BAC Information

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BAC

Clone NameB6Ng01-124B05
Chromosome1 (Build37)
Map Location 44,061,546 - 44,185,291
singlet/doubletdoublet
Overlap geneA530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm
Upstream geneGpr45, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2
Downstream geneErcc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124B05.bB6Ng01-124B05.g
ACCDH927075DH927076
length1,0191,047
definitionDH927075|Mus musculus domesticus DNA, BAC clone: B6Ng01-124B05, 5' end.DH927076|Mus musculus domesticus DNA, BAC clone: B6Ng01-124B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,183,892 - 44,185,291)(44,061,546 - 44,062,615)
sequence
gaattctcatttgagtgggccaggcatcctctgcagcttctgaaatactg
gagaagcaaagcaaaccgctctccttttgtcaagagattcagagattctt
ctcaggctaagcacatcccatgaacccctgggcagaaatccccagaacag
aactgtcactggggacctaaaaggaaaacacaaatcctccagggagagac
ggagacaaagaaagaaagctggaaactctaaattgaaactcacgggccat
gacaaacaagcacgcatatgatgaacttttagaacaatctagaaaggaaa
gtgtcaatttagtctgaaaagtatacatacaggaaatattgttcatttta
ctaggtatggcaataattaaaatagctgtaagctaacaatcactgcctat
agaattagtcaacaaagaacaaccaggtgaatgactattccgactttaag
tgtcagccaatgtggcttaacattaagagggatcactgaatgagactgac
agccaggctgagctaaactagactacttccaaaatcggagatatacctaa
agtatctagacataattttggaactaacagtgtttatagttaatataatt
tattaacctatactcagcaaaattaatgtcaaattacatatgtttaagat
tggaaaaagtaaaaactgacatggccacataccatcgcctaaggtctaac
actttgcgttgtttaacatcatcaagaggagaatagtggagacactccct
ctgatgccgccctttttatccgacgtttttcttcttggaaaattgtttct
ttacattgcctacagaacaaggagtaatacagaaatgttcagataagtaa
cccgtgccagaagttacaacagattagaggactgccatgcatctgaaatg
gtatctgcaatgtcctcaagtatacttgggctttctagaatctactcttt
cttagagagaagcggaagattgaacattgacattcgaaacggatttctat
cagattgtatcagtcagag
gaattcaggaatcagactgccaactcttaacaaaaatgtgcacaggatat
agaggagctgtttaattccctttgttttcatttgtgagtttacaagttat
tacatagcacatatcggcaatgattccatgatctaactgcctcaaaactc
agcttatagcagcaaattttgttactagctgattccaagtctgagccatc
agaatgtatgatttacaagaataaaagcatatggaacagtatgtagaaat
cgcctagcccaaaaagaaaaagaaacagacttttgggagtctcttgagat
aactatggatgctatgtaatggggcaatggaatttgtacactatgttttt
attgctaagttattttacttaagaaaagtattttagagtcaagaactggt
ggcacaagcctttaattccaggactcaggaggcagagacagttgagttca
aggctagcctggtctacagaacaatttccagtatagccaaggctggacag
cgaaaccctgtctcaaaaaaggtttacatctcatactgtacttggagaag
aaaaggttttcctgcaattttcttcaactttgtgacagtgaaaaagttaa
ctggaggtttagaggggaaaaaacgacttccagtgagttgaaatcctatg
gggatgggaggcccggaggctggtctacgtctggtgttacggtgagctgt
ggtggtggctctgtgatgaacagtatatgagagaccaggccgtagttttt
ctccttactctaactatagtcagtccagcctttctgtaaatattctgtcc
ggttacagaatagcatggaatttgtgtcctaccctagaaatacaaataaa
gagtatctgtaagtccagaagatgcttagaagacaggatccattgctatc
attttatttctctacattatatacttcaaaggtagtgcatctaaaagaaa
tgggctctatttgagagactttttgtgtttgttttacattttaggtttgt
tgttacttgtgtggcgggcccccattcaagcatcaaccctaaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_44183892_44185291
seq2: B6Ng01-124B05.b_48_1066 (reverse)

