BAC Information

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BAC

Clone NameB6Ng01-123C02
Chromosome1 (Build37)
Map Location 93,977,319 - 94,182,962
singlet/doubletdoublet
Overlap geneHdac4
Upstream geneLrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2
Downstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123C02.bB6Ng01-123C02.g
ACCDH926383DH926384
length1,133952
definitionDH926383|Mus musculus domesticus DNA, BAC clone: B6Ng01-123C02, 5' end.DH926384|Mus musculus domesticus DNA, BAC clone: B6Ng01-123C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,181,821 - 94,182,962)(93,977,319 - 93,978,277)
sequence
gaattcttgcattccatttatacaaatcaatgagcagagggctaccgtca
accttcgctgctttatggctcataaacacagggcagccatacaaagcaca
cgttgagaacaatcctattcacggtggcggtgagcagagacagacctttc
atggcgacttagagtccatggagaaggacgggggcagctgtagactgagt
cttttaagctacacgtgggagattttcaaaggcagagccgagcaagagga
cagagtgatgagtcccaggagcccctcgctggagtcaatacggaccagca
tctgctcctcttgcttcgtctaactgctccacttctcccaaaaccacatg
ttacgataaatgaactgaagaccccagtaaaggcgaacacacacggatgg
taaatgcgaacggtataaaactgacagcaacgcttaaataaaatttactg
cggcgctaataaagattccaggaggattttttacactgtcaaaataagcc
atttatttaggcagaaaagtgaacacattaaaactgcacggaaccctttg
aaaaagagggcaggctttatgaacttgcatattacattataaagccataa
aaggctccattaggaatggagaagcttctttttaaataatctcagtataa
ggaagggctttttaagcccattataaaagccagaaacaattaagaaaaat
atgaacccatgtggtctctggaaaattaaaaacttactcacttataaacc
taaaataatttcaagataactattgtaacaggtgagtttggtaaatttac
tgaggataaagttgatgtgccaataaataaatcaactctatgtctattca
atccctattcattcccaagtgtcatacaaggagtctgcctacgtcactgc
atgataaataacagcccttatcctggctgagaggccagatacaatttcca
tgtccttgttatgttcacctagcctctcctccccgatgcctatcacacct
gttgctcatgttgtctagatggagatcccatttctctgggggattgtcat
atctgcttttaataatgccattctatcaagtatgtttttactggtacatt
cttgggaagccacctcagcttttctgcgagtct
gaattccatgcataactaactttctttaactctggtctaaattcagttga
aggaagcttactaaaagaatcaggaatgattttgaaggcgagtgatgttc
agttgtgacttttattgctcagctcttccttggaatctaacaagagtgag
tgcagagacggagaaagcctaaggatgaacactcggaaaagcagtgtcca
cgctgtgcctccaatggagccagccaaccaagaactagggtgattaggaa
ggacaggctttctcaagggtaccttgtgactgaaaagggtaatggatagg
cagcccaagtgaagggtaaggagagtcatcaagagaggacacatccccct
tgccccatccagttctgaactaccaaatgagggaaccagaacctcctctt
tgttcactgtccccagccatcccacagtcactctaggtttgtgttgacaa
gcccctgccctcagaaggaccaagaggtaagcagagggagatggtcagaa
agtgaacatggaagtggcttaccttgcctgtcaaaaaagagggtctgata
ctcctccatatcagaatgaccttttcagccttttaatccatgcttaacca
agagcagtaagaccaaggaagaaaagggggaagattctaggaagaagggg
gggccttttatatgggctaccctggggctcttgggcctggctgggtagga
acaattgcataggagagcccccagcaagcccctgcctcagagatctaaag
atgcctcatgtccagatccccattaacagagtatagaatagaattgtgtt
agctttccttttagttcacgcatacacgtacatacgtacatacgtacaga
catgtgtgtgtgtgtgtgtgtgtgtgtgtttcacatttaagacagcatac
agtgatagtagaaaacacttgtggataaggtttttatttgcaccacaaga
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_94181821_94182962
seq2: B6Ng01-123C02.b_49_1181 (reverse)

seq1  AGACT-GCAGAAAAGCTGAGGTGGCTTTCCCAAG-ATGTACCAGGTAAAG  48
      ||||| ||||||||||||||||||| |||||||| |||||||| ||||| 
seq2  AGACTCGCAGAAAAGCTGAGGTGGC-TTCCCAAGAATGTACCA-GTAAAA  48

seq1  ACATAAACCTTTTGATAG-ATGGCATTATTAAAAGCAGATATGACAAATC  97
      |||||      ||||||| |||||||||||||||||||||||||| ||||
seq2  ACATA-----CTTGATAGAATGGCATTATTAAAAGCAGATATGAC-AATC  92

