BAC Information

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BAC

Clone NameB6Ng01-123K01
Chromosome1 (Build37)
Map Location 72,029,104 - 72,189,078
singlet/doubletdoublet
Overlap geneEG433319, LOC667937, LOC100043255
Upstream geneBard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931
Downstream geneMreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123K01.bB6Ng01-123K01.g
ACCDH926742DH926743
length2051,071
definitionDH926742|Mus musculus domesticus DNA, BAC clone: B6Ng01-123K01, 5' end.DH926743|Mus musculus domesticus DNA, BAC clone: B6Ng01-123K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,188,874 - 72,189,078)(72,029,104 - 72,030,177)
sequence
actattcaccagagagttaagagtagtgggaaaagattgaaagcaaatcc
agaattttttttttttttaaaatggacaccatctaaattttaccatgtaa
aaaacatcgttagcaaacaaacaaacctacaaacccacagagaacctctc
tcctccagggacccttaggcactcagtgtagcccttaggaagaggggctg
agggg
gaattcttctgcctggtgacttttagacaatttgcagccaagactgcaat
gattaatcggctcagtgtccagctggatgcagtagctctccttattttat
tcaatcttccttctccctcttctcatcccttccctggccccttccccacc
ccctctgtatgtgcatgtatacacgtatatgtctatgtgcatacctatcc
ccccctgccctcccccaacatgcacacacacacacacaccacatacacac
aaccacaagactgttctgagagttctggagaacttggaaaaatgcaaatc
ttattactaagaagtacagtgctattacaacagtaccaaaaaatgtggaa
gtgttttaagaactggatcacatgtaaagggggctcctaagagttcttga
tgttgggaacaagcaaaagaaacttattctaagcactactgtttcatttt
cagaaaccaaattcaagatcccataagtaatataaacatttctgttataa
acagttgtctgagaccagccgtctcaaagacagcttctccatcttgctgg
cagagtcaaacatattcatattcccaagcctaggaatgaacgcctatccc
acttctctgaatgttttcttaattgtctgctaaatgataaataatataga
cattgctatctaaaccatggtgtacgtgttgtattatatatatatatata
tatatatataactgcctgttatgccctaattaactatatgcagctgaccc
gttccttatccccttattactctgagttccagacctaatatcaaggagaa
tgaatttaagaaccttaaagtcaggtgtccaacagatactcccttgctaa
cccatagtgtcaaatacaactggataactctacagctccccccacaccca
aataagtggctcccatactttaaaatattgtacattctcccttggggatg
tagttcagatcccaaactgactgcctccctgagtgctgccaaaacaaagc
ttccttttaagctttcgtatactgatatgagttgtctcagctcacccacc
ccagcgcgtgaccactagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_72188874_72189078
seq2: B6Ng01-123K01.b_51_255 (reverse)

seq1  CCCCTCAGCCCCTCTTCCTAAGGGCTACACTGAGTGCCTAAGGGTCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCAGCCCCTCTTCCTAAGGGCTACACTGAGTGCCTAAGGGTCCCTG  50

seq1  GAGGAGAGAGGTTCTCTGTGGGTTTGTAGGTTTGTTTGTTTGCTAACGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGAGGTTCTCTGTGGGTTTGTAGGTTTGTTTGTTTGCTAACGAT  100

seq1  GTTTTTTACATGGTAAAATTTAGATGGTGTCCATTTTAAAAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTACATGGTAAAATTTAGATGGTGTCCATTTTAAAAAAAAAAAAA  150

seq1  ATTCTGGATTTGCTTTCAATCTTTTCCCACTACTCTTAACTCTCTGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGATTTGCTTTCAATCTTTTCCCACTACTCTTAACTCTCTGGTGA  200

seq1  ATAGT  205
      |||||
seq2  ATAGT  205

seq1: chr1_72029104_72030177
seq2: B6Ng01-123K01.g_67_1137

seq1  GAATTCTTCTGCCTGGTGACTTTTAGACAATTTGCAGCCAAGACTGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGCCTGGTGACTTTTAGACAATTTGCAGCCAAGACTGCAAT  50

seq1  GATTAATCGGCTCAGTGTCCAGCTGGATGCAGTAGCTCTCCTTATTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATCGGCTCAGTGTCCAGCTGGATGCAGTAGCTCTCCTTATTTTAT  100

seq1  TCAATCTTCCTTCTCCCTCTTCTCATCCCTTCCCTGGCCCCTTCCCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTTCCTTCTCCCTCTTCTCATCCCTTCCCTGGCCCCTTCCCCACC  150