seq1  CTCTGACTGTGTTGCCCATGGAAACTTCTAATATCATATGTGCATTTGAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CAGCTTTGAAAATCAAAAAGAACAAAATATAAGTATTAAAGATAATACAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TAGCTTCAAAAAGGCTACTGACATAACTAGAATATTATTATCTTACAGTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTGCAGAGATGTGATAATATTTTCTAATTCAGGAGGTATTAAGACATTTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TGTTTTGAAAAAATTTGAGTTAAAAAGGAACATTCATTTTGATCAAAGTC  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTGATTTTATTTAAAGCTACAATTATGTGGCTCTCTTTTCTAAACCATAT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TCTAAAGTCCATTTTATTTCTCATGTTATTTTAACCCGCTCTAAGAGTCT  350
                                                        
seq2  --------------------------------------------------  0

seq1  AGCTCTGGACTTGGATACAATCTTGATAGGAAATACCGTTTCTGATGGTT  400
        |||| ||||  ||||||||| ||||| ||||| |||||||  |||  |
seq2  --CTCT-GACT--GATACAATC-TGATA-GAAAT-CCGTTTCGAATG--T  40

seq1  CAAATTGTTTTAAATTCTCTTCCTGCTTTCTCTCTAGAGAAGAGTAGTAT  450
      |||    | || ||   |||||| || |||||||||   |||||||| ||
seq2  CAA----TGTTCAA---TCTTCC-GC-TTCTCTCTAAGAAAGAGTAG-AT  80

seq1  TCTAGAAAGCACAGGTATTACTTTGAGACATTTGCAGATACCATTTTCAG  500
      |||||||||| || ||| |||||   |||| |||||||||||| ||||||
seq2  TCTAGAAAGCCCAAGTA-TACTTGAGGACA-TTGCAGATACCA-TTTCAG  127

seq1  AATGCATGGCCAGTCCTCTAATTCTGTTGTAACTTCTGGCACGGGTTTTA  550
       |||||||| ||||||||||| |||||||||||||||||||||||  |||
seq2  -ATGCATGG-CAGTCCTCTAA-TCTGTTGTAACTTCTGGCACGGG--TTA  172

seq1  CTTTATCTGAACATTTCTTGTATTACTTCTTTGTTCTGTAGGCAATGTAA  600
      | ||||||||||||||| |||||||| || ||||||||||||||||||||
seq2  C-TTATCTGAACATTTC-TGTATTAC-TCCTTGTTCTGTAGGCAATGTAA  219

seq1  AGAAACAATTTTCCAAGAAG-AAAACGTCGGATAAAAAAGGGCGGCATCA  649
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  AGAAACAATTTTCCAAGAAGAAAAACGTCGGAT-AAAAAGGGCGGCATCA  268

seq1  GAGGGAGTGTCTCCACTATTCTCCTCTTGATGATGTTAAACAACGCAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGTGTCTCCACTATTCTCCTCTTGATGATGTTAAACAACGCAAAG  318

seq1  TGTTAGACCTTAGGCGATGGTATGTGGCCATGTCAGTTTTTACTTTTTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGACCTTAGGCGATGGTATGTGGCCATGTCAGTTTTTACTTTTTCC  368

seq1  AATCTTAAACATATGTAATTTGACATTAATTTTGCTGAGTATAGGTTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAACATATGTAATTTGACATTAATTTTGCTGAGTATAGGTTAAT  418

seq1  AAATTATATTAACTATAAACACTGTTAGTTCCAAAATTATGTCTAGATAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATTAACTATAAACACTGTTAGTTCCAAAATTATGTCTAGATAC  468

