BAC Information

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BAC

Clone NameB6Ng01-124I04
Chromosome1 (Build37)
Map Location 68,228,898 - 68,436,158
singlet/doubletdoublet
Overlap geneErbb4
Upstream geneCps1, Kif22-ps
Downstream geneLOC667842, EG241084
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124I04.bB6Ng01-124I04.g
ACCDH927398DH927399
length1,1951,081
definitionDH927398|Mus musculus domesticus DNA, BAC clone: B6Ng01-124I04, 5' end.DH927399|Mus musculus domesticus DNA, BAC clone: B6Ng01-124I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,228,898 - 68,230,107)(68,435,066 - 68,436,158)
sequence
gaattctggtggcacagcacacattccttttgcactggaataataacaga
ataaatacagcctaacagcctaagaacaaagtgtttctatcctcacttgc
ttggtgctttggtgccatatttaacataactctctcaatctttcctttgt
gaatatgcttctccttaaagagatatggttgcttctgttttcaagatgtt
gtacaccttactttaaaccccatgtgtcagagaggggagaaaattcagga
tatcgatagaaagacttagaagagatggaaagaagtgaccagatggaatg
aagaagagtcactgctttcatggtctgactagtgcaaggtggcagtgaga
gtcagcagatgaaatggtctcctggaccacaaactctgcaactcaatatt
ctggtcaggtcccactgtgtctttccatccctgagtctcagaaaaatgga
tatctgagttcaatccattgggatgaagtctcagaaacacattgtggaat
actgccttcccacagcaagcaggatactctttgtaacacctccatcttgt
ggaatcaaggcaaacgtttgtagttggtgtgaatttttgatgcaggtttt
gcctttctttctattctctaccagtttgttcattttcatcaacgatccca
gtctggagctcatgaatgaatttctcactatgtaaaggcatcaataaaca
cccacttttgcactcattaactaacacatgtatattaacgtctacaactg
tacctttaataagtagcagaattacattgttacaggtgaagaacctgaga
tttacaatgtgcaactataaaataaccccaaacataacgctttctagaag
cagaaaccacatttttagaaactggtgatcgattctcttagattcttttg
atttttcttggattctgcttaaaatattgctttcattccacacagaattc
tttcattctctttataaacagagcgtagaaagcatcgctcacgtctttga
cttttgcctatggaaggagatttgcgtcattatagcacacataattggca
atgccttaagcaaaaaggacaaacatagcacatggcctgcagttgctgga
atagctctccgggtgccacgtctggaacatatgaggaagatctctgctgg
tggcttctctggatctttatctaaaaatctagaacactgattttt
gaattctttgtctccaaaaagtttgggtatgctgtgtactcatttacatt
aaattctaggaactatttgatatttttatccctgtattaatccatttatc
atccagtacagagttactcagtttctattagtttgtaagctttctgttgt
tggtatccagctttagtccatggtggactgacaggaagcagggagttatt
tcaattttcttgtatctgtccagacttgccttgtgtccacatccgtggtc
aagtttagagaaatttcaacaaggtgcagaaaagaaagaatatccttttg
ggtttgggtaaaatatagagactgtcctcaagtggacaatggaatcaaca
aataatttttcacattgtgctccgtatacatacatcagcaaacttctgta
ttcaaagtagattcccaatactctccttacggaaatgagaatctatgtgc
aaatgttctgtaaatatcggttacgttcatttggtttatagcatctgtca
gcaccgatgtttatttagtttttgtttggacgccctgtccatggggaagg
gttggatattaaagtctactgctatcagtgtgtgagtttctatgggactt
cagatgtagaagtgagtgcaagattaaaaaaaagtgcaagattaaaggag
gatttagtaacagccactcttcctgccctctctgttttcttaacaaactc
aatattttgattttcccttaaaagagaacataactgtcgtattctgtttt
taaagttcctttgttgatttaaaggcagatttatataacaggagtttcct
atgagattgtatgctggaacctgattagaaaatcctattatggagcatac
actacagggtatatattaaatttaaactcagtatttatatccttttgata
ataaatattaagtataattacttatctttacccgttaattatttatttat
tcaacttagttactttaattatatttcaaatttttatgatcattttaatc
aatgatactcctttaacaatcccatcctaccttacttcccctcctccgcg
tggcctctttaggcgtgctcctctcaaacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_68228898_68230107
seq2: B6Ng01-124I04.b_48_1242

