BAC Information

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BAC

Clone NameB6Ng01-121J11
Chromosome1 (Build37)
Map Location 93,128,124 - 93,293,905
singlet/doubletdoublet
Overlap geneUbe2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap
Upstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1
Downstream gene1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4, LOC100040419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121J11.bB6Ng01-121J11.g
ACCDH925236DH925237
length1,1531,029
definitionDH925236|Mus musculus domesticus DNA, BAC clone: B6Ng01-121J11, 5' end.DH925237|Mus musculus domesticus DNA, BAC clone: B6Ng01-121J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,292,730 - 93,293,905)(93,128,124 - 93,129,359)
sequence
gaattctcctcacaggactccattctcagaccatgttccgacaccatact
ttgctttagtaaatggtgttggttgttatgtagtcataagaataagacta
aattgcatactgaccctgctcatgcatgggtaagtataacaaattttcca
aaatagtactgggagcaattaagaaataagtctagtcattttcacatact
ataggaagatgtgtggacaatggaaactgctgtgtcttcagatcaagctt
tgcactgcctttgaccttcaggaaccgctggcaaatgtgtgtaataagtg
atgcctcctgcagatactatgtggaataaagagaacctgtgcgtttggta
gaatgcatggcccaggttcgattctatggtcagggatttgtagatgatgg
ctggtgacatccctaggatctgcactgtaaccacaacataaagggacagt
tgtactgattctgtagaaagtatgaggtgtgtggcatatggcgccaccac
tcagcacagcagccatgttttgtttcattcttttggttgtgtgttttttt
tgtttttgtttttttttaagtatcacatcttatcttcatacccacaagac
aaatttttataacctggaataagtatgtagaaagtatgtgttttatgtct
acagatattgtactgaattccagcttcactccaggacttaagagattttg
atagttgagtatatcaatttaaaataacaatcaatcttttgcagaaagga
attatacctattttctatcagtagtggaacttatagatacataaaatgct
ggcatagattgtttggttacatagagtggttcacttgtttgcttgttaga
acatttgttcaaagctgctggtcaggctagagcgagagcacatggtagac
acctgcctagcatgtgtaaggccctgggttcagagctggtaccagacaaa
gcacctgatggtcagcctggcgctattactcagcgcaagagcacatacta
gcatgaaaatctgagtctagtcctagcacctcaataaactgatgttatgt
cagggctattgctcccagagtacttaaacgtattgaattagggagccggg
gtgagaaccatgtctataattcaggcattaagatgcggactaggcttagc
ctt
gaattcctagccttaattttcagcactcagataacgtttagcattcattt
tgatatatcaaggggagcagtggtggtatattcctttaatcccagcactt
cggagacagaagcaggtggatctccgagtttgaggccagcctggtctagt
gagtgagttccaggacagccagggctacacagagaaaccctgtcttggaa
aaaaaattaaaaatatatatcttttttttttcaaaggtgaccacagagtt
tttagaagttccagaagcaagggttttatcctttttgtttatattctgct
atgatgggtatatatcattttttccagaagtgagcacagagcttttagaa
gccccagaggaagggttttaccctttttgtttatataatgctccgatgag
tacttccttatttgtgtccttaaaatgaatgtttagaaatagactggtgg
gtcaaggggatccttgccctctgagtaaacactgccaggtcccttaaaag
tgcttgcatcacccacacgtcaccaatgtcaactagaactcctacttaac
ttaagcttttgcctaaaagggacaatggtttcttttctctagcaaacgag
acaattaggtgagggaagacattctcagctgctgttctcatgcatgtctg
gtggctgagtggtcgatctgtctcctgtggctactgaccataggaagtct
cagtgaattactacatagattcttagcacaagcccgtcttctctttagga
gagggctctactcaccagctgaccgtgttcatgtatactcaaaattcagc
tttctttatattttgttgttgttgttgttgttgtttttagaaggatttat
ttatttcattatatggggagtacagtcactgtcttcagacatcccagaaa
agagcattagatcccattacagatggttgagagcaacatgtgggtgctgg
gaatggacttaggactttggagagcagctaaatgctagccatctctccag
gctgggtagtcgttaagaattgctttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93292730_93293905
seq2: B6Ng01-121J11.b_47_1199 (reverse)

