BAC Information

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BAC

Clone NameB6Ng01-127N15
Chromosome1 (Build37)
Map Location 94,490,793 - 94,643,406
singlet/doubletdoublet
Overlap geneOlfr1411, Olfr1410, Olfr12, Myeov2, Otos
Upstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412
Downstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127N15.bB6Ng01-127N15.g
ACCDH929858DH929859
length1,114854
definitionDH929858|Mus musculus domesticus DNA, BAC clone: B6Ng01-127N15, 5' end.DH929859|Mus musculus domesticus DNA, BAC clone: B6Ng01-127N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,642,493 - 94,643,406)(94,490,793 - 94,491,640)
sequence
gaattctagcaggatacctctgaagttttctcctattaaaggacgtattt
caaatagagttgcagtattataccccagagcataacatgggtgggatatc
acccttaaggtgcctttcctactgtcagcatgcaaactgcttgtgtgttt
tctcttgaatggtgccaatatctttagaaatgatagccgttctgtttgca
ttcaccttttctgatactttaaatacatccatatttctttagtggctaaa
tgtaatgatctccacatttttttacagcatattctcaccataagcctccc
taaaatcagtcagcaataaccatgccacaaaaaattcattgcttttgaat
tctgacacacacacacacacacacacacacacacacacacacttagaaca
tagacaaaagctcatcatattatttattctagtagtaagaaggcaggcca
gctgccatctggtacctcctgacagtgtctactgtccataattctatccg
tgttcctctcttctgagcttccatcagagccaataactgagcacaagtcc
tagattctaagatttctctagcctgatttctaaactctcccacattcctc
ttgaagatgtggccaggttcctcacaactcctgggtaccaaaagctactt
gtctatcactgttacggataagtggcagatgcaagttatgtgtggatgtg
tctggctcctgtttctatttcagccagtccgacagttccttctttggagg
caggagcacctagaagcagagagcagttagacccagaggctgggctatca
ccttcaaaggcccttgtcacctatttttgccagccagctatcacccctta
tcctggcctcatagaatagctctttcagtagagggcagcatttcaagaca
cagatctgtggggggacataacaccaaatttgtcccaggttggcagacag
ccagagtaggcagagaaaggcagaccacaagtttccttgagagactcaga
gctctgacttgccagactgaaacaaagaagaccattctgtcatgggaaca
cattgtgctttttgttcaagagcttgccacacgtatggcttctgaaagag
agtcagagaggctt
gaattctttaagtagatgggaacagcaacagagggggtggggtgggaact
acaccacctgggagactgttctaatgaggggcattggtctttctgagatg
actctgccatactcccaatggtccttccccaagtctctgaggaccaaagc
ttcctgccaatagaccaagagaggataccatgagaaagagattggctgga
gccaatgcttagcctctggagctcagaggcagggtgaagttccagccaca
acagagaatggtgtccttgtaattggacactggaggccaagagtcccagc
cctgccagatgcagagaatactcccaagcaagacgaacccaacatgcact
gcctgtctgagagggaacagagaagaaccaaggcaaggaaggtgtcttcc
ctctttacaggacccagagcctgagacatcaaaaatattcacaccagacc
ctcagacacccgggtgcccacctgtccacaatcatcccattccactgcca
aggaagctgtaaatcaccttatgaacagggaccactgatgcccatcttca
aagaagcccatgcttgccagcctgaggatgcccggagagagctgttggct
gtgtgaccttgttgcagaccagactctcacctagatatggtaaagtgtgt
cacctgtcaggactgaaaatgtaggagagttggtgggctagagggtagcg
gggtcaacattcagcaggaagacatagattgtcttagtggtaggaatgtg
cctgttctgaatagctctgatcttcaccctgttcagagctagtactggga
gcctccaccctaaggcttagcttgttaaataaaagctcccatttctggca
gata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_94642493_94643406
seq2: B6Ng01-127N15.b_266_1164 (reverse)

seq1  AAGCCTTCTCTGACCCTCTTTCAGAAGCACATACGTGTGGCAAGGGCTCC  50
      ||||| |||||||| ||||||||||||| ||||||||||||||  ||| |
seq2  AAGCC-TCTCTGACTCTCTTTCAGAAGC-CATACGTGTGGCAA--GCT-C  45

