BAC Information

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BAC

Clone NameB6Ng01-125G02
Chromosome1 (Build37)
Map Location 129,970,267 - 130,105,168
singlet/doubletdoublet
Overlap geneZranb3, EG666784, R3hdm1, LOC667109, LOC100042111
Upstream geneMgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, LOC666778, LOC100042670
Downstream geneUbxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125G02.bB6Ng01-125G02.g
ACCDH928031DH928032
length1,1281,087
definitionDH928031|Mus musculus domesticus DNA, BAC clone: B6Ng01-125G02, 5' end.DH928032|Mus musculus domesticus DNA, BAC clone: B6Ng01-125G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,970,267 - 129,971,398)(130,104,072 - 130,105,168)
sequence
gaattctctctacaggtgggctttgaggtttcagatgctcaagccaggcc
cagtgtcactctctcttcctgctgatccagaagtagaactctcagatatc
tctccagcaccatgtctgcctgcatgctgccatgcttcccaccatgatga
caatgaactataaaccagacccaattaaatgtttccctttataagagctg
ctgtggtcatggtatctcttcacagcagtaaaaacccaaactcagacatg
tacatacatacagaactatgtatactgagacaaaattaaataataaaatg
tcttttaatgaaaagaacttgcagttgtaccaaaagatatgcttgggaat
catgtagtaactgcaggcattgattttctgtttgattccctaacagtatg
taaactttggaattctgcaatcctgttatttgaaaactgactgcaaatac
agttctgagaacacatttgtattctctaggtgtaatagcatcactattta
tttggtgtcgggacttcattttccttgaacacgagccgtggctttgtgtc
ttgggacaatcctccttctgtggttgcttgcattttgcttgactttttgc
agctgtaagcctgctgccttgccaaacaggagtcattatctccttccatg
tgaacacttcaccagagcatagttcacttcagtagactaggcagtcatgg
cttggttcactaaaactctcagacaccaaccttccatccagttgccaagg
ttcccagatgaatttcaagagcattttcaactagtgtgacacttatacag
gtacaatagactcccctttatcttcaagaatacattccagggggctggag
agatggctcagtggttaaagagcacggactgctctcccagaagtcctgag
ttcaattcccagcaaccacatgtggctcataaccatctgcaatgagatct
gatgccctcttttggtgtgtctggaggacagtaataatgcactcatatac
ataaaataaataataaaaaaaaagatacattccaggaatcccagtgatgc
agaaacctcacccaatacaaatactagaataagcatattcctctatacaa
aaacactaaaataagctaaatttacatg
gaattcttacacatatggaggtgttaatatctgtgatttgccttaaagaa
aaagaatattgcaacaaaatgtaaaggtcgagaataaggggaaaattact
atgtttgaggaacagaaagtagtttgcagtagttagatagatatagtgta
tggactgaaaagtccaagataaaggtagtagagattcccagtgaagaacc
agttttatgaggccaggcgaaaactaataggaatgcccagatttaaaaaa
cagcaggtggtactgtcctgaaagagggtttattttgcttcatggattca
gaggttctagtccatcatggaaggaagggcagagtggagtatctatcaca
catggtggcccaggagcagagaaaaagaatgcctgtgttagcaggcctcc
tttttcccaatcctacctgcaaggacctgcaagtacacaccgaggtggag
catgaaaggaggaggtaggagtacttcattaattcctacccagtcaagtt
gacaatcaagtttaagcttcacacttttctccttctgagatcaaagaaga
cccagcatgaaagggatggtatggttatggaccacaccacctttggattg
aaatgaactatttaccccactgactcttgagtctacatttttacattaat
atttcattcacaagcagcatcaattaattgtgactgtccttgaccaacag
tggatttattaaaaataagaatgacaagtactttcaagaaataatgtttt
ccctaagttgctcccttgtgaaaattctgttcattatcttgtagaatatg
cccccaaactgtactgataacatgaacttgctcttgctaattcatccttt
cgtgatttgtgtatactgttaaataaaacagaaatgatctatcatttaga
ctaaagaaagaaattttaacgctcatcattgtcctttcagaaaaaaaaca
ttttgtataactattattagctaaaatgtacgtattcatattcatactta
aaacaatggtgaaaaactcagagtagaaacaattaaatatttttctacac
aaatcagacagaggattgctggaatgcagtttcttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_129970267_129971398
seq2: B6Ng01-125G02.b_50_1177

seq1  GAATTCTCTCTACAGGTGGGCTTTGAGGTTTCAGATGCTCAAGCCAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTACAGGTGGGCTTTGAGGTTTCAGATGCTCAAGCCAGGCC  50

seq1  CAGTGTCACTCTCTCTTCCTGCTGATCCAGAAGTAGAACTCTCAGATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCACTCTCTCTTCCTGCTGATCCAGAAGTAGAACTCTCAGATATC  100

seq1  TCTCCAGCACCATGTCTGCCTGCATGCTGCCATGCTTCCCACCATGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCACCATGTCTGCCTGCATGCTGCCATGCTTCCCACCATGATGA  150