seq1  GAATTCTGGTGGCACAGCACACATTCCTTTTGCACTGGAATAATAACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTGGCACAGCACACATTCCTTTTGCACTGGAATAATAACAGA  50

seq1  ATAAATACAGCCTAACAGCCTAAGAACAAAGTGTTTCTATCCTCACTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACAGCCTAACAGCCTAAGAACAAAGTGTTTCTATCCTCACTTGC  100

seq1  TTGGTGCTTTGGTGCCATATTTAACATAACTCTCTCAATCTTTCCTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCTTTGGTGCCATATTTAACATAACTCTCTCAATCTTTCCTTTGT  150

seq1  GAATATGCTTCTCCTTAAAGAGATATGGTTGCTTCTGTTTTCAAGATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGCTTCTCCTTAAAGAGATATGGTTGCTTCTGTTTTCAAGATGTT  200

seq1  GTACACCTTACTTTAAACCCCATGTGTCAGAGAGGGGAGAAAATTCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACCTTACTTTAAACCCCATGTGTCAGAGAGGGGAGAAAATTCAGGA  250

seq1  TATCGATAGAAAGACTTAGAAGAGATGGAAAGAAGTGACCAGATGGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGATAGAAAGACTTAGAAGAGATGGAAAGAAGTGACCAGATGGAATG  300

seq1  AAGAAGAGTCACTGCTTTCATGGTCTGACTAGTGCAAGGTGGCAGTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGTCACTGCTTTCATGGTCTGACTAGTGCAAGGTGGCAGTGAGA  350

seq1  GTCAGCAGATGAAATGGTCTCCTGGACCACAAACTCTGCAACTCAATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAGATGAAATGGTCTCCTGGACCACAAACTCTGCAACTCAATATT  400

seq1  CTGGTCAGGTCCCACTGTGTCTTTCCATCCCTGAGTCTCAGAAAAATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAGGTCCCACTGTGTCTTTCCATCCCTGAGTCTCAGAAAAATGGA  450

seq1  TATCTGAGTTCAATCCATTGGGATGAAGTCTCAGAAACACATTGTGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGTTCAATCCATTGGGATGAAGTCTCAGAAACACATTGTGGAAT  500

seq1  ACTGCCTTCCCACAGCAAGCAGGATACTCTTTGTAACACCTCCATCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTTCCCACAGCAAGCAGGATACTCTTTGTAACACCTCCATCTTGT  550

seq1  GGAATCAAGGCAAACGTTTGTAGTTGGTGTGAATTTTTGATGCAGGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAAGGCAAACGTTTGTAGTTGGTGTGAATTTTTGATGCAGGTTTT  600

seq1  GCCTTTCTTTCTATTCTCTACCAGTTTGTTCATTTTCATCAACGATCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTTTCTATTCTCTACCAGTTTGTTCATTTTCATCAACGATCCCA  650

seq1  GTCTGGAGCTCATGAATGAATTTCTCACTATGTAAAGGCATCAATAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGCTCATGAATGAATTTCTCACTATGTAAAGGCATCAATAAACA  700

seq1  CCCAC-TTTGCACTCATTAACTAACACATGTATATTAACGTCTACAACTG  749
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTTGCACTCATTAACTAACACATGTATATTAACGTCTACAACTG  750