seq1  TTTAGGTATATCTCCGATTTTGGAAGTAGTCTAGTTTAGCTCAGCCTGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTATATCTCCGATTTTGGAAGTAGTCTAGTTTAGCTCAGCCTGGC  518

seq1  TGTCAGTCTCATTCAGTGATCCCTCTTAATGTTAAGCCACATTGGCTGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTCTCATTCAGTGATCCCTCTTAATGTTAAGCCACATTGGCTGAC  568

seq1  ACTTAAAGTCGGAATAGTCATTCACCTGGTTGTTCTTTGTTGACTAATTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGTCGGAATAGTCATTCACCTGGTTGTTCTTTGTTGACTAATTC  618

seq1  TATAGGCAGTGATTGTTAGCTTACAGCTATTTTAATTATTGCCATACCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCAGTGATTGTTAGCTTACAGCTATTTTAATTATTGCCATACCTA  668

seq1  GTAAAATGAACAATATTTCCTGTATGTATACTTTTCAGACTAAATTGACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGAACAATATTTCCTGTATGTATACTTTTCAGACTAAATTGACA  718

seq1  CTTTCCTTTCTAGATTGTTCTAAAAGTTCATCATATGCGTGCTTGTTTGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTCTAGATTGTTCTAAAAGTTCATCATATGCGTGCTTGTTTGT  768

seq1  CATGGCCCGTGAGTTTCAATTTAGAGTTTCCAGCTTTCTTTCTTTGTCTC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCCGTGAGTTTCAATTTAGAGTTTCCAGCTTTCTTTCTTTGTCTC  818

seq1  CGTCTCTCCCTGGAGGATTTGTGTTTTCCTTTTAGGTCCCCAGTGACAGT  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCTCCCTGGAGGATTTGTGTTTTCCTTTTAGGTCCCCAGTGACAGT  868

seq1  TCTGTTCTGGGGATTTCTGCCCAGGGGTTCATGGGATGTGCTTAGCCTGA  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTGGGGATTTCTGCCCAGGGGTTCATGGGATGTGCTTAGCCTGA  918

seq1  GAAGAATCTCTGAATCTCTTGACAAAAGGAGAGCGGTTTGCTTTGCTTCT  1349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATCTCTGAATCTCTTGACAAAAGGAGAGCGGTTTGCTTTGCTTCT  968

seq1  CCAGTATTTCAGAAGCTGCAGAGGATGCCTGGCCCACTCAAATGAGAATT  1399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTTCAGAAGCTGCAGAGGATGCCTGGCCCACTCAAATGAGAATT  1018

seq1  C  1400
      |
seq2  C  1019

seq1: chr1_44061546_44062615
seq2: B6Ng01-124B05.g_70_1116

seq1  GAATTCAGGAATCAGACTGCCAACTCTTAACAAAAATGTGCACAGGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAATCAGACTGCCAACTCTTAACAAAAATGTGCACAGGATAT  50

seq1  AGAGGAGCTGTTTAATTCCCTTTGTTTTCATTTGTGAGTTTACAAGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCTGTTTAATTCCCTTTGTTTTCATTTGTGAGTTTACAAGTTAT  100

seq1  TACATAGCACATATCGGCAATGATTCCATGATCTAACTGCCTCAAAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGCACATATCGGCAATGATTCCATGATCTAACTGCCTCAAAACTC  150

seq1  AGCTTATAGCAGCAAATTTTGTTACTAGCTGATTCCAAGTCTGAGCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATAGCAGCAAATTTTGTTACTAGCTGATTCCAAGTCTGAGCCATC  200

seq1  AGAATGTATGATTTACAAGAATAAAAGCATATGGAACAGTATGTAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTATGATTTACAAGAATAAAAGCATATGGAACAGTATGTAGAAAT  250

seq1  CGCCTAGCCCAAAAAGAAAAAGAAACAGACTTTTGGGAGTCTCTTGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTAGCCCAAAAAGAAAAAGAAACAGACTTTTGGGAGTCTCTTGAGAT  300

