BAC Information

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BAC

Clone NameB6Ng01-126P10
Chromosome1 (Build37)
Map Location 61,962,707 - 62,124,735
singlet/doubletdoublet
Overlap genePard3b
Upstream geneCtla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070, A430093A21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126P10.bB6Ng01-126P10.g
ACCDH929202DH929203
length1,218911
definitionDH929202|Mus musculus domesticus DNA, BAC clone: B6Ng01-126P10, 5' end.DH929203|Mus musculus domesticus DNA, BAC clone: B6Ng01-126P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,962,707 - 61,963,934)(62,123,817 - 62,124,735)
sequence
gaattcaatacactttcctagcctattaagaatctgtaagtgatcagtac
ttatacttaaaattattcctctgaaaatatgaaccatagttcctagtaac
tgatctgtaaattattcacagctttgagaaaagcttttggctatacatct
agaaaggtatagctcacaggaataggcatatagacattcatagaatttgt
agttccttgaagacaaggttttagcatgtaacccaagaagaataatcctt
tatcagccactagcttttcccatgtgcacagcttttcaaattaagcaaaa
ccttttcatatcaggtctactaaaagtgcaaaactcaattttatgaaaat
tgaagccaaacatggttttattattctaagtcttgtcactccccactgtt
tacagcaccaaataaatattaagtcgaagattccaacttgtgttgtcacc
tgctttttgattttccatgggttcttcctttcatcttgaaagtgtttcat
tgtgggaattatctgatagcaaatggtttgttgttctcttgctatgcctg
tatttcccatatctggcgatcactttcaacttctgacttggcttctgcat
gtagcattggaccctccatccttccttctctgccccaagccttgacacga
atcttttggtggaagtcagagatagatttatgctgtgccccattttgtgg
cttcatggttaaacactgtagttagatctgttggtttagatgaaaatata
aagatcttcctgagactagaaaggtctcagatgatactgtcctacagact
gctgtaatatatcttgagccaggaccccttgtgacccagtatgcttcccc
ttcctgcctttacttctagaacacctaaagtttttttcctgtcatggaac
ttatatcctgactgtttcttctttctttagggctctctgacagtatgttc
tcttggaagccaccactttctgagttaaagtacaaagtccttcttttcta
ttcaaagaagtctttcctggccatcctgcctaatgtaggtctatagcaga
agtcatgacattcttcatcatgtacctatctccttatctcttcatatttg
tttgttacaatttcaactatatatctctttcagttgtaagggtctgtctc
ttcactgttgatgtaactcttaattggagaattatttggttccacaatcc
ttggtctaacaggagtac
gaattcccagttagctggagttcccaatgagagtcctctgcaagaaaata
ggtgctcttcaatacgatacctaatcttgagctaaagaaggaatacacca
agagccatgcatgaggaaagagtatgaggggggagcatgaggcctcaacc
ctacagaaagaactctagtcaaccaaagaatgttgaaagcagcagaaaca
gtctttcccagtgaagagcacaatgattggctatttaataccgaatgctc
agctctggaaacatacacatatataggagtaacattatataaactgaata
ggctatatttggatatatatgtaaatatacatgtatatgtatgtacatgc
atataacaacaattattttttaaaaacaattaatttttaaaaggtgacca
tgaatttggaggagaatgaagaaaggcatatgagaggtttggagggagga
aaggaaaagaaaaagatgcaattataatataaaaaattaaaagaaataat
gaaacatacatatttaaaagagaaggctttctcaaggactaagtcatctc
tctggcacctagagctttaaataggataatgagagaacagtatatctaaa
ctgtttttaaaggcactactttaaggaaaataattacaccaattgggaaa
atacccatcaactggtaaatactcaataatacagcatagcagctcctact
ttataatctttggcattggttcttgaaaacaaaattataccaaatcgtga
gattactttagttaattcgtcaccctgatatacatttttcataagtgctc
taaaagtgaggctcgtaatgagacagggatgggctttaggagagtttaat
atgttacattattgagtgtcatgcttgtgatgacatgatggccattacag
cgttagcttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61962707_61963934
seq2: B6Ng01-126P10.b_49_1266

seq1  GAATTCAATACACTTTCCTAGCCTATTAAGAATCTGTAAGTGATCAGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATACACTTTCCTAGCCTATTAAGAATCTGTAAGTGATCAGTAC  50

seq1  TTATACTTAAAATTATTCCTCTGAAAATATGAACCATAGTTCCTAGTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTTAAAATTATTCCTCTGAAAATATGAACCATAGTTCCTAGTAAC  100

seq1  TGATCTGTAAATTATTCACAGCTTTGAGAAAAGCTTTTGGCTATACATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGTAAATTATTCACAGCTTTGAGAAAAGCTTTTGGCTATACATCT  150

