BAC Information

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BAC

Clone NameB6Ng01-125C19
Chromosome1 (Build37)
Map Location 176,441,226 - 176,604,280
singlet/doubletdoublet
Overlap geneFmn2
Upstream geneBC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220
Downstream geneGrem2, Rgs7, Fh1, Kmo, Opn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125C19.bB6Ng01-125C19.g
ACCDH927885DH927886
length1,1371,090
definitionDH927885|Mus musculus domesticus DNA, BAC clone: B6Ng01-125C19, 5' end.DH927886|Mus musculus domesticus DNA, BAC clone: B6Ng01-125C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,441,226 - 176,442,370)(176,603,176 - 176,604,280)
sequence
gaattcagcattaaggattgttaaggagaaataaagttttatctgtgtaa
tcttaatagttgatatgaattagccaaatgtaaaaactttatgatgcttt
taccttttatttaatctctgtttctgagtgtttatatgtgaataggtagg
tgtgtacccttgcagatcagaagctggtgttggattccctggagctggaa
tcacaggcagttgtgagctgccaaatgtgggttctgggaaatgaacttta
ttcctctgcaagagaacttaactgctgacttatccccccagttcttacaa
ggctcaaaaaatattaaaatataaacaatgcaaaatataacttctattca
attagaataaatcaaagcagtcactgaaagctattagatcaaataacact
tattggatgccacaagagggtgccaactgtggcaggcagttattgtccct
ttgacacctgttccactgttggtgagaaagagaaaatgaatggcttactc
ctttacaaagatgagcttggaagtgttagctgattgggaaaatgtctgct
gttgctccgtggttccatcaggttacagcatactgtggaatccctgggca
ctttgttactggatgctagagcagggctgggctaactgcagatcttgtat
attcagcaagaatgagattcacagcttgagaaaatctatgtcttagtgtg
ttagagtgctatgctgagaatgttcacactgcccaaattgggtctcttta
tacatgagggagaagggttctttgtgtcatttacatcattgctttaaggg
accaggaaggaagcaaatatttatcagtcattgaatgcaggactatggca
gaagtagtcaaagcttccctttgcacgtttttccccttttcctgtttctt
ccctctctcctcccttcccctctctgcccacttccctcctcttcttttct
ccctccattcctccttctctcctcccttctttcttcctctttcttccttc
tcatctcttctaatgatctgggtttcagtaaacaacaagcaaaggcaaga
ctaaggatgttgcgagatggtaacattgttttgcatgtatgaagtctgta
atttgaactcaggcacacactctgctccctctaggac
gaattcattaatgaacacacaaactcacacacacacacacacacacacac
acacacacacacacacacacacagaaacactatattatgatgttaaaacc
tgcataatattcatatatatttgttcaagtctggatatattgcaattgtc
ctattgtagatttattaaaattatatactacattccatattagtttaact
aattgaaggaaagattcagttaaagacatccccgcctgaaaactatcatt
taagtagatatatctaaaggctatgttttaatatgtattttaaaaatagt
gtatgtagtgtacatgtatggctgcattcttattcacatgtgtttgggca
catgtgtccatacaagtgtatacatgcatatatgcatgcaagcttatata
caggtgagcgatcatgcatgaggaagcccaaaatcaatgacaagagtgct
ctctgaccagtctccactctattctttgaggcaggttctctcaattgaac
ctacaggtctctgggatgactaactggctactctaactagccagcttgct
cttagctctagcaatctatttctctgcctctgggcactgaaattacacgt
ggttgctgtgcacaccctgcatttacacaggttttagagaactctggtcc
tcacatttacacaatagatatgtctatccactcagccaactccttggctg
ccatgtcttatttttatcttcaaacaaaccagtggactcaggagtgatct
gcattgctgcattatccaattctaaataaaaataataatcaaacgaatgt
tcaagaaacagggaactatggacttattcaaagacagaacgcagtcagtc
gtaggtattgtgtatgaaaagaatttttaaacatctcaaaggaagagatg
gaaaaaattgatgtgcagtcaaatgacagcaccaataagaaacagaaatc
ttaaggagaaatgaaaagagatcctggtgctgaaaattgagagaagagag
gagcctccaccagaggtatttcaagaaggccagatgggagtggcagaaga
aacacccacaggcctggttgggggtttgaaggtcacgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_176441226_176442370
seq2: B6Ng01-125C19.b_51_1187

seq1  GAATTCAGCATTAAGGATTGTTAAGGAGAAATAAAGTTTTATCTGTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATTAAGGATTGTTAAGGAGAAATAAAGTTTTATCTGTGTAA  50

seq1  TCTTAATAGTTGATATGAATTAGCCAAATGTAAAAACTTTATGATGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATAGTTGATATGAATTAGCCAAATGTAAAAACTTTATGATGCTTT  100

seq1  TACCTTTTATTTAATCTCTGTTTCTGAGTGTTTATATGTGAATAGGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTATTTAATCTCTGTTTCTGAGTGTTTATATGTGAATAGGTAGG  150