seq1  AAGGCTAAAAGCCTATGTCCGCATACTTTAATTGCTGAGATTATAGACAT  50
      ||||||  ||||||| ||||||||   |||||  |||| |||||||||||
seq2  AAGGCT--AAGCCTA-GTCCGCAT--CTTAATGCCTGA-ATTATAGACAT  44

seq1  GTGTCTTCACCCCGGCTCCTAAATTTCATACGTTTAAGTTACTCTGGTGA  100
      | ||  |||||||||||||  ||||  ||||||||||| |||||||| ||
seq2  G-GTTCTCACCCCGGCTCCCTAATTCAATACGTTTAAG-TACTCTGG-GA  91

seq1  GCAAATAGCCCTTGACAATTAAACATCAGTTTTATTTGAGGTGCTAAGGA  150
      || |||||||| |||||    |||||||||||   |||||||||| ||||
seq2  GC-AATAGCCC-TGACA---TAACATCAGTTT--ATTGAGGTGCT-AGGA  133

seq1  CTAGACTCAAGATTTTTCATGCTAAGTATGTGCTCTTGCGCTGAGTAATA  200
      |||||||| ||| |||||||||| ||||||||||||||||||||||||||
seq2  CTAGACTC-AGA-TTTTCATGCT-AGTATGTGCTCTTGCGCTGAGTAATA  180

seq1  GCGCCAGGCTGACCATCAGGTGCTTTGTCTTGGTACCAGCTCTGGACCCA  250
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  GCGCCAGGCTGACCATCAGGTGCTTTGTC-TGGTACCAGCTCTGAACCCA  229

seq1  GGGCCTTACACATGCTAGGCAGGTGTTCTACCATGTGCTCTCGCTCTAGC  300
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGGCCTTACACATGCTAGGCAGGTG-TCTACCATGTGCTCTCGCTCTAGC  278

seq1  CTGACCAGCAGCTTTGAACAAAATGTTCTAACAAGCAAACAAGTGAACCA  350
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGACCAGCAGCTTTGAAC-AAATGTTCTAACAAGCAAACAAGTGAACCA  327

seq1  CTCTATGTAACCAAACAATCTATGCCAGCATTTTATGTATCTATAAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGTAACCAAACAATCTATGCCAGCATTTTATGTATCTATAAGTTC  377

seq1  CACTACTGATAGAAAATAGGTATAATTCCTTTCTGCAAAAGATTGATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTGATAGAAAATAGGTATAATTCCTTTCTGCAAAAGATTGATTGT  427

seq1  TATTTTAAATTGATATACTCAACTATCAAAATCTCTTAAGTCCTGGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAATTGATATACTCAACTATCAAAATCTCTTAAGTCCTGGAGTG  477

seq1  AAGCTGGAATTCAGTACAATATCTGTAGACATAAAACACATACTTTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAATTCAGTACAATATCTGTAGACATAAAACACATACTTTCTAC  527

seq1  ATACTTATTCCAGGTTATAAAAATTTGTCTTGTGGGTATGAAGATAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATTCCAGGTTATAAAAATTTGTCTTGTGGGTATGAAGATAAGAT  577

seq1  GTGATACTTAAAAAAAAACAAAAACAAAAAAAACACACAACCAAAAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACTTAAAAAAAAACAAAAACAAAAAAAACACACAACCAAAAGAAT  627

seq1  GAAACAAAACATGGCTGCTGTGCTGAGTGGTGGCGCCATATGCCACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAAACATGGCTGCTGTGCTGAGTGGTGGCGCCATATGCCACACAC  677

