BAC Information

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BAC

Clone NameB6Ng01-125B11
Chromosome1 (Build37)
Map Location 161,541,642 - 161,648,106
singlet/doubletdoublet
Overlap geneTnr
Upstream geneAstn1, Pappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484
Downstream gene4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125B11.bB6Ng01-125B11.g
ACCDH927827DH927828
length1,1461,168
definitionDH927827|Mus musculus domesticus DNA, BAC clone: B6Ng01-125B11, 5' end.DH927828|Mus musculus domesticus DNA, BAC clone: B6Ng01-125B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,541,642 - 161,543,006)(161,646,925 - 161,648,106)
sequence
gaattctctacccacaggtttttgcctacttttctgttagtgttcctttc
tgctaattggcaggaattatttattaatgcagatgtttgcttcttactgc
ttttataaattgaaaaattcattgctgtgctcctgacctctttgtgaatt
tcactcatcatggccaccagtgagtagcaatttttaattttgatgtaatt
gaatctattaatttttcatcttgttccttgtcccactcaaatcttgttca
aaattcttttctctgactcagataaataggctcttattcagaaatataaa
gtaatctgtttacttatgggcactaaatgtctctagccttttagtattca
gctctagcatcctgagaaagttctgttcttatattttaaatcatttttaa
ataaagatatgtatgcttctgcaaatacttttaccatattaaaatattag
tacaattattctttcatccatcatcagtgacttgaagcagatcctctgat
gtttaaatactttcttcatgtgttaactcttacttggtggtaatctttca
attcatcattttatttcaataactactatttctcctagcagttttgtttc
tatatgtgtcaaacataatgaatctgtttggatttgtccctgccattctc
tttactttacttgaggctcacaataatatcagctttctgaaataaaattg
gctatctcccctgttctactttccagaacaacttttacaatgcagacatt
acttataacatgaacatttaccttcaagtctaggactgaagtgcctcaat
tatctctttcagtatctgaaacacacacacacacacacatccagaaagag
gaagagagagagatcagttctatctagtgttttcaactttaatttgaaac
atcttatttttcttattcatatattatgcatacacatttgcttggatgtt
ctttaaggaaatatctctagttcctcctctggatcggatctctttattgc
actcaattttctctgcctgctgaacagccctttccatgactgggtcttca
atactaagtctcacttcttcttttgatgctgagggacttaaattgatggt
aaagatgggcgaggtcttatgagaaaggaagggtaatatggtgtgg
gaattcctagctcatcccacttcccccattaagagataccactgtccaaa
gagaccaatggaaaacattagctgtcttgtggatagcaggattcttggtc
ccccaggtagttgctggactccctaaaaatgctcagcagagtgttagccc
agggataccagctacagctccctcaagttctaacactagtatctcttgct
ctgtgcactcaactgacattcctacaagtattgtgcaagtctcctgcctg
tttccattttatgaggtcatacttgtcctccttagaggagtccataggtc
tgtcactcctcccacacaatcttgagcctacccgatctttatttattttt
ttcttaattaattgctagctcactccaaatttctgcatgcctagggaagg
aaaagtccaactgggagttggtaataaggaaagatcttcatgggaaacga
gaatggggtgatacgttcagtatgagtggatgctctgtgacatttacata
gagaaatgagaagtgatctgagcggaaggagggtgtgtacaaagacacca
gagtgcgactggacagagtgactctaatgagaagccaggcggtgaggtta
agacttagctgggaggttgacggggaactcccacacagcaaggatcccag
ccaggcactgattcatgttcacgacagaccaagtttgctgtacagcagtt
ataccagatggaagctctgcctaggataccctggccctctcccaggagag
agtctcaacctcccacctgtgtttttcacagaggaatagatgaatcgggc
agattatggactagaataagctgtgccctgctgccgctctatctcgctct
ttctgttctatccagcagcagcatgaggaggcgtctccccgaatcgcttc
cagagattgcatgtgttattgatttactgatgcccagtggctgtaatgag
aaagacactagcatgagacgatactgaaatcagactatttccccatgcca
atctgcctccatgcctgcctctccattcttacttttctgctttagatgaa
attggtgtatgcctttcctccccttaggaccacttttcttgcccttctcc
tggctatttgaaagtgctcaacccatcattttactctcagctaaagaaaa
aaccaacaaacttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_161541642_161543006
seq2: B6Ng01-125B11.b_49_1194