seq1  TGTGTACCCTTGCAGATCAGAAGCTGGTGTTGGATTCCCTGGAGCTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACCCTTGCAGATCAGAAGCTGGTGTTGGATTCCCTGGAGCTGGAA  200

seq1  TCACAGGCAGTTGTGAGCTGCCAAATGTGGGTTCTGGGAAATGAACTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGCAGTTGTGAGCTGCCAAATGTGGGTTCTGGGAAATGAACTTTA  250

seq1  TTCCTCTGCAAGAGAACTTAACTGCTGACTTATCCCCCCAGTTCTTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGCAAGAGAACTTAACTGCTGACTTATCCCCCCAGTTCTTACAA  300

seq1  GGCTCAAAAAATATTAAAATATAAACAATGCAAAATATAACTTCTATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAAAAATATTAAAATATAAACAATGCAAAATATAACTTCTATTCA  350

seq1  ATTAGAATAAATCAAAGCAGTCACTGAAAGCTATTAGATCAAATAACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATAAATCAAAGCAGTCACTGAAAGCTATTAGATCAAATAACACT  400

seq1  TATTGGATGCCACAAGAGGGTGCCAACTGTGGCAGGCAGTTATTGTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATGCCACAAGAGGGTGCCAACTGTGGCAGGCAGTTATTGTCCCT  450

seq1  TTGACACCTGTTCCACTGTTGGTGAGAAAGAGAAAATGAATGGCTTACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACCTGTTCCACTGTTGGTGAGAAAGAGAAAATGAATGGCTTACTC  500

seq1  CTTTACAAAGATGAGCTTGGAAGTGTTAGCTGATTGGGAAAATGTCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAAAGATGAGCTTGGAAGTGTTAGCTGATTGGGAAAATGTCTGCT  550

seq1  GTTGCTCCGTGGTTCCATCAGGTTACAGCATACTGTGGAATCCCTGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCCGTGGTTCCATCAGGTTACAGCATACTGTGGAATCCCTGGGCA  600

seq1  CTTTGTTACTGGATGCTAGAGCAGGGCTGGGCTAACTGCAGATCTTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTACTGGATGCTAGAGCAGGGCTGGGCTAACTGCAGATCTTGTAT  650

seq1  ATTCAGCAAGAATGAGATTCACAGCTTGAGAAAATCTATGTCTTAGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCAAGAATGAGATTCACAGCTTGAGAAAATCTATGTCTTAGTGTG  700

seq1  TTAGAGTGCTATGCTGAGAATGTTCACACTG-CCAAATTGGGTCTCTTTA  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTAGAGTGCTATGCTGAGAATGTTCACACTGCCCAAATTGGGTCTCTTTA  750

seq1  TACATGAGGGAGAAGGGTTCTTTGTGTCATTTACATCATTGCTTTAAGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAGGGAGAAGGGTTCTTTGTGTCATTTACATCATTGCTTTAAGGG  800

seq1  ACCAGGAAGGAAGCAAATATTTATCAGTCATTGAATGCAGGACTATGGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAGGAAGCAAATATTTATCAGTCATTGAATGCAGGACTATGGCA  850

seq1  GAAGTAGTCAAAGCTTCCCTTTGCACGTTTTTCCCCTTTTCCTGTTTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGTCAAAGCTTCCCTTTGCACGTTTTTCCCCTTTTCCTGTTTCTT  900

seq1  CCCTCTCTTCCTCCCTTCCCCTCTCTTGCCCACTTCCCTCCCTCTTCCTT  949
      ||||||| ||||||||||||||||| ||||||||||||| |||||| |||
seq2  CCCTCTC-TCCTCCCTTCCCCTCTC-TGCCCACTTCCCT-CCTCTT-CTT  946

seq1  TTCTCCCTCCATTCCTCCTTCTCTCCCTCCCTTCTTTCCTTCCTCTTTCT  999
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  TTCTCCCTCCATTCCTCCTTCTCT-CCTCCCTTCTTT-CTTCCTCTTTCT  994

seq1  TCCTTCTCATCTCTTCCTAATGATCTGGTTTCTCAGTTAAACAAACAAAG  1049
      ||||||||||||||| |||||||||||| || |||| |||||||   |||
seq2  TCCTTCTCATCTCTT-CTAATGATCTGGGTT-TCAG-TAAACAA--CAAG  1039

seq1  CAAAGGCAGGACTAAGGATGTTGCGAGATGGTAACATTTGTTTTGCATGT  1099
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  CAAAGGCAAGACTAAGGATGTTGCGAGATGGTAACA-TTGTTTTGCATGT  1088

seq1  ATGAAGTCTGTAGTTTGACCTCAGG--CACACCCTGCT-CCTCTAGGAC  1145
      |||||||||||| ||||| ||||||  ||||| ||||| ||||||||||
seq2  ATGAAGTCTGTAATTTGAACTCAGGCACACACTCTGCTCCCTCTAGGAC  1137

seq1: chr1_176603176_176604280
seq2: B6Ng01-125C19.g_68_1157 (reverse)