seq1  CTCATACTTTCTACAGAATCAGTACAACTGTCCCTTTATGTTGTGGTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACTTTCTACAGAATCAGTACAACTGTCCCTTTATGTTGTGGTTAC  727

seq1  AGTGCAGATCCTAGGGATGTCACCAGCCATCATCTACAAATCCCTGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGATCCTAGGGATGTCACCAGCCATCATCTACAAATCCCTGACCA  777

seq1  TAGAATCGAACCTGGGCCATGCATTCTACCAAACGCACAGGTTCTCTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCGAACCTGGGCCATGCATTCTACCAAACGCACAGGTTCTCTTTA  827

seq1  TTCCACATAGTATCTGCAGGAGGCATCACTTATTACACACATTTGCCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATAGTATCTGCAGGAGGCATCACTTATTACACACATTTGCCAGC  877

seq1  GGTTCCTGAAGGTCAAAGGCAGTGCAAAGCTTGATCTGAAGACACAGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGAAGGTCAAAGGCAGTGCAAAGCTTGATCTGAAGACACAGCAG  927

seq1  TTTCCATTGTCCACACATCTTCCTATAGTATGTGAAAATGACTAGACTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTGTCCACACATCTTCCTATAGTATGTGAAAATGACTAGACTTA  977

seq1  TTTCTTAATTGCTCCCAGTACTATTTTGGAAAATTTGTTATACTTACCCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAATTGCTCCCAGTACTATTTTGGAAAATTTGTTATACTTACCCA  1027

seq1  TGCATGAGCAGGGTCAGTATGCAATTTAGTCTTATTCTTATGACTACATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAGCAGGGTCAGTATGCAATTTAGTCTTATTCTTATGACTACATA  1077

seq1  ACAACCAACACCATTTACTAAAGCAAAGTATGGTGTCGGAACATGGTCTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAACACCATTTACTAAAGCAAAGTATGGTGTCGGAACATGGTCTG  1127

seq1  AGAATGGAGTCCTGTGAGGAGAATTC  1176
      ||||||||||||||||||||||||||
seq2  AGAATGGAGTCCTGTGAGGAGAATTC  1153

seq1: chr1_93128124_93129359
seq2: B6Ng01-121J11.g_68_1096

seq1  GAATTCCTAGCCTTAATTTTCAGCACTCAGATAACGTTTAGCATTCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGCCTTAATTTTCAGCACTCAGATAACGTTTAGCATTCATTT  50

seq1  TGATATATCAAGGGGAGCAGTGGTGGTATATTCCTTTAATCCCAGCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATATCAAGGGGAGCAGTGGTGGTATATTCCTTTAATCCCAGCACTT  100

seq1  CGGAGACAGAAGCAGGTGGATCTCCGAGTTTGAGGCCAGCCTGGTCTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGACAGAAGCAGGTGGATCTCCGAGTTTGAGGCCAGCCTGGTCTAGT  150

seq1  GAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGGAA  200

seq1  AAAAAATTAAAAATATATATCTTTTTTTTTTCAAAGGTGACCACAGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAAAAATATATATCTTTTTTTTTTCAAAGGTGACCACAGAGTT  250

seq1  TTTAGAAGTTCCAGAAGCAAGGGTTTTATCCTTTTTGTTTATATTCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGTTCCAGAAGCAAGGGTTTTATCCTTTTTGTTTATATTCTGCT  300

seq1  ATGATGGGTATATATCATTTTTTCCAGAAGTGAGCACAGAGCTTTTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGTATATATCATTTTTTCCAGAAGTGAGCACAGAGCTTTTAGAA  350

seq1  GCCCCAGAGGAAGGGTTTTACCCTTTTTGTTTATATAATGCTCCGATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGAGGAAGGGTTTTACCCTTTTTGTTTATATAATGCTCCGATGAG  400