seq1  CAATGAACTATAAACCAGACCCAATTAAATGTTTCCCTTTATAAGAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAACTATAAACCAGACCCAATTAAATGTTTCCCTTTATAAGAGCTG  200

seq1  CTGTGGTCATGGTATCTCTTCACAGCAGTAAAAACCCAAACTCAGACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTCATGGTATCTCTTCACAGCAGTAAAAACCCAAACTCAGACATG  250

seq1  TACATACATACAGAACTATGTATACTGAGACAAAATTAAATAATAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATACAGAACTATGTATACTGAGACAAAATTAAATAATAAAATG  300

seq1  TCTTTTAATGAAAAGAACTTGCAGTTGTACCAAAAGATATGCTTGGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAATGAAAAGAACTTGCAGTTGTACCAAAAGATATGCTTGGGAAT  350

seq1  CATGTAGTAACTGCAGGCATTGATTTTCTGTTTGATTCCCTAACAGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGTAACTGCAGGCATTGATTTTCTGTTTGATTCCCTAACAGTATG  400

seq1  TAAACTTTGGAATTCTGCAATCCTGTTATTTGAAAACTGACTGCAAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTGGAATTCTGCAATCCTGTTATTTGAAAACTGACTGCAAATAC  450

seq1  AGTTCTGAGAACACATTTGTATTCTCTAGGTGTAATAGCATCACTATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAGAACACATTTGTATTCTCTAGGTGTAATAGCATCACTATTTA  500

seq1  TTTGGTGTCGGGACTTCATTTTCCTTGAACACGAGCCGTGGCTTTGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTCGGGACTTCATTTTCCTTGAACACGAGCCGTGGCTTTGTGTC  550

seq1  TTGGGACAATCCTCCTTCTGTGGTTGCTTGCATTTTGCTTGACTTTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACAATCCTCCTTCTGTGGTTGCTTGCATTTTGCTTGACTTTTTGC  600

seq1  AGCTGTAAGCCTGCTGCCTTGCCAAACAGGAGTCATTATCTCCTTCCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAAGCCTGCTGCCTTGCCAAACAGGAGTCATTATCTCCTTCCATG  650

seq1  TGAACACTTCACCAGAGCATAGTTCACTTCAGTAGACTAGGCAGTCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACTTCACCAGAGCATAGTTCACTTCAGTAGACTAGGCAGTCATGG  700

seq1  CTTGGTTCACTAAAACTCTCAGACACCAACCTTCCATCCAGTTGCCAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTCACTAAAACTCTCAGACACCAACCTTCCATCCAGTTGCCAAGG  750

seq1  TTCCCAGATGAATTTCAAGAGCATTTTCAACTAGTGTGACACTTATACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGATGAATTTCAAGAGCATTTTCAACTAGTGTGACACTTATACAG  800

seq1  GTACAATAGACTCCCCTTTATCTTCAAGAATACATTCCAGGGGGCTGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATAGACTCCCCTTTATCTTCAAGAATACATTCCAGGGGGCTGGAG  850

seq1  AGATGGCTCAGTGGTT-AAGAGCACGGACTGCTCTCCCAGAAGTCCTGAG  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGATGGCTCAGTGGTTAAAGAGCACGGACTGCTCTCCCAGAAGTCCTGAG  900

seq1  TTCAATTCCCAGCAACCACATGTGGCTCATAACCATCTGCAATGAGATCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCCCAGCAACCACATGTGGCTCATAACCATCTGCAATGAGATCT  950

seq1  GATGCCCTCTTCTGGTGTGTCT-GAAGACAGTAATAATGCACTCATATAC  998
      ||||||||||| |||||||||| || ||||||||||||||||||||||||
seq2  GATGCCCTCTTTTGGTGTGTCTGGAGGACAGTAATAATGCACTCATATAC  1000

seq1  ATAAAATAAATAATTAAAAAAAAAGAATACATTCCAGGAATCCCAGTGGA  1048
      ||||||||||||| ||||||||||| ||||||||||||||||||||| ||
seq2  ATAAAATAAATAA-TAAAAAAAAAG-ATACATTCCAGGAATCCCAGT-GA  1047

seq1  TGCAAGAAACCTCACACAATACCAAATACCAG-ATAAGCAATATTTCTCC  1097
      ||| ||||||||||| ||||| ||||||| || |||||| ||||| || |
seq2  TGC-AGAAACCTCACCCAATA-CAAATACTAGAATAAGC-ATATTCCT-C  1093

seq1  TATAC-AAAACACTACAATAAAGCTTAATTTACATG  1132
      ||||| ||||||||| ||| ||||| ||||||||||
seq2  TATACAAAAACACTAAAAT-AAGCTAAATTTACATG  1128

seq1: chr1_130104072_130105168
seq2: B6Ng01-125G02.g_66_1152 (reverse)

seq1  ATAAGAAACTGGCCTTTCAGCACATCCTCTGTCTGGATTTGTGTAGAAAA  50
      |||||||||| || || ||||| ||||||||||| |||||||||||||||
seq2  ATAAGAAACT-GCATTCCAGCA-ATCCTCTGTCT-GATTTGTGTAGAAAA  47