seq1  CCCCAGAGAAATGGGATCTCCATCTTAGACAACATGAGCAACAGGTGTGA  147
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCCAGAGAAATGGGATCTCCATC-TAGACAACATGAGCAACAGGTGTGA  141

seq1  TAGGCATCGGGGAGGGAGAGGCTAGGTGGAACATAACAAGGACATGGAAA  197
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  TAGGCATCGGGGA-GGAGAGGCTAGGT-GAACATAACAAGGACATGGAAA  189

seq1  TTGTATCTGGCCTCCTCAGCCAGGATAAGGGCTGTTATTTATCATGCAGT  247
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTGGCCT-CTCAGCCAGGATAAGGGCTGTTATTTATCATGCAGT  238

seq1  GACGTAGGCAGACTCCTTGTATGACACTTGGGAATGAATAGGGATTGAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTAGGCAGACTCCTTGTATGACACTTGGGAATGAATAGGGATTGAAT  288

seq1  AGACATAGAGTTGATTTATTTATTGGCACATCAACTTTATCCTCAGTAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGAGTTGATTTATTTATTGGCACATCAACTTTATCCTCAGTAAA  338

seq1  TTTACCAAACTCACCTGTTACAATAGTTATCTTGAAATTATTTTAGGTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAAACTCACCTGTTACAATAGTTATCTTGAAATTATTTTAGGTTT  388

seq1  ATAAGTGAGTAAGTTTTTAATTTTCCAGAGACCACATGGGTTCATATTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGAGTAAGTTTTTAATTTTCCAGAGACCACATGGGTTCATATTTT  438

seq1  TCTTAATTGTTTCTGGCTTTTATAATGGGCTTAAAAAGCCCTTCCTTATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTGTTTCTGGCTTTTATAATGGGCTTAAAAAGCCCTTCCTTATA  488

seq1  CTGAGATTATTTAAAAAGAAGCTTCTCCATTCCTAATGGAGCCTTTTATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTATTTAAAAAGAAGCTTCTCCATTCCTAATGGAGCCTTTTATG  538

seq1  GCTTTATAATGTAATATGCAAGTTCATAAAGCCTGCCCTCTTTTTCAAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATAATGTAATATGCAAGTTCATAAAGCCTGCCCTCTTTTTCAAAG  588

seq1  GGTTCCGTGCAGTTTTAATGTGTTCACTTTTCTGCCTAAATAAATGGCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCGTGCAGTTTTAATGTGTTCACTTTTCTGCCTAAATAAATGGCTT  638

seq1  ATTTTGACAGTGTAAAAAATCCTCCTGGAATCTTTATTAGCGCCGCAGTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACAGTGTAAAAAATCCTCCTGGAATCTTTATTAGCGCCGCAGTA  688

seq1  AATTTTATTTAAGCGTTGCTGTCAGTTTTATACCGTTCGCATTTACCATC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATTTAAGCGTTGCTGTCAGTTTTATACCGTTCGCATTTACCATC  738

seq1  CGTGTGTGTTCGCCTTTACTGGGGTCTTCAGTTCATTTATCGTAACATGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTGTTCGCCTTTACTGGGGTCTTCAGTTCATTTATCGTAACATGT  788

seq1  GGTTTTGGGAGAAGTGGAGCAGTTAGACGAAGCAAGAGGAGCAGATGCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGGGAGAAGTGGAGCAGTTAGACGAAGCAAGAGGAGCAGATGCTG  838

seq1  GTCCGTATTGACTCCAGCGAGGGGCTCCTGGGACTCATCACTCTGTCCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTATTGACTCCAGCGAGGGGCTCCTGGGACTCATCACTCTGTCCTC  888

seq1  TTGCTCGGCTCTGCCTTTGAAAATCTCCCACGTGTAGCTTAAAAGACTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCGGCTCTGCCTTTGAAAATCTCCCACGTGTAGCTTAAAAGACTCA  938

seq1  GTCTACAGCTGCCCCCGTCCTTCTCCATGGACTCTAAGTCGCCATGAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGCTGCCCCCGTCCTTCTCCATGGACTCTAAGTCGCCATGAAAG  988

seq1  GTCTGTCTCTGCTCACCGCCACCGTGAATAGGATTGTTCTCAACGTGTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTCTGCTCACCGCCACCGTGAATAGGATTGTTCTCAACGTGTGC  1038

seq1  TTTGTATGGCTGCCCTGTGTTTATGAGCCATAAAGCAGCGAAGGTTGACG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGGCTGCCCTGTGTTTATGAGCCATAAAGCAGCGAAGGTTGACG  1088

