BAC Information

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BAC

Clone NameB6Ng01-122P06
Chromosome1 (Build37)
Map Location 63,575,898 - 63,776,565
singlet/doubletdoublet
Overlap geneAdam23, Gm215, Mdh1b
Upstream genePard3b, LOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638
Downstream geneFastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122P06.bB6Ng01-122P06.g
ACCDH926250DH926251
length1,1021,145
definitionDH926250|Mus musculus domesticus DNA, BAC clone: B6Ng01-122P06, 5' end.DH926251|Mus musculus domesticus DNA, BAC clone: B6Ng01-122P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,775,487 - 63,776,565)(63,575,898 - 63,577,050)
sequence
gaattcctctgatctgctgtgactaatgtaatgatggacaactgcacagg
cctcggcggggttggcgggaaaaggagcataaggaatggatggagagaag
gaaataactaagctattaaagaaaccaacctccagataaaggcaaagagc
tagaagatctgtagtctaatggaggacctggatgtgggaatgtcgcaggg
cctgggttagaattacaaaatataaactagatatttagtttaaacaacaa
caacaacaaaagtttgtactaaatcttgaacaaaatttaacgaatttagg
taaaaataatgtcaaagtgtcaattcgtctacatttttaatgtagaccat
cttgacagctggaagcaacaccactacttactggaacaggctgttgactg
tatctgcttcctcttctttcaccaagtatcttttttttcctttttattat
tattttttattaggtatttatttcatttacatttctaatgctatcccaaa
agtcccccacccacccactcccacttctttcaccaagtatcttaaaagag
ctccctactgttctatccttccttccactcagtctggcttctcctttggc
cttcctatacaaactattttggccacaatcacttctttattacacaattg
gaatttaccatccctttggaagtacatcttttgcttcactatacattcag
ataaatattttttttttttagcactagaaaacgggatggtgggaatacat
acagtaaaaactttcaggacactttgtatataacagtaacaggtcagtgt
tctggaggaaacagtggttgtgatggtttgtatattcttgagccagggag
tggcaccatctggagttgtgacctgattggagtaggtgtgccactgtggg
gtatgggcttaagatcttcaccctagttgcctaggagtcagtcttccact
agcagcctttggatgaaatgtagaactctcagctatgcctgtaccatgtc
tgcttggaaactgccatgttcccacttgatgatatggactggacctttga
cctgtagccagcctcaatttagtgttggttttataagaacttgcccttgc
tc
gaattcccacaatgcctacaagggcgtttcccatgagctaaagacttctt
acaaggctcatggtgattacctcatgatgatgccactgcctgccaggagc
accactctgaggtgaaatcagatccttagtagcagatctgttgaggcatt
taagacccaaagtctagtcggaagcttacagaatgactcagtctagttga
ctcagcactataggactatggcagaggtcatcagttggattagatcttgg
aatggatgggacattaagaggaattcatccattgtctgagtttcaggcat
actcattgaaaccatgcataaacacattttagacccaaatcaagtggtgt
ataggatggagacttagctttagacattggatgaaaagggccttaaaact
cctttcaaatgttattttaaaagactgtcatgtctcctcaagttaatttt
ttttatgacacactacttaatagaaatttacaatttacaagtataaagat
actcctgctagcctcttcagaatcagagacggtcttagaatattcttaga
caatagggcagtcaaatttgttctatccgatatataatttgtataacaag
aaatttgtgctagtttcatgtagttctgaaaaaagcgatttttcccccta
ccatgtgagagatcttattcccgatcactgttgtcataagtttatttcta
gaaatgagttctatcgtgtagcatttgcatgctctgggggaacgctttac
acgtttgtgctggcaagctgcctagtcgagtccttggagttctgagagcg
gggcagggttcatctgggactgtttgaagacttttgacactgttgagatt
ctgacttgcctgttctcactgcagcacttgctgactctcctcctgctgtc
ttgtcttacagtggcatgtttgaggatgacacctttgtgtatatgataga
gccgctggaactgactgatgatgagtgggcctgggccatcaatttcctat
ggtattggttttcccagcatcaaagactgtttatcgtgttctgtgatgcc
caactagaatggtacaggctagcccttattgcggctaggccgatcagagg
tgtgtaggcttagctattctgaagcaagccccctcccagatcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_63775487_63776565
seq2: B6Ng01-122P06.b_69_1146 (reverse)

seq1  GAGCAA-GGCAAG-TCTTATAAAAACAACACTTAATTGGGGCTGGCTTAC  48
      |||||| |||||| |||||||||| ||||||| ||||| ||||||| |||
seq2  GAGCAAGGGCAAGTTCTTATAAAACCAACACTAAATTGAGGCTGGC-TAC  49

seq1  AGGTTCAAAGGTTCAGTCCATTATCATCAAGGTGGGAACATGGCAGTATC  98
      ||| |||||||| ||||||| ||||||||| |||||||||||||||| ||
seq2  AGG-TCAAAGGTCCAGTCCA-TATCATCAA-GTGGGAACATGGCAGTTTC  96