seq1  TACTTCCTTATTTGTGTCCTTAAAATGAATGTTTAGAAATAGACTGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCTTATTTGTGTCCTTAAAATGAATGTTTAGAAATAGACTGGTGG  450

seq1  GTCAAGGGGATCCTTGCCCTCTGAGTAAACACTGCCAGGTCCCTTAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGGGATCCTTGCCCTCTGAGTAAACACTGCCAGGTCCCTTAAAAG  500

seq1  TGCTTGCATCACCCACACGTCACCAATGTCAACTAGAACTCCTACTTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCATCACCCACACGTCACCAATGTCAACTAGAACTCCTACTTAAC  550

seq1  TTAAGCTTTTGCCTAAAAGGGACAATGGTTTCTTTTCTCTAGCAAACGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTTTTGCCTAAAAGGGACAATGGTTTCTTTTCTCTAGCAAACGAG  600

seq1  ACAATTAGGTGAGGGAAGACATTCTCAGCTGCTGTTCTCATGCATGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAGGTGAGGGAAGACATTCTCAGCTGCTGTTCTCATGCATGTCTG  650

seq1  GTGGCTGAGTGGTCGATCTGTCTCCTGTGGCTACTGACCATAGGAAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGAGTGGTCGATCTGTCTCCTGTGGCTACTGACCATAGGAAGTCT  700

seq1  CAGTGAATTACTACATAGATTCTTAGCACAAGCCCGTCTTCTCTTTAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATTACTACATAGATTCTTAGCACAAGCCCGTCTTCTCTTTAGGA  750

seq1  GAGGGCTCTACTCACCAGCTGACCGTGTTCATGTTATACTCAAAATTCAG  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAGGGCTCTACTCACCAGCTGACCGTGTTCATG-TATACTCAAAATTCAG  799

seq1  CTTTCTTTATATTTTGTTGTTGTTGTTGTTGTTGTTTTTAAGAAGGATTT  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTTCTTTATATTTTGTTGTTGTTGTTGTTGTTGTTTTT-AGAAGGATTT  848

seq1  ATTTATTTCATTATAT-GTGAGTACAGTCACTGTCTTCAGACATCCCAGA  899
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  ATTTATTTCATTATATGGGGAGTACAGTCACTGTCTTCAGACATCCCAGA  898

seq1  AAAGAGCATTAGATCCCATTACAGATGGTTGAGAGCCACCATGTGGTTGC  949
      ||||||||||||||||||||||||||||||||||| || ||||||| |||
seq2  AAAGAGCATTAGATCCCATTACAGATGGTTGAGAG-CAACATGTGGGTGC  947

seq1  TGGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCTTAATTGCTAAGCCA  999
      |||||| || ||| |||| || ||| ||||||||  ||| |||| |||||
seq2  TGGGAA-TGGACTTAGGA-CTTTGG-AGAGCAGC--TAAATGCT-AGCCA  991

seq1  TCTCTCCAGCCTGGGTAGTTCGTTTAAAGAATTTTGCTTTTCTTGGAATT  1049
      ||||||||| |||||||| |||||  |||||  |||| ||||||      
seq2  TCTCTCCAGGCTGGGTAG-TCGTT--AAGAA--TTGC-TTTCTT------  1029

seq1  TCATGAGCTATCCTGTTATGTAATTTTGGTAAGGGTTTACTCAGCTTACA  1099
                                                        
seq2  --------------------------------------------------  1029

seq1  CTTCCATGTTGCTGTTCATCACCAAAGGAAGTCAGGAATGGAACTCAAGC  1149
                                                        
seq2  --------------------------------------------------  1029

seq1  TGGTTAGGAAGCAGGAGCTGATACAGAGGCCAAGGTGAGATGTTACTTAC  1199
                                                        
seq2  --------------------------------------------------  1029

seq1  TGGCTTGCTTCCTCTGGCTTGCTCAGCTTGCTTTCTT  1236
                                           
seq2  -------------------------------------  1029