BAC Information

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BAC

Clone NameB6Ng01-126M13
Chromosome1 (Build37)
Map Location 80,865,619 - 80,958,291
singlet/doubletdoublet
Overlap geneLOC665092
Upstream geneEG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10
Downstream gene9430031J16Rik, EG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126M13.bB6Ng01-126M13.g
ACCDH929064DH929065
length1,1921,106
definitionDH929064|Mus musculus domesticus DNA, BAC clone: B6Ng01-126M13, 5' end.DH929065|Mus musculus domesticus DNA, BAC clone: B6Ng01-126M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,865,619 - 80,866,809)(80,957,168 - 80,958,291)
sequence
gaattctttcaccccttctcattctgttcagggcccaactcatgaactgg
tactgttgacttccagggttagtctgccaacatcaattcacccaggaaga
aaatctctcataggcatgctcaaagacccatttcttatggaattctagat
ttcctcaagttaaaaatgaacactaagtatcatataacataaatttatca
atataatattaaatagagttaccagtacatttttttccccttaagttttg
gagtttctgctattttgtttgaatcgacactgatatagtgtcaaaaagac
atcagatagagatgacaatgagtgcctgctactaatcctgatgacctgag
tttgattcctaaaacttacatcgtaaaaagagataaataacttttatagg
ctgttctctgaccccacgccccacacgtacacactcatgcacattataat
atgaatgtttatatactctctcatatacacaggaactaagtataaaatgt
aagaagttttttttttaaaggaagcacatagttttacagattgactctac
gaggtttctgaaccccagaaataagctttgtacaaatctatttgtatttt
tcttgaaaatgtacttatacacaattatcaccaagactgtgggttttatc
aaaatggctctgataatttttcattctcttgtaaagggtgaacatatgga
tagggaccacttctttcaggaacagttactctggtctttgtcactcaaga
cagaaataaagaattttccttagtatcttctatctttattggtaattttt
acgttctccagagctgtcccagcatattctttgcactaaattaccttttg
tttacagaaaccatcagaatattattgataccacctttgttatcttggaa
cacattctcctatttctgggagtgagatgagcaaggtaggaggcaagatt
ttttttttttttgtaaattcaatctcagtgtgctgtactgctgaagcaat
catgtaacaggtcaagttaaagaggtccatgcttctttagataaactgct
gtacatgtttctttaggttgttaactggtaaggcgatacagtgataaaga
gggaagggtgggtgtttaattggttgatcttcatttagaatgtggatctg
caagaaatggaaggagactggtgtgcagtaagatacaatgcc
gaattcatgaacaataccaggctgattagaagaaataatggctaattggg
gatttacagatagttttccaaatggacttggtgtgaaagtaacttgaaat
ggtgtagtcaatatagaaaatataatgaggtttggaagccataaaactgt
aaagaaatgatctcatctgattagaaacagaagcataagaggaataaaga
gagccaaaatgttgggtcctgccatgttctcctctacactattcaacctt
gagaagaggagaagccaaagcaaaggatgcattcaggtgtgtttgcaatc
ccactgtagcattcctttttccctgacaaatgttgcaattagaggcatta
atcagatgctaataactcttccaatattcagagaacgtgttaaacacaga
ttacaaaagtaatgtgcaacttgtgttcttgtatcacaagctaaattact
tggttagatgaaaattatagtttataaattacccttagaaggtaaattag
tctgtgtaattgttaaccttaatgtaaatgttatattaacaagggtaagt
tacttacaagtacaaaaaaaaaaatgagtggtgttttttcccagtgagaa
ttcatagcaccaaggcaaactccatgacactaatgcatagacaaaagagt
ttatacacagcatttaggaaatattcagatcataggcagttcctttattt
tcatggctttgtaagtctgtcttagaagatgtgttccagttgtcacggcc
attagtcaatgatccgtgattaatcatgagattgattttgttaattttgt
gatactcctgcttacttccaaacccattgagaaatagggttcttggactc
taacacatagaaaatagtaggaagagtagatgtgacttgatgaatcagcc
atgggctgctgaggagatggtatgcatatgaacacgttagtcccgtgagt
tggctaaattgtacttggatacccattggataatgaacatgctttcattt
ctttttgcaggtatgtaatctttgaagattcatcctagctgtacagtata
cggattattaatattttggtttctatgttgctttgggcatttgaaataac
tatatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80865619_80866809
seq2: B6Ng01-126M13.b_48_1239