seq1  GAATTCTCTACCCACAGGTTTTTGCCTACTTTTCTGTTAGTGTTCCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACCCACAGGTTTTTGCCTACTTTTCTGTTAGTGTTCCTTTC  50

seq1  TGCTAATTGGCAGGAATTATTTATTAATGCAGATGTTTGCTTCTTACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATTGGCAGGAATTATTTATTAATGCAGATGTTTGCTTCTTACTGC  100

seq1  TTTTATAAATTGAAAAATTCATTGCTGTGCTCCTGACCTCTTTGTGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAATTGAAAAATTCATTGCTGTGCTCCTGACCTCTTTGTGAATT  150

seq1  TCACTCATCATGGCCACCAGTGAGTAGCAATTTTTAATTTTGATGTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCATCATGGCCACCAGTGAGTAGCAATTTTTAATTTTGATGTAATT  200

seq1  GAATCTATTAATTTTTCATCTTGTTCCTTGTCCCACTCAAATCTTGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTATTAATTTTTCATCTTGTTCCTTGTCCCACTCAAATCTTGTTCA  250

seq1  AAATTCTTTTCTCTGACTCAGATAAATAGGCTCTTATTCAGAAATATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTTTCTCTGACTCAGATAAATAGGCTCTTATTCAGAAATATAAA  300

seq1  GTAATCTGTTTACTTATGGGCACTAAATGTCTCTAGCCTTTTAGTATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTGTTTACTTATGGGCACTAAATGTCTCTAGCCTTTTAGTATTCA  350

seq1  GCTCTAGCATCCTGAGAAAGTTCTGTTCTTATATTTTAAATCATTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGCATCCTGAGAAAGTTCTGTTCTTATATTTTAAATCATTTTTAA  400

seq1  ATAAAGATATGTATGCTTCTGCAAATACTTTTACCATATTAAAATATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATATGTATGCTTCTGCAAATACTTTTACCATATTAAAATATTAG  450

seq1  TACAATTATTCTTTCATCCATCATCAGTGACTTGAAGCAGATCCTCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTATTCTTTCATCCATCATCAGTGACTTGAAGCAGATCCTCTGAT  500

seq1  GTTTAAATACTTTCTTCATGTGTTAACTCTTACTTGGTGGTAATCTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATACTTTCTTCATGTGTTAACTCTTACTTGGTGGTAATCTTTCA  550

seq1  ATTCATCATTTTATTTCAATAACTACTATTTCTCCTAGCAGTTTTGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCATTTTATTTCAATAACTACTATTTCTCCTAGCAGTTTTGTTTC  600

seq1  TATATGTGTCAAACATAATGAATCTGTTTGGATTTGTCCCTGCCATTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGTCAAACATAATGAATCTGTTTGGATTTGTCCCTGCCATTCTC  650

seq1  TTTACTTTACTTGAGGCTCACAATAATATCAGCTTTCTGAAATAAAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTACTTGAGGCTCACAATAATATCAGCTTTCTGAAATAAAATTG  700

seq1  GCTATCTCCCCTGTTCTACTTTCCAGAACAACTTTTACAATGCAGACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTCCCCTGTTCTACTTTCCAGAACAACTTTTACAATGCAGACATT  750

seq1  ACTTATAACATGAACATTTACCTTCAAGTCTAGGACTGAAGTGCCCCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACTTATAACATGAACATTTACCTTCAAGTCTAGGACTGAAGTGCCTCAAT  800

seq1  TATCTCTTTCAGTATCTGAAACACACACACACACACACATCCAGAAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTTCAGTATCTGAAACACACACACACACACACATCCAGAAAGAG  850

seq1  GAAGAGAGAGAGATCAGTTCTATCTAGTGTTTTCAACTTT-ATTTGAAAC  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAGAGAGAGAGATCAGTTCTATCTAGTGTTTTCAACTTTAATTTGAAAC  900

seq1  ATCTTATTTTTCTTATACATATATTATGCATACACATTTGCTTGGATGTT  949
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  ATCTTATTTTTCTTATTCATATATTATGCATACACATTTGCTTGGATG-T  949