seq1  CAAGCAGACATGGTACAGGCATAGCTGAGAGTTCTACATCTTCATCCAAA  148
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAAGCAGACATGGTACAGGCATAGCTGAGAGTTCTACAT-TTCATCCAAA  145

seq1  GGCTGCTAGTGGAAGACTGACTCCTAGGCAACTAGGGTGAGGATCTTAAG  198
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGCTGCTAGTGGAAGACTGACTCCTAGGCAACTAGGGTGAAGATCTTAAG  195

seq1  CCCATA-CCCACAGTGGCACACCTACTCCAATCAGGTCACACCTCCAGAT  247
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCATACCCCACAGTGGCACACCTACTCCAATCAGGTCACAACTCCAGAT  245

seq1  GGTGCCACTCCCTGGCTCAAGAATATACAAACCATCACAACCACTGTTTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCACTCCCTGGCTCAAGAATATACAAACCATCACAACCACTGTTTC  295

seq1  CTCCAGAACACTGACCTGTTACTGTTATATACAAAGTGTCCTGAAAGTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAACACTGACCTGTTACTGTTATATACAAAGTGTCCTGAAAGTTT  345

seq1  TTACTGTATGTATTCCCACCATCCCGTTTTCTAGTGCT-AAAAAAAAAAA  396
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTACTGTATGTATTCCCACCATCCCGTTTTCTAGTGCTAAAAAAAAAAAA  395

seq1  TATTTATCTGAATGTATAGTGAAGCAAAAGATGTACTTCCAAAGGGATGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCTGAATGTATAGTGAAGCAAAAGATGTACTTCCAAAGGGATGG  445

seq1  TAAATTCCAATTGTGTAATAAAGAAGTGATTGTGGCCAAAATAGTTTGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCAATTGTGTAATAAAGAAGTGATTGTGGCCAAAATAGTTTGTA  495

seq1  TAGGAAGGCCAAAGGAGAAGCCAGACTGAGTGGAAGGAAGGATAGAACAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGCCAAAGGAGAAGCCAGACTGAGTGGAAGGAAGGATAGAACAG  545

seq1  TAGGGAGCTCTTTTAAGATACTTGGTGAAAGAAGTGGGAGTGGGTGGGTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGCTCTTTTAAGATACTTGGTGAAAGAAGTGGGAGTGGGTGGGTG  595

seq1  GGGGACTTTTGGGATAGCATTAGAAATGTAAATGAAATAAATACCTAATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTTTTGGGATAGCATTAGAAATGTAAATGAAATAAATACCTAATA  645

seq1  AAAAATAATAATAAAAAGGAAAAAAAAGATACTTGGTGAAAGAAGAGGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATAATAAAAAGGAAAAAAAAGATACTTGGTGAAAGAAGAGGAA  695

seq1  GCAGATACAGTCAACAGCCTGTTCCAGTAAGTAGTGGTGTTGCTTCCAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATACAGTCAACAGCCTGTTCCAGTAAGTAGTGGTGTTGCTTCCAGC  745

seq1  TGTCAAGATGGTCTACATTAAAAATGTAGACGAATTGACACTTTGACATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGATGGTCTACATTAAAAATGTAGACGAATTGACACTTTGACATT  795

seq1  ATTTTTACCTAAATTCGTTAAATTTTGTTCAAGATTTAGTACAAACTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACCTAAATTCGTTAAATTTTGTTCAAGATTTAGTACAAACTTTT  845

seq1  GTTGTTGTTGTTGTTTAAACTAAATATCTAGTTTATATTTTGTAATTCTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTGTTTAAACTAAATATCTAGTTTATATTTTGTAATTCTA  895

seq1  ACCCAGGCCCTGCGACATTCCCACATCCAGGTCCTCCATTAGACTACAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGCCCTGCGACATTCCCACATCCAGGTCCTCCATTAGACTACAGA  945

seq1  TCTTCTAGCTCTTTGCCTTTATCTGGAGGTTGGTTTCTTTAATAGCTTAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGCTCTTTGCCTTTATCTGGAGGTTGGTTTCTTTAATAGCTTAG  995

seq1  TTATTTCCTTCTCTCCATCCATTCCTTATGCTCCTTTTCCCGCCAACCCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCTTCTCTCCATCCATTCCTTATGCTCCTTTTCCCGCCAACCCC  1045

seq1  GCCGAGGCCTGTGCAGTTGTCCATCATTACATT  1079
      |||||||||||||||||||||||||||||||||
seq2  GCCGAGGCCTGTGCAGTTGTCCATCATTACATT  1078

seq1: chr1_63575898_63577050
seq2: B6Ng01-122P06.g_68_1212

seq1  GAATTCCCACAATGCCTACAAGGGCGTTTCCCATGAGCTAAAGACTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACAATGCCTACAAGGGCGTTTCCCATGAGCTAAAGACTTCTT  50

seq1  ACAAGGCTCATGGTGATTACCTCATGATGATGCCACTGCCTGCCAGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCTCATGGTGATTACCTCATGATGATGCCACTGCCTGCCAGGAGC  100