seq1  ATATTTTAATTTGTTTCTACTCTTGAGTTTTTCACCATTGTTTTAAGTAT  100
      ||||||  | |||||||||||| |||||||||||||||||||||||||||
seq2  ATATTT--AATTGTTTCTACTC-TGAGTTTTTCACCATTGTTTTAAGTAT  94

seq1  GAATATTGAATACGTACATTTTAGCTAAATAATAGTTAATACAAAATG-T  149
      ||||| |||||||||||||||||||| |||||||||| |||||||||| |
seq2  GAATA-TGAATACGTACATTTTAGCT-AATAATAGTT-ATACAAAATGTT  141

seq1  TTTTTTCTGAAAGGACAATGATGAGCGTTAAAATTTCTTTCTTTAGTCTT  199
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTTTTCTGAAAGGACAATGATGAGCGTTAAAATTTCTTTCTTTAGTC-T  190

seq1  AAATGATAGATCATTTCTGTTTTATTTAACAGTATACACAAATCACGAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAGATCATTTCTGTTTTATTTAACAGTATACACAAATCACGAAA  240

seq1  GGATGAATTAGCAAGAGCAAGTTCATGTTATCAGTACAGTTTGGGGGCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAATTAGCAAGAGCAAGTTCATGTTATCAGTACAGTTTGGGGGCAT  290

seq1  ATTCTACAAGATAATGAACAGAATTTTCACAAGGGAGCAACTTAGGGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACAAGATAATGAACAGAATTTTCACAAGGGAGCAACTTAGGGAAA  340

seq1  ACATTATTTTCTTGAAAGTACTTGTCATTCTTATTTTTAATAAATCCACT  399
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTA-TTTCTTGAAAGTACTTGTCATTCTTATTTTTAATAAATCCACT  389

seq1  GTTGGTCAAGGACAGTCACAATTAATTGATGCTGCTTGTGAATGAAATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCAAGGACAGTCACAATTAATTGATGCTGCTTGTGAATGAAATAT  439

seq1  TAATGTAAAAATGTAGACTCAAGAGTCAGTGGGGTAAATAGTTCATTTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAAAAATGTAGACTCAAGAGTCAGTGGGGTAAATAGTTCATTTCA  489

seq1  ATCCAAAGGTGGTGTGGTCCATAACCATACCATCCCTTTCATGCTGGGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAGGTGGTGTGGTCCATAACCATACCATCCCTTTCATGCTGGGTC  539

seq1  TTCTTTGATCTCAGAAGGAGAAAAGTGTGAAGCTTAAACTTGATTGTCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGATCTCAGAAGGAGAAAAGTGTGAAGCTTAAACTTGATTGTCAA  589

seq1  CTTGACTGGGTAGGAATTAATGAAGTACTCCTACCTCCTCCTTTCATGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTGGGTAGGAATTAATGAAGTACTCCTACCTCCTCCTTTCATGCT  639

seq1  CCACCTCGGTGTGTACTTGCAGGTCCTTGCAGGTAGGATTGGGAAAAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCGGTGTGTACTTGCAGGTCCTTGCAGGTAGGATTGGGAAAAAGG  689

seq1  AGGCCTGCTAACACAGGCATTCTTTTTCTCTGCTCCTGGGCCACCATGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGCTAACACAGGCATTCTTTTTCTCTGCTCCTGGGCCACCATGTG  739

seq1  TGATAGATACTCCACTCTGCCCTTCCTTCCATGATGGACTAGAACCTCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGATACTCCACTCTGCCCTTCCTTCCATGATGGACTAGAACCTCTG  789

seq1  AATCCATGAAGCAAAATAAACCCTCTTTCAGGACAGTACCACCTGCTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATGAAGCAAAATAAACCCTCTTTCAGGACAGTACCACCTGCTGTT  839

seq1  TTTTAAATCTGGGCATTCCTATTAGTTTTCGCCTGGCCTCATAAAACTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATCTGGGCATTCCTATTAGTTTTCGCCTGGCCTCATAAAACTGG  889

seq1  TTCTTCACTGGGAATCTCTACTACCTTTATCTTGGACTTTTCAGTCCATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACTGGGAATCTCTACTACCTTTATCTTGGACTTTTCAGTCCATA  939

seq1  CACTATATCTATCTAACTACTGCAAACTACTTTCTGTTCCTCAAACATAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATCTATCTAACTACTGCAAACTACTTTCTGTTCCTCAAACATAG  989

seq1  TAATTTTCCCCTTATTCTCGACCTTTACATTTTGTTGCAATATTCTTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCCCCTTATTCTCGACCTTTACATTTTGTTGCAATATTCTTTTT  1039

seq1  CTTTAAGGCAAATCACAGATATTAACACCTCCATATGTGTAAGAATTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGGCAAATCACAGATATTAACACCTCCATATGTGTAAGAATTC  1087