seq1  TACCTTTAATAAGTAGCAGAATTACATTGTTACAGGTGAAGAACCTGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTAATAAGTAGCAGAATTACATTGTTACAGGTGAAGAACCTGAGA  800

seq1  TTTACAATGTGCAACTATAAAATAACCCCAAACATAACGCTTTCTAGAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATGTGCAACTATAAAATAACCCCAAACATAACGCTTTCTAGAAG  850

seq1  CAGAAACCACATTTTTAGAAACTGGTGATCGATTCTCTTAGATTCTTTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCACATTTTTAGAAACTGGTGATCGATTCTCTTAGATTCTTTTG  900

seq1  ATTTTTCTTGGATTCTGCTTAAAATATTGCTTTCATTCCACACAGAATTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTGGATTCTGCTTAAAATATTGCTTTCATTCCACACAGAATTC  950

seq1  -TTCATTCTCTTTAATAAACAGGAGCGTAGGAAAGCATCGCTCACGTCTT  998
       |||||||||||| ||||||| ||||||| ||||||||||||||||||||
seq2  TTTCATTCTCTTT-ATAAACA-GAGCGTA-GAAAGCATCGCTCACGTCTT  997

seq1  TGACTTTTGCCTATGGAAGGGAGATCTGCGTACATTTATAGCACACATAA  1048
      |||||||||||||||||| |||||| ||||| || |||||||||||||||
seq2  TGACTTTTGCCTATGGAA-GGAGATTTGCGT-CA-TTATAGCACACATAA  1044

seq1  TTGGCAAATGCCTTAGGCAAAAA-GACAAACATAGCACATGGCCTGCAGG  1097
      ||||| ||||||||| ||||||| |||||||||||||||||||||||| |
seq2  TTGGC-AATGCCTTAAGCAAAAAGGACAAACATAGCACATGGCCTGCA-G  1092

seq1  TTGCTGGAATAGCTTCCTCGGTGCCAACTGCTGGAGCATTTGAGGGAG-T  1146
      ||||||||||||||  |  |||||| ||  ||||| ||| ||||| || |
seq2  TTGCTGGAATAGCTCTCCGGGTGCC-ACGTCTGGAACATATGAGGAAGAT  1141

seq1  CTCTGCTGGGTGGCTTCTCTGGACATTCTTTATCTAAAACAATCCAGAGA  1196
      ||||||| |||||||||||||||   ||||||||||||  |||| ||   
seq2  CTCTGCT-GGTGGCTTCTCTGGA---TCTTTATCTAAA--AATCTAG---  1182

seq1  AACTACTGATTTTT  1210
      ||| ||||||||||
seq2  AAC-ACTGATTTTT  1195

seq1: chr1_68435066_68436158
seq2: B6Ng01-124I04.g_66_1146 (reverse)

seq1  TAGTTTGTGGAGGAGCA-GCCTCATAGAGGCAAAGCGGAGGAGGGGAAGG  49
      |||||||  |||||||| |||| | |||||| | |||||||||||||| |
seq2  TAGTTTG-AGAGGAGCACGCCT-AAAGAGGCCACGCGGAGGAGGGGAA-G  47

seq1  TAGGGTAGGATTGGGGATTTGTAAAGGAGTATCATTTGAATAAAATGATT  99
      || ||||||||  ||||||  ||||||||||||| |||| |||||||| |
seq2  TAAGGTAGGAT--GGGATTGTTAAAGGAGTATCA-TTGATTAAAATGA-T  93

seq1  CATAAAAAATTTGAAATATAATTAAAAGATAACTAAGTTGAATAAATAAA  149
      ||| ||||||||||||||||||||||   |||||||||||||||||||||
seq2  CAT-AAAAATTTGAAATATAATTAAA--GTAACTAAGTTGAATAAATAAA  140

seq1  TAATTAAACGGGTAAAAGATAAGTAATTATACTTAATATTTATTATCAAA  199
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAATT-AACGGGT-AAAGATAAGTAATTATACTTAATATTTATTATCAAA  188