seq1  ACCACTCTGAGGTGAAATCAGATCCTTAGTAGCAGATCTGTTGAGGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCTGAGGTGAAATCAGATCCTTAGTAGCAGATCTGTTGAGGCATT  150

seq1  TAAGACCCAAAGTCTAGTCGGAAGCTTACAGAATGACTCAGTCTAGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCCAAAGTCTAGTCGGAAGCTTACAGAATGACTCAGTCTAGTTGA  200

seq1  CTCAGCACTATAGGACTATGGCAGAGGTCATCAGTTGGATTAGATCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCACTATAGGACTATGGCAGAGGTCATCAGTTGGATTAGATCTTGG  250

seq1  AATGGATGGGACATTAAGAGGAATTCATCCATTGTCTGAGTTTCAGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATGGGACATTAAGAGGAATTCATCCATTGTCTGAGTTTCAGGCAT  300

seq1  ACTCATTGAAACCATGCATAAACACATTTTAGACCCAAATCAAGTGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTGAAACCATGCATAAACACATTTTAGACCCAAATCAAGTGGTGT  350

seq1  ATAGGATGGAGACTTAGCTTTAGACATTGGATGAAAAGGGCCTTAAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATGGAGACTTAGCTTTAGACATTGGATGAAAAGGGCCTTAAAACT  400

seq1  CCTTTCAAATGTTATTTTAAAAGACTGTCATGTCTCCTCAAGTTAATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAAATGTTATTTTAAAAGACTGTCATGTCTCCTCAAGTTAATTTT  450

seq1  TTTTATGACACACTACTTAATAGAAATTTACAATTTACAAGTATAAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGACACACTACTTAATAGAAATTTACAATTTACAAGTATAAAGAT  500

seq1  ACTCCTGCTAGCCTCTTCAGAATCAGAGACGGTCTTAGAATATTCTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGCTAGCCTCTTCAGAATCAGAGACGGTCTTAGAATATTCTTAGA  550

seq1  CAATAGGGCAGTCAAATTTGTTCTATCCGATATATAATTTGTATAACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGGCAGTCAAATTTGTTCTATCCGATATATAATTTGTATAACAAG  600

seq1  AAATTTGTGCTAGTTTCATGTAGTTCTGAAAAAAGCGATTTTTCCCCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTGCTAGTTTCATGTAGTTCTGAAAAAAGCGATTTTTCCCCCTA  650

seq1  CCATGTGAGAGATCTTATTCCCGATCACTGTTGTCATAAGTTTATTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGAGAGATCTTATTCCCGATCACTGTTGTCATAAGTTTATTTCTA  700

seq1  GAAATGAGTTCTATCGTGTAGCATTTGCATGCTCTGGGGGAACGCTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGTTCTATCGTGTAGCATTTGCATGCTCTGGGGGAACGCTTTAC  750

seq1  ACGTTTGTGCTGGCAAGCTGCCTAGTCGAGTCCTTGGAGTTCTGAGAGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTGTGCTGGCAAGCTGCCTAGTCGAGTCCTTGGAGTTCTGAGAGCG  800

seq1  GGGCAGGGTTCATCTGGGACTGTTTGAAGACTTTTGACACTGTTGAGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGTTCATCTGGGACTGTTTGAAGACTTTTGACACTGTTGAGATT  850

seq1  CTGACTTGCCTGTTCTCACTGCAGCACTTGCTGACTCTCCTCCTGCTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTGCCTGTTCTCACTGCAGCACTTGCTGACTCTCCTCCTGCTGTC  900

seq1  TTGTCTTACAGTGGCATGTTTGAGGATGACACCTTTGTGTATATGATAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTACAGTGGCATGTTTGAGGATGACACCTTTGTGTATATGATAGA  950

seq1  GCCGCTGGAACTGACTGATGATGAGGTGGGCCTGGGCCATCAATTTCCTT  1000
      |||||||||||||||||||||||| ||||||||||||||||||||||| |
seq2  GCCGCTGGAACTGACTGATGATGA-GTGGGCCTGGGCCATCAATTTCC-T  998

seq1  ATGGTATTTGGTTTTCCCAGCATCAAAGACCGTTTATCCGTGTTCTGTGA  1050
      |||||| ||||||||||||||||||||||| |||||| ||||||||||||
seq2  ATGGTA-TTGGTTTTCCCAGCATCAAAGACTGTTTAT-CGTGTTCTGTGA  1046

seq1  TGCCACACTTAGAATGGTACAGTGCTAGCCCCTTATGCCGGCGAGGCCAG  1100
      |||| ||  ||||||||||||| ||||| |||||||  |||| ||||| |
seq2  TGCC-CAACTAGAATGGTACAG-GCTAG-CCCTTATTGCGGCTAGGCC-G  1092

seq1  ATCAGAGGTGTG-ATGCTGAGCTATTCTGAAGCAAGCCCCTCTTCCCAG-  1148
      |||||||||||| | ||| ||||||||||||||||||||  | |||||| 
seq2  ATCAGAGGTGTGTAGGCTTAGCTATTCTGAAGCAAGCCC--CCTCCCAGA  1140

seq1  TCTTT  1153
      |||||
seq2  TCTTT  1145