seq1  AACTATGGATGCTATGTAATGGGGCAATGGAATTTGTACACTATGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGGATGCTATGTAATGGGGCAATGGAATTTGTACACTATGTTTTT  350

seq1  ATTGCTAAGTTATTTTACTTAAGAAAAGTATTTTAGAGTCAAGAACTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAAGTTATTTTACTTAAGAAAAGTATTTTAGAGTCAAGAACTGGT  400

seq1  GGCACAAGCCTTTAATTCCAGGACTCAGGAGGCAGAGACAGTTGAGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAGCCTTTAATTCCAGGACTCAGGAGGCAGAGACAGTTGAGTTCA  450

seq1  AGGCTAGCCTGGTCTACAGAACAATTTCCAGTATAGCCAAGGCTGGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGCCTGGTCTACAGAACAATTTCCAGTATAGCCAAGGCTGGACAG  500

seq1  CGAAACCCTGTCTCAAAAAAGGTTTACATCTCATACTGTACTTGGAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAACCCTGTCTCAAAAAAGGTTTACATCTCATACTGTACTTGGAGAAG  550

seq1  AAAAGGTTTTCCTGCAATTTTCTTCAACTTTGTGACAGTGAAAAAGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTTTCCTGCAATTTTCTTCAACTTTGTGACAGTGAAAAAGTTAA  600

seq1  CTGGAGGTTTAGAGGGGAAAAAACGACTTCCAGTGAGTTGAAATCCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGTTTAGAGGGGAAAAAACGACTTCCAGTGAGTTGAAATCCTATG  650

seq1  GGGATGGGAGGCCCGGAGGCTGGTCTACGTCTGGTGTTACGGTGAGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGGAGGCCCGGAGGCTGGTCTACGTCTGGTGTTACGGTGAGCTGT  700

seq1  GGTGGTGGCTCTGTGATGAACAGTATATGAGAGACCAGGCCGTAGTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGCTCTGTGATGAACAGTATATGAGAGACCAGGCCGTAGTTTTT  750

seq1  CTCCTTACTCTAACTATAGTCAGTCCAGCCTTTCTGTAAATATTCTGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTACTCTAACTATAGTCAGTCCAGCCTTTCTGTAAATATTCTGTCC  800

seq1  GGTTACAGAATAGCATGGAATTTGTGTCCTACCCTAGAAATACAAATAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTTACAGAATAGCATGGAATTTGTGTCCTACCCTAGAAATACAAATAAA  850

seq1  GAGTATCTGTAAGTCCAAGAAGATGCTTAGAAGACAGGATCCATTTGCTA  900
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  GAGTATCTGTAAGTCC-AGAAGATGCTTAGAAGACAGGATCCA-TTGCTA  898

seq1  TCATTTTATTTCTCTACATTATATACTTCAAAGGTAGTGCATCTAAAAAG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCATTTTATTTCTCTACATTATATACTTCAAAGGTAGTGCATCT-AAAAG  947

seq1  AAATGGGCTCTATTTGAGAGACTTTTTTGTTGTTTTGTTTTTTAACATTT  1000
      |||||||||||||||||||||| |||||||   ||||||||   ||||||
seq2  AAATGGGCTCTATTTGAGAGAC-TTTTTGT--GTTTGTTTT---ACATTT  991

seq1  TTAGTGTTTTTGTTTGGTTACATTTGTGTGGCGTGTGCACCCATTCAAGG  1050
      |  |    ||||||  |||||  |||||||||  | || |||||||||| 
seq2  TAGG----TTTGTT--GTTAC--TTGTGTGGC--GGGCCCCCATTCAAG-  1030

seq1  CAATCAACACCTAGTGGGGG  1070
        |||||| ||||  |||||
seq2  -CATCAAC-CCTA-AGGGGG  1047