seq1  GAATTCTTTCACCCCTTCTCATTCTGTTCAGGGCCCAACTCATGAACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACCCCTTCTCATTCTGTTCAGGGCCCAACTCATGAACTGG  50

seq1  TACTGTTGACTTCCAGGGTTAGTCTGCCAACATCAATTCACCCAGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTGACTTCCAGGGTTAGTCTGCCAACATCAATTCACCCAGGAAGA  100

seq1  AAATCTCTCATAGGCATGCTCAAAGACCCATTTCTTATGGAATTCTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTCATAGGCATGCTCAAAGACCCATTTCTTATGGAATTCTAGAT  150

seq1  TTCCTCAAGTTAAAAATGAACACTAAGTATCATATAACATAAATTTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAGTTAAAAATGAACACTAAGTATCATATAACATAAATTTATCA  200

seq1  ATATAATATTAAATAGAGTTACCAGTACATTTTTTTCCCCTTAAGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATATTAAATAGAGTTACCAGTACATTTTTTTCCCCTTAAGTTTTG  250

seq1  GAGTTTCTGCTATTTTGTTTGAATCGACACTGATATAGTGTCAAAAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTGCTATTTTGTTTGAATCGACACTGATATAGTGTCAAAAAGAC  300

seq1  ATCAGATAGAGATGACAATGAGTGCCTGCTACTAATCCTGATGACCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATAGAGATGACAATGAGTGCCTGCTACTAATCCTGATGACCTGAG  350

seq1  TTTGATTCCTAAAACTTACATCGTAAAAAGAGATAAATAACTTTTATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCCTAAAACTTACATCGTAAAAAGAGATAAATAACTTTTATAGG  400

seq1  CTGTTCTCTGACCCCACGCCCCACACGTACACACTCATGCACATTATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCTGACCCCACGCCCCACACGTACACACTCATGCACATTATAAT  450

seq1  ATGAATGTTTATATACTCTCTCATATACACAGGAACTAAGTATAAAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTTTATATACTCTCTCATATACACAGGAACTAAGTATAAAATGT  500

seq1  AAGAAGTTTTTTTTTTAAAGGAAGCACATAGTTTTACAGATTGACTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTTTTTTTTTAAAGGAAGCACATAGTTTTACAGATTGACTCTAC  550

seq1  GAGGTTTCTGAACCCCAGAAATAAGCTTTGTACAAATCTATTTGTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTCTGAACCCCAGAAATAAGCTTTGTACAAATCTATTTGTATTTT  600

seq1  TCTTGAAAATGTACTTATACACAATTATCACCAAGACTGTGGGTTTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAATGTACTTATACACAATTATCACCAAGACTGTGGGTTTTATC  650

seq1  AAAATGGCTCTGATAATTTTTCATTCTCTTGTAAAGGGTGAACATATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCTCTGATAATTTTTCATTCTCTTGTAAAGGGTGAACATATGGA  700

seq1  TAGGGACCACTTCTTTCAGGAACAGTTACTCTGGTCTTTGTCACTCAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACCACTTCTTTCAGGAACAGTTACTCTGGTCTTTGTCACTCAAGA  750

seq1  CAGAAATAAAGAATTTTCCTTAGTATCTTCTATCTTTATTGGTAATTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAAAGAATTTTCCTTAGTATCTTCTATCTTTATTGGTAATTTTT  800