seq1  AGAAAGGTATAGCTCACAGGAATAGGCATATAGACATTCATAGAATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTATAGCTCACAGGAATAGGCATATAGACATTCATAGAATTTGT  200

seq1  AGTTCCTTGAAGACAAGGTTTTAGCATGTAACCCAAGAAGAATAATCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTGAAGACAAGGTTTTAGCATGTAACCCAAGAAGAATAATCCTT  250

seq1  TATCAGCCACTAGCTTTTCCCATGTGCACAGCTTTTCAAATTAAGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCCACTAGCTTTTCCCATGTGCACAGCTTTTCAAATTAAGCAAAA  300

seq1  CCTTTTCATATCAGGTCTACTAAAAGTGCAAAACTCAATTTTATGAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCATATCAGGTCTACTAAAAGTGCAAAACTCAATTTTATGAAAAT  350

seq1  TGAAGCCAAACATGGTTTTATTATTCTAAGTCTTGTCACTCCCCACTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCAAACATGGTTTTATTATTCTAAGTCTTGTCACTCCCCACTGTT  400

seq1  TACAGCACCAAATAAATATTAAGTCGAAGATTCCAACTTGTGTTGTCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCACCAAATAAATATTAAGTCGAAGATTCCAACTTGTGTTGTCACC  450

seq1  TGCTTTTTGATTTTCCATGGGTTCTTCCTTTCATCTTGAAAGTGTTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTGATTTTCCATGGGTTCTTCCTTTCATCTTGAAAGTGTTTCAT  500

seq1  TGTGGGAATTATCTGATAGCAAATGGTTTGTTGTTCTCTTGCTATGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAATTATCTGATAGCAAATGGTTTGTTGTTCTCTTGCTATGCCTG  550

seq1  TATTTCCCATATCTGGCGATCACTTTCAACTTCTGACTTGGCTTCTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCATATCTGGCGATCACTTTCAACTTCTGACTTGGCTTCTGCAT  600

seq1  GTAGCATTGGACCCTCCATCCTTCCTTCTCTGCCCCAAGCCTTGACACGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATTGGACCCTCCATCCTTCCTTCTCTGCCCCAAGCCTTGACACGA  650

seq1  ATCTTTTGGTGGAAGTCAGAGATAGATTTATGCTGTGCCCCATTTTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGGTGGAAGTCAGAGATAGATTTATGCTGTGCCCCATTTTGTGG  700

seq1  CTTCATGGTTAAACACTGTAGTTAGATCTGTTGGTTTAGATGAAAATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGGTTAAACACTGTAGTTAGATCTGTTGGTTTAGATGAAAATATA  750

seq1  AAGATCTTCCTGAGACTAGAAAGGTCTCAGATGATACTGTCCTACAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTTCCTGAGACTAGAAAGGTCTCAGATGATACTGTCCTACAGACT  800

seq1  GCTGTAATATATCTTGAGCCAGGACCCCTTGTGACCCAGTATGCTTCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAATATATCTTGAGCCAGGACCCCTTGTGACCCAGTATGCTTCCCC  850

seq1  TTCCTGCCTTTACTTCTAGAACACCTAAAGTTTTTTTCCTGTCATGGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCTTTACTTCTAGAACACCTAAAGTTTTTTTCCTGTCATGGAAC  900

seq1  TTATATCCTGACTGTTTCTTCTTTCTTTAGGGCTCTCTGACAGTATGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCCTGACTGTTTCTTCTTTCTTTAGGGCTCTCTGACAGTATGTTC  950

seq1  TCTTGGAAGCCACCACTTTCTGAGTTAAAGTACAAAGTCCTTC-TTTCTA  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTTGGAAGCCACCACTTTCTGAGTTAAAGTACAAAGTCCTTCTTTTCTA  1000

seq1  TTCAAAGAAGTCTTTCCTGGCCATCCTGCCTAATGTAGTTCTAATAGCAG  1049
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  TTCAAAGAAGTCTTTCCTGGCCATCCTGCCTAATGTAGGTCT-ATAGCAG  1049

seq1  -AGTCATGACATTCTTCATCATGTACCTATCTCCTTATCTTCTTCATATT  1098
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGTCATGACATTCTTCATCATGTACCTATCTCCTTATC-TCTTCATATT  1098

seq1  TGTTTGTTATCATTTCAACTAATTATATCTCTTTCAGTTTGTAA-GGTCT  1147
      |||||||||  ||||||||||  |||||||||||||| |||||| |||||
seq2  TGTTTGTTACAATTTCAACTA--TATATCTCTTTCAG-TTGTAAGGGTCT  1145

seq1  GTCTC-TCACTGTTGAATGTAAACTCTAAAATGGGAGAATTATTTGGTTC  1196
      ||||| ||||||||| |||| ||||||  ||| |||||||||||||||||
seq2  GTCTCTTCACTGTTG-ATGT-AACTCT-TAATTGGAGAATTATTTGGTTC  1192