seq1  CCCTCTGTATGTGCATGTATACACGTATATGTCTATGTGCATACCTATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTATGTGCATGTATACACGTATATGTCTATGTGCATACCTATCC  200

seq1  CCCCCTGCCCTCCCCCAACATGCACACACACACACACACCACATACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGCCCTCCCCCAACATGCACACACACACACACACCACATACACAC  250

seq1  AACCACAAGACTGTTCTGAGAGTTCTGGAGAACTTGGAAAAATGCAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAGACTGTTCTGAGAGTTCTGGAGAACTTGGAAAAATGCAAATC  300

seq1  TTATTACTAAGAAGTACAGTGCTATTACAACAGTACCAAAAAATGTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTAAGAAGTACAGTGCTATTACAACAGTACCAAAAAATGTGGAA  350

seq1  GTGTTTTAAGAACTGGATCACATGTAAAGGGGGCTCCTAAGAGTTCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTAAGAACTGGATCACATGTAAAGGGGGCTCCTAAGAGTTCTTGA  400

seq1  TGTTGGGAACAAGCAAAAGAAACTTATTCTAAGCACTACTGTTTCATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGAACAAGCAAAAGAAACTTATTCTAAGCACTACTGTTTCATTTT  450

seq1  CAGAAACCAAATTCAAGATCCCATAAGTAATATAAACATTTCTGTTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCAAATTCAAGATCCCATAAGTAATATAAACATTTCTGTTATAA  500

seq1  ACAGTTGTCTGAGACCAGCCGTCTCAAAGACAGCTTCTCCATCTTGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGTCTGAGACCAGCCGTCTCAAAGACAGCTTCTCCATCTTGCTGG  550

seq1  CAGAGTCAAACATATTCATATTCCCAAGCCTAGGAATGAACGCCTATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCAAACATATTCATATTCCCAAGCCTAGGAATGAACGCCTATCCC  600

seq1  ACTTCTCTGAATGTTTTCTTAATTGTCTGCTAAATGATAAATAATATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTGAATGTTTTCTTAATTGTCTGCTAAATGATAAATAATATAGA  650

seq1  CATTGCTATCTAAACCATGGTGTACGTGTTGTAT----TATATATATATA  696
      ||||||||||||||||||||||||||||||||||    ||||||||||||
seq2  CATTGCTATCTAAACCATGGTGTACGTGTTGTATTATATATATATATATA  700

seq1  TATATATATAACTGCCTGTTATGCCCTAATTAACTATATGCAGCTGACCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATAACTGCCTGTTATGCCCTAATTAACTATATGCAGCTGACCC  750

seq1  GTTCCTTTATCCCCTTATTACTCTGAGTTCCAGACCTAATATCAAGGAGA  796
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCC-TTATCCCCTTATTACTCTGAGTTCCAGACCTAATATCAAGGAGA  799

seq1  ATGAA-TTAAGAACCTTAAAGTCAGGTGTCCAACAGATACTCCCTTGCTT  845
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGAATTTAAGAACCTTAAAGTCAGGTGTCCAACAGATACTCCCTTGC-T  848

seq1  AACCCATAGTGTCAAAATACAACTGGATAACTCTACAGCTCCCCCCACAC  895
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACCCATAGTGTC-AAATACAACTGGATAACTCTACAGCTCCCCCCACAC  897

seq1  CCAAATAAGTGGCTCCCATACTTTAAAAATATTGTACATTCTCCCTTTGG  945
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  CCAAATAAGTGGCTCCCATACTTT-AAAATATTGTACATTCTCCC-TTGG  945

seq1  GGATGTAGTTCAGATCCCAAACTGACTGCCTCCCTGAGTGCTGCCAAAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTAGTTCAGATCCCAAACTGACTGCCTCCCTGAGTGCTGCCAAAAC  995

seq1  AAAGCTTTCCTTTTTAAGCTTTCGTAT-CTGATATGAGTTTTCTCAGCTT  1044
      |||||||  | |||||||||||||||| |||||||||||| |||||||| 
seq2  AAAGCTT--CCTTTTAAGCTTTCGTATACTGATATGAGTTGTCTCAGCT-  1042

seq1  CCACCCAACCCAGCGC-TGACACACTAGAAA  1074
       |||||| |||||||| |||| |||||||||
seq2  -CACCCACCCCAGCGCGTGAC-CACTAGAAA  1071