BAC Information

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BAC

Clone NameB6Ng01-129D08
Chromosome1 (Build37)
Map Location 42,771,923 - 42,866,507
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3
Downstream geneMrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129D08.bB6Ng01-129D08.g
ACCDH930855DH930856
length9781,061
definitionDH930855|Mus musculus domesticus DNA, BAC clone: B6Ng01-129D08, 5' end.DH930856|Mus musculus domesticus DNA, BAC clone: B6Ng01-129D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,865,981 - 42,866,507)(42,771,923 - 42,772,993)
sequence
ttgggtgagtatttttttcataattgactgggagtcttggggacagctca
ggacttgctgtctgatctgccaacataagcagctttccctgacccagagc
cgactcttgtagctctaggccagatggactgaggcttccccgaaggcaaa
gtcaaccaggtcagtgtgaagaggaggcacagccgaggctcaacccctgc
tcttgtttttgcttttagtttaggcctccatggtccccattgccatgtgt
atgtttgtcataggatctccatgacacagggcaactgggaggagtcccag
ttaggattcaatattaatggtgttaccgaagccaaagatctcaaaccaga
tcagggactcattgcaatgaacatttgtgagtgaagatgggtggacagag
ggatattctgtggggcacactgtggcatactagagcttccactgtaagat
gttttctatgagctgttgtttgtttgtaggttttatactgagagagggca
gttggtaaggacaacgggagggtatgaggaaccaggagatgagtgggact
tgggtgcatgatgggaaactcgcaaaaaaagttaaaaaaaatatggaagc
accccccgtagacatacccagaggtatgttttcacagtgattctgaatcc
cgtcaagttgacagcctgagtaactctgccctggtcaccttgacactcaa
atacatcactttaagtcataacatttaacacttggatcccaggtctcaca
aagccaaaagtacccagtctatctccagatagccccataagtctgcaaca
gtctcaggactgctccaaagttcaagatctcttctgagtcttcccccagt
gcccaagtgcagagcacggggtttctctttattggcatgaatctttcaat
aattatagctgctttcagcccaccttttctggttgaaaaactggctcaca
ctagtttcttctcaagctggaccccgct
catgaggtgcgctggttttctgaaatgaaaacccgtgagcctaagctttt
gcagacagaaggaagcagaagaataaaggtaatagcaaccacttcaaagt
gtgcaatctagagatttagcctagcagtgggtctagaagagctgaagcct
ttatccagggagaaaggtgtggactgaagcgctgccctggggcttgggag
gggccagtctagtggagtctcacaagtggtattagtcaggaatagccttt
ggatgtcctgggcaagccacactgccccagccaggaggtgtagctcaggt
agcgtcatgtgataggcatgtgatagatgcaacaggtacctatgtactct
ctctgcaagacagaagcccaggacagaccaaagtaatgattgccacactg
tctaatttggtgaatcaacgagtctcttttttgaaaaaaaaaaaaaacat
aatggggttactaataggagtataggttaggtgttaattagatggcacag
gggtgactaaaaagcagtgatgccacaggaagcccactcctgacatgaga
catctgaaaactaaccattgcagctttctctgtagctgtcagtcatctcc
aagtgggaacttctctttctaagtttgtctagtcgctctctaccagccct
gccaactctttacacttcccatcttacgccccccacctttattgttagaa
gaagacctcacaaatccttcagtttttgtttccctacatatgaccttttg
tttacctcctgatggtcttgagccttgccttctctcctgaaacaaacgtt
tcaacttggagggaacataccatacagcaggggccctagtagtctctccc
tcaagggttcctagtccattgtgaaagtcaagggttcttgtgtcctggaa
ggtccaaactggggcctcctaatcaggacagaataggctggaaagtatcc
tggagacatgtaggtgggtggcagaaagacttgagcagatgagcatcagg
gagagaaggagagaggtgactcccaagtcaacattctgcagcttatagct
gtctctggccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_42865981_42866507
seq2: B6Ng01-129D08.b_58_584 (reverse)