seq1  CCACCCAATCCTTGGTACTAACAAGAGAGTAC  1228
         | ||||||||||| ||||||   ||||||
seq2  ---CACAATCCTTGGT-CTAACA--GGAGTAC  1218

seq1: chr1_62123817_62124735
seq2: B6Ng01-126P10.g_70_980 (reverse)

seq1  GCAAGCTAAACGCTGGTTAATGGCCATACATGTCATCACATAGCATGACA  50
      ||||||| |||||||  |||||||||| |||||||||||| |||||||||
seq2  GCAAGCT-AACGCTG--TAATGGCCAT-CATGTCATCACA-AGCATGACA  45

seq1  CTCAATAATGTAACCATATTTAAACTCTCCTAAAAGCCCATCCCTGTCTC  100
      ||||||||||||| |||| |||||||||||| ||||||||||||||||||
seq2  CTCAATAATGTAA-CATA-TTAAACTCTCCT-AAAGCCCATCCCTGTCTC  92

seq1  ATTACGAGCCTCACTATTTAGAGCACTTTATGAAAAATGTATATCAGGGT  150
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  ATTACGAGCCTCACT-TTTAGAGCAC-TTATGAAAAATGTATATCAGGGT  140

seq1  GACGAATTAACTAAAGTAATCTCACGATTTGGTATAATTTTGTTTTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAATTAACTAAAGTAATCTCACGATTTGGTATAATTTTGTTTTCAAG  190

seq1  AACCAATGCCAAAGATTATAAAGTAGGAGCTGCTATGCTGTATTATTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATGCCAAAGATTATAAAGTAGGAGCTGCTATGCTGTATTATTGAG  240

seq1  TATTTACCAGTTGATGGGTATTTTCCCAATTGGTGTAATTATTTTCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACCAGTTGATGGGTATTTTCCCAATTGGTGTAATTATTTTCCTTA  290

seq1  AAGTAGTGCCTTT-AAAACAGTTTAGATATACTGTTCTCTCATTATCCTA  349
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTGCCTTTAAAAACAGTTTAGATATACTGTTCTCTCATTATCCTA  340

seq1  TTTAAAGCTCTAGGTGCCAGAGAGATGACTTAGTCCTTGAGAAAGCCTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCTCTAGGTGCCAGAGAGATGACTTAGTCCTTGAGAAAGCCTTC  390

seq1  TCTTTTAAATATGTATGTTTCATTATTTCTTTTAATTTTTTATATTATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAATATGTATGTTTCATTATTTCTTTTAATTTTTTATATTATAA  440

seq1  TTGCATCTTTTTCTTTTCCTTTCCTCCCTCCAAACCTCTCATATGCCTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCTTTTTCTTTTCCTTTCCTCCCTCCAAACCTCTCATATGCCTTT  490

seq1  CTTCATTCTCCTCCAAATTCATGGTCACCTTTTAAAAATTAATTGTTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCTCCTCCAAATTCATGGTCACCTTTTAAAAATTAATTGTTTTT  540

seq1  AAAAAATAATTGTTGTTATATGCATGTACATACATATACATGTATATTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAATTGTTGTTATATGCATGTACATACATATACATGTATATTTA  590

seq1  CATATATATCCAAATATAGCCTATTCAGTTTATATAATGTTACTCCTATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATCCAAATATAGCCTATTCAGTTTATATAATGTTACTCCTATA  640

seq1  TATGTGTATGTTTCCAGAGCTGAGCATTCGGTATTAAATAGCCAATCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATGTTTCCAGAGCTGAGCATTCGGTATTAAATAGCCAATCATT  690

seq1  GTGCTCTTCACTGGGAAAGACTGTTTCTGCTGCTTTCAACATTCTTTGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTCACTGGGAAAGACTGTTTCTGCTGCTTTCAACATTCTTTGGT  740

seq1  TGACTAGAGTTCTTTCTGTAGGGTTGAGGCCTCATGCTCCCCCCTCATAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGAGTTCTTTCTGTAGGGTTGAGGCCTCATGCTCCCCCCTCATAC  790

seq1  TCTTTCCTCATGCATGGCTCTTGGTGTATTCCTTCTTTAGCTCAAGATTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTCATGCATGGCTCTTGGTGTATTCCTTCTTTAGCTCAAGATTA  840

seq1  GGTATCGTATTGAAGAGCACCTATTTTCTTGCAGAGGACTCTCATTGGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCGTATTGAAGAGCACCTATTTTCTTGCAGAGGACTCTCATTGGGA  890

seq1  ACTCCAGCT-CCTGGGAATTC  919
      |||||||||  ||||||||||
seq2  ACTCCAGCTAACTGGGAATTC  911