seq1  TCTTCTTAAGGAAAATATTCTCTAGTTCCT-CTCTGGATCGGATCCTCTT  998
      |||  |||||| ||||| |||||||||||| ||||||||||||| |||||
seq2  TCT--TTAAGG-AAATA-TCTCTAGTTCCTCCTCTGGATCGGAT-CTCTT  994

seq1  TATTTGCCACTCAATTTTCTCTGCCTGGCTG-ACAGCCCTTTTCCAATGA  1047
      ||||   ||||||||||||||||||| |||| ||||||||||  | ||||
seq2  TATT--GCACTCAATTTTCTCTGCCT-GCTGAACAGCCCTTT--CCATGA  1039

seq1  CTGGGTCTTTCAATACTAAGGGTCTCAACTTCCTCTTTTGATTGCTGAGG  1097
      ||||||| |||||||||||  ||||| ||||| |||||||| ||||||  
seq2  CTGGGTC-TTCAATACTAA--GTCTC-ACTTCTTCTTTTGA-TGCTGA--  1082

seq1  GGGACTTAGAAATGTGATTGGGAAAAGATGGGGCAGAGGTCTTATTGAGA  1147
      |||||||  |||| ||||  || |||||||||   ||||||||| |||||
seq2  GGGACTT--AAAT-TGAT--GGTAAAGATGGG--CGAGGTCTTA-TGAGA  1124

seq1  GAGGAGGGGTAATAATGGGGTGGGGGAGGGGTAGTAATGGGGCAAGGGTG  1197
       |||| ||||||| |||| ||||                           
seq2  AAGGAAGGGTAAT-ATGGTGTGG---------------------------  1146

seq1  GAGTAAAGGTGGGGAAGGGTATAGAGGAGGTGTCCTTGCTTTCTGGTGTC  1247
                                                        
seq2  --------------------------------------------------  1146

seq1  AGGTCTCTTGCAGCTTTCTTAGTTTGTCACATAATCTTAGCTTCCTTGTG  1297
                                                        
seq2  --------------------------------------------------  1146

seq1  GCTAAAGTTGTGGAGCAATAATACAGTATAGGCATTACAGTCACTGTGAG  1347
                                                        
seq2  --------------------------------------------------  1146

seq1  TACTTAGCTATGGTGTGG  1365
                        
seq2  ------------------  1146

seq1: chr1_161646925_161648106
seq2: B6Ng01-125B11.g_70_1237 (reverse)

seq1  AAAAAAAGTTTTGTTTTGTTTTTTTCTTTTTTAGCTTGGAGTAAAAATGA  50
      ||||||||||   | ||| |||||||   |||||||  |||| |||||||
seq2  AAAAAAAGTT---TGTTGGTTTTTTC---TTTAGCTGAGAGT-AAAATGA  43

seq1  TGGG-TGAGCCACTGTCAAATAGCCAGGAGAAGGGCAGAAAAAGTGGTCC  99
      |||| |||| |||| ||||||||||||||||||||||  |||||||||||
seq2  TGGGTTGAG-CACTTTCAAATAGCCAGGAGAAGGGCAAGAAAAGTGGTCC  92

seq1  TAAGGGGAGGAAAAGCCATACA-CAATTTCATCTTAAAAGGCAGAAAAGT  148
      |||||||||| |||| |||||| |||||||||||   || ||||||||||
seq2  TAAGGGGAGG-AAAGGCATACACCAATTTCATCT---AAAGCAGAAAAGT  138

seq1  AAGAAAGGGAGAGGCAGGCATGGAGGCAAGATTGGCATGGGGAAATAGTC  198
      ||| || |||||||||||||||||||| ||||||||||||||||||||||
seq2  AAG-AATGGAGAGGCAGGCATGGAGGC-AGATTGGCATGGGGAAATAGTC  186

seq1  TGATTTCAGTATCGTTCTCATGCTAGTGTCTTTCTCATTACAGCCAACTG  248
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  TGATTTCAGTATCG-TCTCATGCTAGTGTCTTTCTCATTACAGCC-ACTG  234

seq1  GGCATCAGTAAATCAATAACACATGCAATCTCTGGAAGCGATTCGGGGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGTAAATCAATAACACATGCAATCTCTGGAAGCGATTCGGGGAG  284