seq1  AGGAATATAAATACTGAGTTTAAATTTAATATATACCCTGTAGTGTATGC  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGG-ATATAAATACTGAGTTTAAATTTAATATATACCCTGTAGTGTATGC  237

seq1  TCCATAATAGGATTTTCTAATCAGGTTCCAGCATACAATCTCATAGGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAATAGGATTTTCTAATCAGGTTCCAGCATACAATCTCATAGGAAA  287

seq1  CTCCTGTTATATAAATCTGCCTTTAAATCAACAAAGGAACTTTAAAAACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTATATAAATCTGCCTTTAAATCAACAAAGGAACTTTAAAAACA  337

seq1  GAATACGACAGTTATGTTCTCTTTTAAGGGAAAATCAAAATATTGAGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACGACAGTTATGTTCTCTTTTAAGGGAAAATCAAAATATTGAGTTT  387

seq1  GTTAAGAAAACAGAGAGGGCAGGAAGAGTGGCTGTTACTAAATCCTCCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAAAACAGAGAGGGCAGGAAGAGTGGCTGTTACTAAATCCTCCTT  437

seq1  TAATCTTGCACTTTTTTTTAATCTTGCACTCACTTCTACATCTGAAGTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTGCACTTTTTTTTAATCTTGCACTCACTTCTACATCTGAAGTCC  487

seq1  CATAGAAACTCACACACTGATAGCAGTAGACTTTAATATCCAACCCTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAACTCACACACTGATAGCAGTAGACTTTAATATCCAACCCTTCC  537

seq1  CCATGGACAGGGCGTCCAAACAAAAACTAAATAAACATCGGTGCTGACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGACAGGGCGTCCAAACAAAAACTAAATAAACATCGGTGCTGACAG  587

seq1  ATGCTATAAACCAAATGAACGTAACCGATATTTACAGAACATTTGCACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATAAACCAAATGAACGTAACCGATATTTACAGAACATTTGCACAT  637

seq1  AGATTCTCATTTCCGTAAGGAGAGTATTGGGAATCTACTTTGAATACAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCATTTCCGTAAGGAGAGTATTGGGAATCTACTTTGAATACAGA  687

seq1  AGTTTGCTGATGTATGTATACGGAGCACAATGTGAAAAATTATTTGTTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTGATGTATGTATACGGAGCACAATGTGAAAAATTATTTGTTGA  737

seq1  TTCCATTGTCCACTTGAGGACAGTCTCTATATTTTACCCAAACCCAAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTGTCCACTTGAGGACAGTCTCTATATTTTACCCAAACCCAAAAG  787

seq1  GATATTCTTTCTTTTCTGCACCTTGTTGAAATTTCTCTAAACTTGACCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCTTTCTTTTCTGCACCTTGTTGAAATTTCTCTAAACTTGACCAC  837

seq1  GGATGTGGACACAAGGCAAGTCTGGACAGATACAAGAAAATTGAAATAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGGACACAAGGCAAGTCTGGACAGATACAAGAAAATTGAAATAAC  887

seq1  TCCCTGCTTCCTGTCAGTCCACCATGGACTAAAGCTGGATACCAACAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTTCCTGTCAGTCCACCATGGACTAAAGCTGGATACCAACAACA  937

seq1  GAAAGCTTACAAACTAATAGAAACTGAGTAACTCTGTACTGGATGATAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTTACAAACTAATAGAAACTGAGTAACTCTGTACTGGATGATAAA  987

seq1  TGGATTAATACAGGGATAAAAATATCAAATAGTTCCTAGAATTTAATGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAATACAGGGATAAAAATATCAAATAGTTCCTAGAATTTAATGTA  1037

seq1  AATGAGTACACAGCATACCCAAACTTTTTGGAGACAAAGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTACACAGCATACCCAAACTTTTTGGAGACAAAGAATTC  1081