BAC Information

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BAC

Clone NameB6Ng01-124P24
Chromosome1 (Build37)
Map Location 79,980,776 - 80,097,466
singlet/doubletdoublet
Overlap geneLOC100039325
Upstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064
Downstream geneA830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124P24.bB6Ng01-124P24.g
ACCDH927759DH927760
length763893
definitionDH927759|Mus musculus domesticus DNA, BAC clone: B6Ng01-124P24, 5' end.DH927760|Mus musculus domesticus DNA, BAC clone: B6Ng01-124P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,980,776 - 79,981,533)(80,096,580 - 80,097,466)
sequence
gaattcctcaaacgtccttggcacatcaccattaacactcagctgtatct
tcatggcattccaacctgaaagggctgatcaaacagcttttattttagta
ggtgagttttttttttaattaacaattatttaatggattaaccacttcct
tgctctttgagaaacaggtgcacatgaacgcaccatatctgagtctgaac
ttgaattaccttaagctagaaggttgtgcatatatgatttatttactaac
tgagctgtgtttgttttaaaaattgtaatattccaccacaccctctgggt
ttgtttctgcatcctaatggaccttagtgcacagtctgaaaacaatgaag
atgtgacttttgtttccttggtcatattatatgctgataaactccgaaac
caactatccaaaagacagaagccacatccatgagggagggtaaggtagga
gtcagaacaacttaccagtttagagaggaagttctgttgatgatttcacg
ggcctacacaagactaactttttgtgttactctgaagaacttttaaacta
caagacagctaggctagggggacagtcagtgggtaacgtgcttgcaatgt
aagcatgatgaatctggatttctcaggacccacataaaaactacttgtga
cctcatttgtgtagaaagggttgttagagatatgctcattcccaaggctg
gctgtctaactagtctgagcaaaaacaacctaacagctagatatcatgtt
cttaaagaaatta
gaattcctttgaatttctacaatggaataagttgataaaaaaacatttct
cctgtaaggtgaaactagatcttgagctagtacaggatttacagattatt
aatttaattgttaaaaatgactattcatggcaggaaacatagaaagacaa
atatatagatttcttaccttcctagagaactttgatttggggttagtgat
aattggacattttagattagtctggatgttttgccagatgtaaaagaaac
ttttttcatctcaagtgtgacacgaacacacttagttagatcctattggt
gttttaaaatgttcagacattgggctttttaaaacaatctttctttacct
tcccattttcatcctgttgcccctttccactgccagatggtctctttcgg
cctcatcgtaggaactaaaacccaaagcctggctgtagatcttgcttctg
tcttgatttattattacaggttaggctcatacctggagtgtctgttgtgt
actgggcatggctatgatagaagtgccaatgtattttgggatgatcagct
catagggagttattataaagatgtttttagctctcttgtgccatttatta
aactttcctgagactgtctaggtcagttacaaaccaggatttttactttc
tccaacttgtgggtgtaaggagttcagaattcaatgttctaagcagcttt
tcactcttggatcctcatggggataagaagggacgcagtgagggcagaga
ttccccacctgtagcgatcataagagagctatcctgtctacaaggacaga
gcctgtgtggcccagagattccaatttttaatattatcacctctgccttg
aacaatattggaaggaagttagacattcaaagcatccttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_79980776_79981533
seq2: B6Ng01-124P24.b_41_803

seq1  GAATTCCTCAAACGTCCTTGGCACATCACCATTAACACTCAGCTGTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAAACGTCCTTGGCACATCACCATTAACACTCAGCTGTATCT  50

seq1  TCATGGCATTCCAACCTGAAAGGGCTGATCAAACAGCTTTTATTTTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCATTCCAACCTGAAAGGGCTGATCAAACAGCTTTTATTTTAGTA  100

seq1  GGTGAGTTTTTTTTTTAATTAACAATTATTTAATGGATTAACCACTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTTTTTTTTTTAATTAACAATTATTTAATGGATTAACCACTTCCT  150

seq1  TGCTCTTTGAGAAACAGGTGCACATGAACGCACCATATCTGAGTCTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTGAGAAACAGGTGCACATGAACGCACCATATCTGAGTCTGAAC  200

seq1  TTGAATTACCTTAAGCTAGAAGGTTGTGCATATATGATTTATTTACTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTACCTTAAGCTAGAAGGTTGTGCATATATGATTTATTTACTAAC  250

seq1  TGAGCTGTGTTTGTTTTAAAAATTGTAATATTCCACCACACCCTCTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGTGTTTGTTTTAAAAATTGTAATATTCCACCACACCCTCTGGGT  300

seq1  TTGTTTCTGCATCCTAATGGACCTTAGTGCACAGTCTGAAAACAATGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTGCATCCTAATGGACCTTAGTGCACAGTCTGAAAACAATGAAG  350

seq1  ATGTGACTTTTGTTTCCTTGGTCATATTATATGCTGATAAACTCCGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACTTTTGTTTCCTTGGTCATATTATATGCTGATAAACTCCGAAAC  400

seq1  CAACTATCCAAAAGACAGAAGCCACATCCATGAGGGAGGGTAAGGTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATCCAAAAGACAGAAGCCACATCCATGAGGGAGGGTAAGGTAGGA  450

seq1  GTCAGAACAACTTACCAGTTTAGAGAGGAAGTTCTGTTGATGATTTCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAACAACTTACCAGTTTAGAGAGGAAGTTCTGTTGATGATTTCACG  500

seq1  GGCCTACACAAGACTAACTTTTTGTGTTACTCTGAAGAAC-TTTAAACTA  549
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGCCTACACAAGACTAACTTTTTGTGTTACTCTGAAGAACTTTTAAACTA  550