seq1  TGGGACAAAAGGGCACAAATGGTGGTTCCCATGACAGAAATGTGTCCTCC  100
      | | ||||||  |||| ||||   |||||||||||||||   ||  || |
seq2  TTGAACAAAA-AGCAC-AATG--TGTTCCCATGACAGAA---TGGTCTTC  88

seq1  TTTGTCTCAGTCTTGGGCAAGTCAGAGCCTCCTGAGTCTCTCAAGGAAAA  150
      ||||| |||||||  |||||||||||||   ||||||||||||||| |||
seq2  TTTGTTTCAGTCT--GGCAAGTCAGAGC--TCTGAGTCTCTCAAGG-AAA  133

seq1  CTTGT-GTCTGCCTTTCTCTGCCTACTCTGGCTGTCTGCCAACCTGGG-C  198
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTGTGGTCTGCCTTTCTCTGCCTACTCTGGCTGTCTGCCAACCTGGGAC  183

seq1  AACTTTGGTGTTATGT-CCCCCACAGATCTGTGTCTTG-AATGCTTGCCC  246
      || ||||||||||||| ||||||||||||||||||||| ||||||   ||
seq2  AAATTTGGTGTTATGTCCCCCCACAGATCTGTGTCTTGAAATGCT--GCC  231

seq1  CTCTACTGAAAGAGCTATTCTATGAGGCCAGGATAAGGGGTGATAGCTGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTGAAAGAGCTATTCTATGAGGCCAGGATAAGGGGTGATAGCTGG  281

seq1  CTGGCAAAAATAGGTGACAAGGGCCTTTGAAGGTGATAGCCCAGCCTCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAAAATAGGTGACAAGGGCCTTTGAAGGTGATAGCCCAGCCTCTG  331

seq1  GGTCTAACTGCTCTCTGCTTCTAGGTGCTCCTGCCTCCAAAGAAGGAACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAACTGCTCTCTGCTTCTAGGTGCTCCTGCCTCCAAAGAAGGAACT  381

seq1  GTCGGACTGGCTGAAATAGAAACAGGAGCCAGACACATCCACACATAACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGACTGGCTGAAATAGAAACAGGAGCCAGACACATCCACACATAACT  431

seq1  TGCATCTGCCACTTATCCGTAACAGTGATAGACAAGTAGCTTTTGGTACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGCCACTTATCCGTAACAGTGATAGACAAGTAGCTTTTGGTACC  481

seq1  CAGGAGTTGTGAGGAACCTGGCCACATCTTCAAGAGGAATGTGGGAGAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTGTGAGGAACCTGGCCACATCTTCAAGAGGAATGTGGGAGAGT  531

seq1  TTAGAAATCAGGCTAGAGAAATCTTAGAATCTAGGACTTGTGCTCAGTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATCAGGCTAGAGAAATCTTAGAATCTAGGACTTGTGCTCAGTTA  581

seq1  TTGGCTCTGATGGAAGCTCAGAAGAGAGGAACACGGATAGAATTATGGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCTGATGGAAGCTCAGAAGAGAGGAACACGGATAGAATTATGGAC  631

seq1  AGTAGACACTGTCAGGAGGTACCAGATGGCAGCTGGCCTGCCTTCTTACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACACTGTCAGGAGGTACCAGATGGCAGCTGGCCTGCCTTCTTACT  681

seq1  ACTAGAATAAATAATATGATGAGCTTTTGTCTATGTTCTAAGTGTGTGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATAAATAATATGATGAGCTTTTGTCTATGTTCTAAGTGTGTGTG  731