seq1  TCATACCCTCCCGTTGTCCTTACCAACTGCCCTCTCTCAGTATAAAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCCTCCCGTTGTCCTTACCAACTGCCCTCTCTCAGTATAAAACCT  50

seq1  ACAAACAAACAACAGCTCATAGAAAACATCTTACAGTGGAAGCTCTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAACAGCTCATAGAAAACATCTTACAGTGGAAGCTCTAGTA  100

seq1  TGCCACAGTGTGCCCCACAGAATATCCCTCTGTCCACCCATCTTCACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGTGTGCCCCACAGAATATCCCTCTGTCCACCCATCTTCACTCA  150

seq1  CAAATGTTCATTGCAATGAGTCCCTGATCTGGTTTGAGATCTTTGGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTCATTGCAATGAGTCCCTGATCTGGTTTGAGATCTTTGGCTTC  200

seq1  GGTAACACCATTAATATTGAATCCTAACTGGGACTCCTCCCAGTTGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACACCATTAATATTGAATCCTAACTGGGACTCCTCCCAGTTGCCCT  250

seq1  GTGTCATGGAGATCCTATGACAAACATACACATGGCAATGGGGACCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATGGAGATCCTATGACAAACATACACATGGCAATGGGGACCATGG  300

seq1  AGGCCTAAACTAAAAGCAAAAACAAGAGCAGGGGTTGAGCCTCGGCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTAAACTAAAAGCAAAAACAAGAGCAGGGGTTGAGCCTCGGCTGTG  350

seq1  CCTCCTCTTCACACTGACCTGGTTGACTTTGCCTTCGGGGAAGCCTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTTCACACTGACCTGGTTGACTTTGCCTTCGGGGAAGCCTCAGT  400

seq1  CCATCTGGCCTAGAGCTACAAGAGTCGGCTCTGGGTCAGGGAAAGCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGGCCTAGAGCTACAAGAGTCGGCTCTGGGTCAGGGAAAGCTGCT  450

seq1  TATGTTGGCAGATCAGACAGCAAGTCCTGAGCTGTCCCCAAGACTCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGGCAGATCAGACAGCAAGTCCTGAGCTGTCCCCAAGACTCCCAG  500

seq1  TCAATTATGAAAAAAATACTCACCCAA  527
      |||||||||||||||||||||||||||
seq2  TCAATTATGAAAAAAATACTCACCCAA  527

seq1: chr1_42771923_42772993
seq2: B6Ng01-129D08.g_76_1136

seq1  CATGAGGTGCGCTGGTTTTCTGAAATGAAAACCCGTGAGCCTAAGCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGTGCGCTGGTTTTCTGAAATGAAAACCCGTGAGCCTAAGCTTTT  50

seq1  GCAGACAGAAGGAAGCAGAAGAATAAAGGTAATAGCAACCACTTCAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGAAGGAAGCAGAAGAATAAAGGTAATAGCAACCACTTCAAAGT  100

seq1  GTGCAATCTAGAGATTTAGCCTAGCAGTGGGTCTAGAAGAGCTGAAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATCTAGAGATTTAGCCTAGCAGTGGGTCTAGAAGAGCTGAAGCCT  150

seq1  TTATCCAGGGAGAAAGGTGTGGACTGAAGCGCTGCCCTGGGGCTTGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAGGGAGAAAGGTGTGGACTGAAGCGCTGCCCTGGGGCTTGGGAG  200

seq1  GGGCCAGTCTAGTGGAGTCTCACAAGTGGTATTAGTCAGGAATAGCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGTCTAGTGGAGTCTCACAAGTGGTATTAGTCAGGAATAGCCTTT  250

seq1  GGATGTCCTGGGCAAGCCACACTGCCCCAGCCAGGAGGTGTAGCTCAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCCTGGGCAAGCCACACTGCCCCAGCCAGGAGGTGTAGCTCAGGT  300

