||||||| ||||||||||||| ||||||||||||||||||| 
seq2  TTCTATTGTCTTGAGTTATGTAAACAGTTATTAAAGATGCAGGTTTTGGT  682

seq1  GGGGGGGGTGCATGTGTGGAAGACTTTTGGGATAGCATTGGAAATGTAAT  747
      |||||||| ||| ||| ||||||||||||||| |||||||||||||||||
seq2  GGGGGGGGAGCACGTGAGGAAGACTTTTGGGAAAGCATTGGAAATGTAAT  732

seq1  TGAGGAAAATACGAGAAAAAAAAAAAAGATGCAGGTTTTTTTGTTGTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAAATACGAGAAAAAAAAAAAAGATGCAGGTTTTTTTGTTGTTTT  782

seq1  GTTTTTCAAGACAGGATTTCTATTGTTGCCATGCTTTCCTGAAACTTAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAAGACAGGATTTCTATTGTTGCCATGCTTTCCTGAAACTTAGA  832

seq1  GAACTACCAGCCTAAGCCTCCTGAGTGTTGGGATTATGCAGCTCTTTAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACCAGCCTAAGCCTCCTGAGTGTTGGGATTATGCAGCTCTTTAGA  882

seq1  CCAGTTTAGCATTAATTTAAAATGACTGTGCACCACATCCAATGGTGTCC  947
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  CCAGTTTAGCATTAATTTAAAACGACTGTGCACCACATCCAAGGGTGTCC  932

seq1  TCAAAGTACTATAGCTCCCTATTCAGCCACACAAATGTGTGATCACAACC  997
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTTCTATAGCTCCCTATTCAGCCACACAAATGTGTGATCACAACC  982

seq1  TCTGATCTTAGCACTGCTCTGAGTTCAAGGCTGACTTGGCCAGCTATGGT  1047
      ||||||||||||| ||||||||||||||||||||   |||||| ||||||
seq2  TCTGATCTTAGCAATGCTCTGAGTTCAAGGCTGAAAAGGCCAGATATGGT  1032

seq1  TAGAGACCCTGTGAGTATAATACTGAATTC  1077
      |||||||| |||||||||||||| ||||||
seq2  TAGAGACCGTGTGAGTATAATACAGAATTC  1062