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGAATTCAAAAGCAATGAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGAATTCAAAAGCAATGAAT  781

seq1  TTTTTGTGGCATGGTTATTGCTGACTGATTTTAGGGAGGCTTATGGTGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGGCATGGTTATTGCTGACTGATTTTAGGGAGGCTTATGGTGAG  831

seq1  AATATGCTGTAAAAAAATGTGGAGATCATTACATTTAGCCACTAAAGAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTGTAAAAAAATGTGGAGATCATTACATTTAGCCACTAAAGAAA  881

seq1  TATGGATGTATTTAAAGT  914
      ||||||||||||||||||
seq2  TATGGATGTATTTAAAGT  899

seq1: chr1_94490793_94491640
seq2: B6Ng01-127N15.g_68_921

seq1  GAATTCTTTAAGTAGATGGGAACAGCAACAGAGGGGGTGGGGTGGGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGTAGATGGGAACAGCAACAGAGGGGGTGGGGTGGGAACT  50

seq1  ACACCACCTGGGAGACTGTTCTAATGAGGGGCATTGGTCTTTCTGAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACCTGGGAGACTGTTCTAATGAGGGGCATTGGTCTTTCTGAGATG  100

seq1  ACTCTGCCATACTCCCAATGGTCCTTCCCCAAGTCTCTGAGGACCAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCCATACTCCCAATGGTCCTTCCCCAAGTCTCTGAGGACCAAAGC  150

seq1  TTCCTGCCAATAGACCAAGAGAGGATACCATGAGAAAGAGATTGGCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCAATAGACCAAGAGAGGATACCATGAGAAAGAGATTGGCTGGA  200

seq1  GCCAATGCTTAGCCTCTGGAGCTCAGAGGCAGGGTGAAGTTCCAGCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGCTTAGCCTCTGGAGCTCAGAGGCAGGGTGAAGTTCCAGCCACA  250

seq1  ACAGAGAATGGTGTCCTTGTAATTGGACACTGGAGGCCAAGAGTCCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAATGGTGTCCTTGTAATTGGACACTGGAGGCCAAGAGTCCCAGC  300

seq1  CCTGCCAGATGCAGAGAATACTCCCAAGCAAGACGAACCCAACATGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGATGCAGAGAATACTCCCAAGCAAGACGAACCCAACATGCACT  350

seq1  GCCTGTCTGAGAGGGAACAGAGAAGAACCAAGGCAAGGAAGGTGTCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTGAGAGGGAACAGAGAAGAACCAAGGCAAGGAAGGTGTCTTCC  400

seq1  CTCTTTACAGGACCCAGAGCCTGAGACATCAAAAATATTCACACCAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTACAGGACCCAGAGCCTGAGACATCAAAAATATTCACACCAGACC  450

seq1  CTCAGACACCCGGGTGCCCACCTGTCCACAATCATCCCATTCCACTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACACCCGGGTGCCCACCTGTCCACAATCATCCCATTCCACTGCCA  500

seq1  AGGAAGCTGTAAATCACCTTATGAACAGGGACCACTGATGCCCATCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTGTAAATCACCTTATGAACAGGGACCACTGATGCCCATCTTCA  550

seq1  AAGAAGCCCATGCTTGCCAGCCTGAGGATGCCCGGAGAGAGCTGTTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCCCATGCTTGCCAGCCTGAGGATGCCCGGAGAGAGCTGTTGGCT  600

seq1  GTGTGACCTTGTTGCAGACCAGACTCTCACCTAGATATGGT-AAGTGTGT  649
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGTGACCTTGTTGCAGACCAGACTCTCACCTAGATATGGTAAAGTGTGT  650

seq1  CACCTGTCAGGACTGAAAATGTAGGAGAGTTGGT-GGCTAGAGGGTAGCG  698
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CACCTGTCAGGACTGAAAATGTAGGAGAGTTGGTGGGCTAGAGGGTAGCG  700

seq1  GGGTCAACATTCAGCAGGAAGACATAGATTGTCTTAGTGGTAGGAATGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAACATTCAGCAGGAAGACATAGATTGTCTTAGTGGTAGGAATGTG  750

seq1  CCTGTTCTGAATAGCTCTGATCTTCACCCTGTTCAGAGCTAGTACT-GGA  797
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTGTTCTGAATAGCTCTGATCTTCACCCTGTTCAGAGCTAGTACTGGGA  800

seq1  GCCTCCACCCT-AGGCTTAGCTTGTTAAATAAAAGCTCCCA-TTCT-GCA  844
      ||||||||||| ||||||||||||||||||||||||||||| |||| |||
seq2  GCCTCCACCCTAAGGCTTAGCTTGTTAAATAAAAGCTCCCATTTCTGGCA  850

seq1  GATA  848
      ||||
seq2  GATA  854