seq1  CAAGACAGCTAGGCTAGGGGGACAGTCAGTGGGTAACGTGCTTGCAATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGCTAGGCTAGGGGGACAGTCAGTGGGTAACGTGCTTGCAATGT  600

seq1  AAGCATGATGAATCTGGA-TTCCCAGGACCCACATAAAAACTACTTGTGA  648
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  AAGCATGATGAATCTGGATTTCTCAGGACCCACATAAAAACTACTTGTGA  650

seq1  CCTCA-TTGTGTAGAAAGGG-TGTTAGAGATAGGCTCATTCCCAAGGCTG  696
      ||||| |||||||||||||| ||||||||||| |||||||||||||||||
seq2  CCTCATTTGTGTAGAAAGGGTTGTTAGAGATATGCTCATTCCCAAGGCTG  700

seq1  GCTGTCTAACTAGTCTGAGCAAAAACAACCAAACAGCTAGATATCATG-T  745
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  GCTGTCTAACTAGTCTGAGCAAAAACAACCTAACAGCTAGATATCATGTT  750

seq1  CATAAAGAAATAA  758
      | ||||||||| |
seq2  CTTAAAGAAATTA  763

seq1: chr1_80096580_80097466
seq2: B6Ng01-124P24.g_69_961 (reverse)

seq1  TTTTAAACGATGCTTTGAATGTCTAAC-TCCCTCCAATATTTGTTCAAGG  49
       ||| || ||||||||||||||||||| ||| ||||||| ||||||||||
seq2  -TTTTAAGGATGCTTTGAATGTCTAACTTCCTTCCAATA-TTGTTCAAGG  48

seq1  CAGAGGTGATAATATTAAAAATTGGAAACTCTGGGCCACACAGGCTCTGT  99
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGAGGTGATAATATTAAAAATTGGAATCTCTGGGCCACACAGGCTCTGT  98

seq1  CCTTGTAGACAGGATTAGCTCTCTTATGATCGCTACAGGTGGGGAATCTC  149
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTTGTAGACAGGA-TAGCTCTCTTATGATCGCTACAGGTGGGGAATCTC  147

seq1  TGCCCTCACTGCGTCCCTTC-TAT-CCCATGAGGATCCAAGAGTGAAAAG  197
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  TGCCCTCACTGCGTCCCTTCTTATCCCCATGAGGATCCAAGAGTGAAAAG  197

seq1  CTGCCTAGAACATTG-ATTCTGAACTCCTTACACCCACAAGTTGGAG-AA  245
      |||| |||||||||| ||||||||||||||||||||||||||||||| ||
seq2  CTGCTTAGAACATTGAATTCTGAACTCCTTACACCCACAAGTTGGAGAAA  247

seq1  GT-AAAATCCTGGTTTGTAACTGACCTAGACAGTCTCAGGAAAGTTTAAT  294
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATCCTGGTTTGTAACTGACCTAGACAGTCTCAGGAAAGTTTAAT  297

seq1  -AATGGCACAAGAGAGCT-AAAACATC-TTATAATAACTCCCTATGAGCT  341
       ||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  AAATGGCACAAGAGAGCTAAAAACATCTTTATAATAACTCCCTATGAGCT  347

seq1  GATCATCCCAAAATACATTGGCACTTCTATCATAGCCATGCCCAGTACAC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATCCCAAAATACATTGGCACTTCTATCATAGCCATGCCCAGTACAC  397

seq1  AACAGACACTCCAGGTATGAGCCTAACCTGTAATAATAAATCAAGACAGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACACTCCAGGTATGAGCCTAACCTGTAATAATAAATCAAGACAGA  447

seq1  AGCAAGATCTACAGCCAGGCTTTGGGTTTTAGTTCCTACGATGAGGCCGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATCTACAGCCAGGCTTTGGGTTTTAGTTCCTACGATGAGGCCGA  497

seq1  AAGAGACCATCTGGCAGTGGAAAGGGGCAACAGGATGAAAATGGGAAGGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACCATCTGGCAGTGGAAAGGGGCAACAGGATGAAAATGGGAAGGT  547

seq1  AAAGAAAGATTGTTTTAAAAAGCCCAATGTCTGAACATTTTAAAACACCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGATTGTTTTAAAAAGCCCAATGTCTGAACATTTTAAAACACCA  597

seq1  ATAGGATCTAACTAAGTGTGTTCGTGTCACACTTGAGATGAAAAAAGTTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATCTAACTAAGTGTGTTCGTGTCACACTTGAGATGAAAAAAGTTT  647

seq1  CTTTTACATCTGGCAAAACATCCAGACTAATCTAAAATGTCCAATTATCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACATCTGGCAAAACATCCAGACTAATCTAAAATGTCCAATTATCA  697

seq1  CTAACCCCAAATCAAAGTTCTCTAGGAAGGTAAGAAATCTATATATTTGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCCAAATCAAAGTTCTCTAGGAAGGTAAGAAATCTATATATTTGT  747

seq1  CTTTCTATGTTTCCTGCCATGAATAGTCATTTTTAACAATTAAATTAATA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATGTTTCCTGCCATGAATAGTCATTTTTAACAATTAAATTAATA  797

seq1  ATCTGTAAATCCTGTACTAGCTCAAGATCTAGTTTCACCTTACAGGAGAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAAATCCTGTACTAGCTCAAGATCTAGTTTCACCTTACAGGAGAA  847

seq1  ATGTTTTTTTATCAACTTATTCCATTGTAGAAATTCAAAGGAATTC  887
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTTTATCAACTTATTCCATTGTAGAAATTCAAAGGAATTC  893