seq1  GTAGCCCTCTGCTCATTGATTTGTATAAATGGAATGCAAGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCTCTGCTCATTGATTTGTATAAATGGAATGCAAGAATTC  1133

seq1: chr1_93977319_93978277
seq2: B6Ng01-123C02.g_66_1017

seq1  GAATTCCATGCATAACTAACTTTCTTTAACTCTGGTCTAAATTCAGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCATAACTAACTTTCTTTAACTCTGGTCTAAATTCAGTTGA  50

seq1  AGGAAGCTTACTAAAAGAATCAGGAATGATTTTGAAGGCGAGTGATGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTTACTAAAAGAATCAGGAATGATTTTGAAGGCGAGTGATGTTC  100

seq1  AGTTGTGACTTTTATTGCTCAGCTCTTCCTTGGAATCTAACAAGAGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGACTTTTATTGCTCAGCTCTTCCTTGGAATCTAACAAGAGTGAG  150

seq1  TGCAGAGACGGAGAAAGCCTAAGGATGAACACTCGGAAAAGCAGTGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGACGGAGAAAGCCTAAGGATGAACACTCGGAAAAGCAGTGTCCA  200

seq1  CGCTGTGCCTCCAATGGAGCCAGCCAACCAAGAACTAGGGTGATTAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTGCCTCCAATGGAGCCAGCCAACCAAGAACTAGGGTGATTAGGAA  250

seq1  GGACAGGCTTTCTCAAGGGTACCTTGTGACTGAAAAGGGTAATGGATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGCTTTCTCAAGGGTACCTTGTGACTGAAAAGGGTAATGGATAGG  300

seq1  CAGCCCAAGTGAAGGGTAAGGAGAGTCATCAAGAGAGGACACATCCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAAGTGAAGGGTAAGGAGAGTCATCAAGAGAGGACACATCCCCCT  350

seq1  TGCCCCATCCAGTTCTGAACTACCAAATGAGGGAACCAGAACCTCCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCATCCAGTTCTGAACTACCAAATGAGGGAACCAGAACCTCCTCTT  400

seq1  TGTTCACTGTCCCCAGCCATCCCACAGTCACTCTAGGTTTGTGTTGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACTGTCCCCAGCCATCCCACAGTCACTCTAGGTTTGTGTTGACAA  450

seq1  GCCCCTGCCCTCAGAAGGACCAAGAGGTAAGCAGAGGGAGATGGTCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGCCCTCAGAAGGACCAAGAGGTAAGCAGAGGGAGATGGTCAGAA  500

seq1  AGTGAACATGGAAGTGGCTTACCTTGCCTGTCAAAAAAGAGGGTCTGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACATGGAAGTGGCTTACCTTGCCTGTCAAAAAAGAGGGTCTGATA  550

seq1  CTCCTCCATATCAGAATGACCTTTTCAGCCTTTTAATCCATGCTTAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCATATCAGAATGACCTTTTCAGCCTTTTAATCCATGCTTAACCA  600

seq1  AGAGCAGTAAGACCAAGGAAGAAAAGGGGGAAGATTCTAGGAAGAAGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTAAGACCAAGGAAGAAAAGGGGGAAGATTCTAGGAAGAAGGGG  650

seq1  GGGCCTTTTATATGGGCTACCCTGGGGCTCTTGGGCCTGGCTGGGTAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTTTATATGGGCTACCCTGGGGCTCTTGGGCCTGGCTGGGTAGGA  700

seq1  ACAATTGCATAGGAGAGCCCCCAGCAAGCCCCTGCCTCAGAGATCTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGCATAGGAGAGCCCCCAGCAAGCCCCTGCCTCAGAGATCTAAAG  750

seq1  ATGCCTCATGTCCAGATCCCCATTAACAGAGTATAGAATAGAATTGTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCATGTCCAGATCCCCATTAACAGAGTATAGAATAGAATTGTGTT  800

seq1  AGCTTTCCTTTTAGTTCACGCATACACGTACATACGTACATACGTACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCCTTTTAGTTCACGCATACACGTACATACGTACATACGTACAGA  850

seq1  CATGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCACATTTAAGGACAGCAT  900
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  CATGTGTGTGTGTGTGTGTGTGTGTGTG-TTTCACATTTAA-GACAGCAT  898

seq1  ACATGTGAAAGTCAGAAAACAACTTGGTGGAATAGGTTTTCTATTTGCAC  950
      ||| |||| ||| ||||||| |||| |||||  ||||||| |||||||||
seq2  ACA-GTGATAGT-AGAAAAC-ACTT-GTGGATAAGGTTTT-TATTTGCAC  943

seq1  CACATGAAT  959
      |||| ||||
seq2  CACAAGAAT  952