seq1  ACGTTCTCCAGAGCTGTCCCAGCATATTCTTTGCACTAAATTACCTTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCTCCAGAGCTGTCCCAGCATATTCTTTGCACTAAATTACCTTTTG  850

seq1  TTTACAGAAACCATCAGAATATTATTGATACCACCTTTGTTATCTTGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGAAACCATCAGAATATTATTGATACCACCTTTGTTATCTTGGAA  900

seq1  CACATTCTCCTATTTCTGGGAGTGAGATGAGCAAGGTAAGAGGCAAGA-T  949
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  CACATTCTCCTATTTCTGGGAGTGAGATGAGCAAGGTAGGAGGCAAGATT  950

seq1  TTTTTTTTTTTTGTAAATTCAATCTCAAGTGTGCTGTACTGCTGAAGCAA  999
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTTTTTTTTTGTAAATTCAATCTC-AGTGTGCTGTACTGCTGAAGCAA  999

seq1  TCATGTAACAGGTCAAGTTTATAGAGGTCCATGCTTCTTTAGATAAAACT  1049
      ||||||||||||||||| ||| |||||||||||||||||||||| |||||
seq2  TCATGTAACAGGTCAAG-TTAAAGAGGTCCATGCTTCTTTAGAT-AAACT  1047

seq1  GCTGTACCATGTTTCTTTAGGTTG-TAACTGGTAAGGCGATTACCAGTGA  1098
      |||||| ||||||||||||||||| ||||||||||||||||   ||||||
seq2  GCTGTA-CATGTTTCTTTAGGTTGTTAACTGGTAAGGCGAT--ACAGTGA  1094

seq1  TAGAAGAGG--AAGGTTGGTG-TTAATT-GTTGATCTTTCATTTAGGATG  1144
      || ||||||  | ||| |||| |||||| ||||||| ||||||||| |||
seq2  TA-AAGAGGGAAGGGTGGGTGTTTAATTGGTTGATC-TTCATTTAGAATG  1142

seq1  T-GATCTGC-AGAAAATGAAAGAGAACTGTGTGCAGT-AGTTACAATGCC  1191
      | ||||||| |||||  ||| ||||   ||||||||| || |||||||||
seq2  TGGATCTGCAAGAAATGGAAGGAGACTGGTGTGCAGTAAGATACAATGCC  1192

seq1: chr1_80957168_80958291
seq2: B6Ng01-126M13.g_70_1175 (reverse)

seq1  GATATAGTTATTTTCATAAATGCCCAAAGGCAACATAGAAAACCAAAATA  50
      |||||||||||||    ||||||||||| ||||||||| |||||||||| 
seq2  GATATAGTTATTT---CAAATGCCCAAA-GCAACATAG-AAACCAAAAT-  44

seq1  AATAATAATCACTGTATACTTGGTAACAGCTAGGATGGAATTCTCATAGA  100
      | |||||||  | |||||||  || ||||||||||| ||||  ||| |||
seq2  ATTAATAAT--CCGTATACT--GT-ACAGCTAGGAT-GAATCTTCAAAGA  88

seq1  TTTACATACCTGCAACAGGAAATG-AAGCATGTTCATTATTCCAATGGGT  149
       |||||||||||||| | |||||| |||||||||||||| ||||||||| 
seq2  -TTACATACCTGCAAAAAGAAATGAAAGCATGTTCATTA-TCCAATGGG-  135

seq1  TATCCAAGTACAATTTAGCCAACTCACGGGACTAACGTGTTCATATGCAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAGTACAATTTAGCCAACTCACGGGACTAACGTGTTCATATGCAT  185

seq1  ACCATCT-CTCAGCAGCCCATGGCTGATTTCATTCAAGTCACATCTACTT  248
      ||||||| ||||||||||||||||||| |||| ||||||||||||||| |
seq2  ACCATCTCCTCAGCAGCCCATGGCTGA-TTCA-TCAAGTCACATCTAC-T  232