seq1  ACGCCTCCTCATGCTGCTGCTGGATAGAACAGATAGAGCGAGATAGAGCG  348
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACGCCTCCTCATGCTGCTGCTGGATAGAACAGAAAGAGCGAGATAGAGCG  334

seq1  GCAGCAGGGCACAGCTTATTCTAGTCCATAATCTGCCCGATTCATCTATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGGGCACAGCTTATTCTAGTCCATAATCTGCCCGATTCATCTATT  384

seq1  CCTCTGTGAAAAACACAGGTGGGAGGTTGAGACTCTCTCCTGGGAGAGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGAAAAACACAGGTGGGAGGTTGAGACTCTCTCCTGGGAGAGGG  434

seq1  CCAGGGTATCCTAGGCAGAGCTTCCATCTGGTATAACTGCTGTACAGCAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTATCCTAGGCAGAGCTTCCATCTGGTATAACTGCTGTACAGCAA  484

seq1  ACTTGGTCTGTCGTGAACATGAATCAGTGCCTGGCTGGGATCCTTGCTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTCTGTCGTGAACATGAATCAGTGCCTGGCTGGGATCCTTGCTGT  534

seq1  GTGGGAGTTCCCCGTCAACCTCCCAGCTAAGTCTTAACCTCACCGCCTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGTTCCCCGTCAACCTCCCAGCTAAGTCTTAACCTCACCGCCTGG  584

seq1  CTTCTCATTAGAGTCACTCTGTCCAGTCGCACTCTGGTGTCTTTGTACAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATTAGAGTCACTCTGTCCAGTCGCACTCTGGTGTCTTTGTACAC  634

seq1  ACCCTCCTTCCGCTCAGATCACTTCTCATTTCTCTATGTAAATGTCACAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCTTCCGCTCAGATCACTTCTCATTTCTCTATGTAAATGTCACAG  684

seq1  AGCATCCACTCATACTGAACGTATCACCCCATTCTCGTTTCCCATGAAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCACTCATACTGAACGTATCACCCCATTCTCGTTTCCCATGAAGA  734

seq1  TCTTTCCTTATTACCAACTCCCAGTTGGACTTTTCCTTCCCTAGGCATGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTATTACCAACTCCCAGTTGGACTTTTCCTTCCCTAGGCATGC  784

seq1  AGAAATTTGGAGTGAGCTAGCAATTAATTAAGAAAAAAATAAATAAAGAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTGGAGTGAGCTAGCAATTAATTAAGAAAAAAATAAATAAAGAT  834

seq1  CGGGTAGGCTCAAGATTGTGTGGGAGGAGTGACAGACCTATGGACTCCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTAGGCTCAAGATTGTGTGGGAGGAGTGACAGACCTATGGACTCCTC  884

seq1  TAAGGAGGACAAGTATGACCTCATAAAATGGAAACAGGCAGGAGACTTGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGGACAAGTATGACCTCATAAAATGGAAACAGGCAGGAGACTTGC  934

seq1  ACAATACTTGTAGGAATGTCAGTTGAGTGCACAGAGCAAGAGATACTAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTTGTAGGAATGTCAGTTGAGTGCACAGAGCAAGAGATACTAGT  984

seq1  GTTAGAACTTGAGGGAGCTGTAGCTGGTATCCCTGGGCTAACACTCTGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAACTTGAGGGAGCTGTAGCTGGTATCCCTGGGCTAACACTCTGCT  1034

seq1  GAGCATTTTTAGGGAGTCCAGCAACTACCTGGGGGACCAAGAATCCTGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTTTAGGGAGTCCAGCAACTACCTGGGGGACCAAGAATCCTGCT  1084

seq1  ATCCACAAGACAGCTAATGTTTTCCATTGGTCTCTTTGGACAGTGGTATC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAAGACAGCTAATGTTTTCCATTGGTCTCTTTGGACAGTGGTATC  1134

seq1  TCTTAATGGGGGAAGTGGGATGAGCTAGGAATTC  1182
      ||||||||||||||||||||||||||||||||||
seq2  TCTTAATGGGGGAAGTGGGATGAGCTAGGAATTC  1168