seq1  AATCGGTTGACCTTCTAACACCCCCAAACCAAGGCTGTGGGTTGTTTCTT  50
      |||||  |||||||| ||   |||| ||||| | ||||||| ||||||||
seq2  AATCG--TGACCTTCAAA---CCCCCAACCAGGCCTGTGGG-TGTTTCTT  44

seq1  CTGCCAACTCCCATCTGCCTGTCTTTGAATACCTCTAGTGGAGGCTTCCT  100
      ||||| ||||||||||| |  ||||  ||||||||| |||||||| ||||
seq2  CTGCC-ACTCCCATCTGGCCTTCTTGAAATACCTCTGGTGGAGGC-TCCT  92

seq1  CTCTTCTCTTCACTTTTCAGCACCAGGATTCTCTTTTCATTTCTCTTTAA  150
      |||||||| ||| ||||||||||||||| |||||||||||||||| ||||
seq2  CTCTTCTC-TCAATTTTCAGCACCAGGA-TCTCTTTTCATTTCTCCTTAA  140

seq1  GATTTTCTGTTTCTTTATTGGTGCTGTCATTTTGACTGCACATCAATTTT  200
      || |||||||||| ||||||||||||||| |||||||||||||||| |||
seq2  GA-TTTCTGTTTC-TTATTGGTGCTGTCA-TTTGACTGCACATCAA-TTT  186

seq1  TTTCCATCTCTTTCTTTGAGATGTTTAAAAATTCTTTTCATACACAATAC  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCTCTTCCTTTGAGATGTTTAAAAATTCTTTTCATACACAATAC  236

seq1  CTAACGACTGACTGCGTTCTGTCTTTGAAT-AGTCCATAGTTCCCTGTTT  299
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CT-ACGACTGACTGCGTTCTGTCTTTGAATAAGTCCATAGTTCCCTGTTT  285

seq1  CTTGAACATTCGTTTGATTATTATTTTTATTTAGAATTGGATAATGCAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACATTCGTTTGATTATTATTTTTATTTAGAATTGGATAATGCAGC  335

seq1  AATGCAGATCACTCCTGGAGTCCACTGGTTTGTTTGAAGATAAAAATAAG  399
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATGCAGATCACTCCT-GAGTCCACTGGTTTGTTTGAAGATAAAAATAAG  384

seq1  ACATGGCAGCCAAGGAGTTGGCTGAGTGGATAGACATATCTATTGTGTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCAGCCAAGGAGTTGGCTGAGTGGATAGACATATCTATTGTGTAA  434

seq1  ATGTGAGGACCAGAGTTCTCTAAAACCTGTGTAAATGCAGGGTGTGCACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGGACCAGAGTTCTCTAAAACCTGTGTAAATGCAGGGTGTGCACA  484

seq1  GCAACCACGTGTAATTTCAGTGCCCAGAGGCAGAGAAATAGATTGCTAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCACGTGTAATTTCAGTGCCCAGAGGCAGAGAAATAGATTGCTAGA  534

seq1  GCTAAGAGCAAGCTGGCTAGTTAGAGTAGCCAGTTAGTCATCCCAGAGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAGCAAGCTGGCTAGTTAGAGTAGCCAGTTAGTCATCCCAGAGAC  584

seq1  CTGTAGGTTCAATTGAGAGAACCTGCCTCAAAGAATAGAGTGGAGACTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGTTCAATTGAGAGAACCTGCCTCAAAGAATAGAGTGGAGACTGG  634

seq1  TCAGAGAGCACTCTTGTCATTGATTTTGGGCTTCCTCATGCATGATCGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAGCACTCTTGTCATTGATTTTGGGCTTCCTCATGCATGATCGCT  684

seq1  CACCTGTATATAAGCTTGCATGCATATATGCATGTATACACTTGTATGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTATATAAGCTTGCATGCATATATGCATGTATACACTTGTATGGA  734

seq1  CACATGTGCCCAAACACATGTGAATAAGAATGCAGCCATACATGTACACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGCCCAAACACATGTGAATAAGAATGCAGCCATACATGTACACT  784

seq1  ACATACACTATTTTTAAAATACATATTAAAACATAGCCTTTAGATATATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACTATTTTTAAAATACATATTAAAACATAGCCTTTAGATATATC  834

seq1  TACTTAAATGATAGTTTTCAGGCGGGGATGTCTTTAACTGAATCTTTCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAATGATAGTTTTCAGGCGGGGATGTCTTTAACTGAATCTTTCCT  884

seq1  TCAATTAGTTAAACTAATATGGAATGTAGTATATAATTTTAATAAATCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAGTTAAACTAATATGGAATGTAGTATATAATTTTAATAAATCTA  934

seq1  CAATAGGACAATTGCAATATATCCAGACTTGAACAAATATATATGAATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGACAATTGCAATATATCCAGACTTGAACAAATATATATGAATAT  984

seq1  TATGCAGGTTTTAACATCATAATATAGTGTTTCTGTGTGTGTGTGTGTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGGTTTTAACATCATAATATAGTGTTTCTGTGTGTGTGTGTGTGT  1034

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTTTGTGTGTTCATTAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTTTGTGTGTTCATTAAT  1084

seq1  GAATTC  1105
      ||||||
seq2  GAATTC  1090