seq1  CTTCCTACTATTTTTCTATGTGTTAGAGTCCAAGAACCCTATTTCTCAAT  298
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTACTA-TTTTCTATGTGTTAGAGTCCAAGAACCCTATTTCTCAAT  281

seq1  GGGTTTTGGAAGTAAGCAGGAGTATCACAAAATTAACAAAATCAATCTCA  348
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGG-TTTGGAAGTAAGCAGGAGTATCACAAAATTAACAAAATCAATCTCA  330

seq1  TGATTAATCACGGATCATTGACTAATGGCCGTGACAACTGGAACACATCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATCACGGATCATTGACTAATGGCCGTGACAACTGGAACACATCT  380

seq1  TCTAAGACAGACTTACAAAGCCATGAAAATAAAGGAACTGCCTATGATCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGACAGACTTACAAAGCCATGAAAATAAAGGAACTGCCTATGATCT  430

seq1  GAATATTTCCTAAATGCTGTGTATAAACTCTTTTGTCTATGCATTAGTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTCCTAAATGCTGTGTATAAACTCTTTTGTCTATGCATTAGTGT  480

seq1  CATGGAGTTTGCCTTGGTGCTATGAATTCTCACTGGGAAAAAACACCACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGTTTGCCTTGGTGCTATGAATTCTCACTGGGAAAAAACACCACT  530

seq1  CATTTTTTTTTTTGTACTTGTAAGTAACTTACCCTTGTTAATATAACATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTTTTTGTACTTGTAAGTAACTTACCCTTGTTAATATAACATT  580

seq1  TACATTAAGGTTAACAATTACACAGACTAATTTACCTTCTAAGGGTAATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAAGGTTAACAATTACACAGACTAATTTACCTTCTAAGGGTAATT  630

seq1  TATAAACTATAATTTTCATCTAACCAAGTAATTTAGCTTGTGATACAAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTATAATTTTCATCTAACCAAGTAATTTAGCTTGTGATACAAGA  680

seq1  ACACAAGTTGCACATTACTTTTGTAATCTGTGTTTAACACGTTCTCTGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTTGCACATTACTTTTGTAATCTGTGTTTAACACGTTCTCTGAA  730

seq1  TATTGGAAGAGTTATTAGCATCTGATTAATGCCTCTAATTGCAACATTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAAGAGTTATTAGCATCTGATTAATGCCTCTAATTGCAACATTTG  780

seq1  TCAGGGAAAAAGGAATGCTACAGTGGGATTGCAAACACACCTGAATGCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAAAAAGGAATGCTACAGTGGGATTGCAAACACACCTGAATGCAT  830

seq1  CCTTTGCTTTGGCTTCTCCTCTTCTCAAGGTTGAATAGTGTAGAGGAGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTTTGGCTTCTCCTCTTCTCAAGGTTGAATAGTGTAGAGGAGAA  880

seq1  CATGGCAGGACCCAACATTTTGGCTCTCTTTATTCCTCTTATGCTTCTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGGACCCAACATTTTGGCTCTCTTTATTCCTCTTATGCTTCTGT  930

seq1  TTCTAATCAGATGAGATCATTTCTTTACAGTTTTATGGCTTCCAAACCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATCAGATGAGATCATTTCTTTACAGTTTTATGGCTTCCAAACCTC  980

seq1  ATTATATTTTCTATATTGACTACACCATTTCAAGTTACTTTCACACCAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTTCTATATTGACTACACCATTTCAAGTTACTTTCACACCAAG  1030

seq1  TCCATTTGGAAAACTATCTGTAAATCCCCAATTAGCCATTATTTCTTCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGGAAAACTATCTGTAAATCCCCAATTAGCCATTATTTCTTCTA  1080

seq1  ATCAGCCTGGTATTGTTCATGAATTC  1124
      ||||||||||||||||||||||||||
seq2  ATCAGCCTGGTATTGTTCATGAATTC  1106