seq1  AGCGTCATGTGATAGGCATGTGATAGATGCAACAGGTACCTATGTACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCATGTGATAGGCATGTGATAGATGCAACAGGTACCTATGTACTCT  350

seq1  CTCTGCAAGACAGAAGCCCAGGACAGACCAAAGTAATGATTGCCACACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAAGACAGAAGCCCAGGACAGACCAAAGTAATGATTGCCACACTG  400

seq1  TCTAATTTGGTGAATCAACGAGTCTCTTTTTTGAAAAAAAAAAAAAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTGGTGAATCAACGAGTCTCTTTTTTGAAAAAAAAAAAAAACAT  450

seq1  AATGGGGTTACTAATAGGAGTATAGGTTAGGTGTTAATTAGATGGCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGTTACTAATAGGAGTATAGGTTAGGTGTTAATTAGATGGCACAG  500

seq1  GGGTGACTAAAAAGCAGTGATGCCACAGGAAGCCCACTCCTGACATGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACTAAAAAGCAGTGATGCCACAGGAAGCCCACTCCTGACATGAGA  550

seq1  CATCTGAAAACTAACCATTGCAGCTTTCTCTGTAGCTGTCAGTCATCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAAAACTAACCATTGCAGCTTTCTCTGTAGCTGTCAGTCATCTCC  600

seq1  AAGTGGGAACTTCTCTTTCTAAGTTTGTCTAGTCGCTCTCTACCAGCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGAACTTCTCTTTCTAAGTTTGTCTAGTCGCTCTCTACCAGCCCT  650

seq1  GCCAACTCTTTACACTTCCCATCTTACGCCCCCCACCTTTATTGTTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTCTTTACACTTCCCATCTTACGCCCCCCACCTTTATTGTTAGAA  700

seq1  GAAGACCTCACAAATCCTTCAGGTTTTTGTTTCCCTACATATGACCTTTT  750
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAAGACCTCACAAATCCTTCA-GTTTTTGTTTCCCTACATATGACCTTTT  749

seq1  GTTTACCTCCTGATGGTCTTGAGCCTTGCCTTCTCTCCTGAAACAAACGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCTCCTGATGGTCTTGAGCCTTGCCTTCTCTCCTGAAACAAACGT  799

seq1  TTCAACTTGGAGGGAACATACCATACAGCAGGGGCCCCTAGTAGTCTCTC  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCAACTTGGAGGGAACATACCATACAGCAGGGG-CCCTAGTAGTCTCTC  848

seq1  CCCCAAGGGTTCCTAGTCCA-TGTGAAAGTCAAGGG-TCCTGTGTCCTGG  898
      || ||||||||||||||||| ||||||||||||||| || ||||||||||
seq2  CCTCAAGGGTTCCTAGTCCATTGTGAAAGTCAAGGGTTCTTGTGTCCTGG  898

seq1  AAGGTCCAAACTGGGGCCCTCCTAATCAGGACAGAATAGCCTGGAAAGTA  948
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  AAGGTCCAAACTGGGG-CCTCCTAATCAGGACAGAATAGGCTGGAAAGTA  947

seq1  TCCTGGAGAACATGTAGGTGGGTGGCAGAAAGACTTGAGCAGATGAGCAA  998
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  TCCTGGAG-ACATGTAGGTGGGTGGCAGAAAGACTTGAGCAGATGAGC-A  995

seq1  TCAGGGAGAGAAGGGAGAAGAGGTGACTCCCAGGTCCAAAACCATCCTGC  1048
      |||||||||||| |||| |||||||||||||| |||    | ||| ||||
seq2  TCAGGGAGAGAA-GGAG-AGAGGTGACTCCCAAGTC----AACATTCTGC  1039

seq1  AGCTTTAATAGCTG-CTCTGGCCC  1071
      |||||  ||||||| |||||||||
seq2  AGCTT--ATAGCTGTCTCTGGCCC  1061