BAC Information

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BAC

Clone NameB6Ng01-131C07
Chromosome1 (Build37)
Map Location 53,918,727 - 54,069,239
singlet/doubletdoublet
Overlap geneHecw2
Upstream geneHibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131C07.bB6Ng01-131C07.g
ACCDH932277DH932278
length1,070540
definitionDH932277|Mus musculus domesticus DNA, BAC clone: B6Ng01-131C07, 5' end.DH932278|Mus musculus domesticus DNA, BAC clone: B6Ng01-131C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,918,727 - 53,919,803)(54,068,694 - 54,069,239)
sequence
gaattctgaccttctccctacacctttaaacttatctgtagtggcagata
cctatttcctttcatgtgtcatccatgggtctaactgctccaaatgctga
tctgagcctttgcctgtggtgtgctgccttgcaagagctggaaggcagcc
atggtgctgctttgtcttgatcaacatcacgctgagacttgtgttcatac
aggttcacttccccagcagacagtctgtccgtctgtccttccttccttcc
ttccttccttccttccttccttccttccttctctccctctctcctccctc
cttccttccttccctccctccatccctttctccctccctcccttcaattt
tctgtttctgactactgtccagatttgtttctgtgacaactatactttct
aaaaagagcattctacacttgtgggattcacttagcatcatgcagcaggc
acttagcatattgtacctggcacagtccaaggtatcatctactactttat
tgagcctgctttggtaaagataatttttaaccttatgaatttcacatttc
ctggtctcttttagcactccattcttttcgaatcctttgagcatctggct
gtattaaccacatctccttgaaaatggactcccctggaaacaattcccta
attctactttaaaccccaccatcctcttattcatcctccaccttagcata
ctccttagatattagaattctcctgtgatcatcctgtttcgtcttctcag
cccttcctatactctaggcttcagttctcgagactgaatacttagctgtc
aatctctgtactctccaactgtctttgatatcttctaactatatttttca
cttgacgctgggtatctcggagtgagagctccaaatttctccaaaacaaa
caaacaaacaaacaaacaaacaaacatgtacaagtcaagctcattttata
tttctctataagtacatcttcttcccttcttggcaagtggttccagtgtc
tgctgggcattgtggggtaagagaccctcgaattgcttggccttttctag
ctggggtcagtcctagagtc
tgcacagaatctgacccctaattagaagctgcctctactccagctgaact
gttgccctgcatggtatttggagttcagtctgtctgtctggttggattgt
tatcacagccttcagcatccaatgttgccgccctttgtgcatagttcccc
tttgctgagagtgtagaatcttgtcatcaggcttggattcccagtgccta
gtttccaatgcaagttcaataaagatttgcttcttccataaggattttaa
tgtcctctgctcctatttaacacattgaatagcactgtcttcttcctgtg
tggcttttttgtgtatggttagttctgaatggtatttccatgcctgtgtg
gatactcttcttagggagttataagattgttttgaatgacttcatcaaca
atttggttagatataacagattgacataaatatttcccttttccacatat
attctctctctctgtctctgtctctctgtctctgtctctttgtctctgtc
tccgtctctctctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_53918727_53919803
seq2: B6Ng01-131C07.b_44_1113

seq1  GAATTCTGACCTTCTCCCTACACCTTTAAACTTATCTGTAGTGGCAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACCTTCTCCCTACACCTTTAAACTTATCTGTAGTGGCAGATA  50

seq1  CCTATTTCCTTTCATGTGTCATCCATGGGTCTAACTGCTCCAAATGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTCCTTTCATGTGTCATCCATGGGTCTAACTGCTCCAAATGCTGA  100

seq1  TCTGAGCCTTTGCCTGTGGTGTGCTGCCTTGCAAGAGCTGGAAGGCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCCTTTGCCTGTGGTGTGCTGCCTTGCAAGAGCTGGAAGGCAGCC  150

seq1  ATGGTGCTGCTTTGTCTTGATCAACATCACGCTGAGACTTGTGTTCATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCTGCTTTGTCTTGATCAACATCACGCTGAGACTTGTGTTCATAC  200

seq1  AGGTTCACTTCCCCAGCAGACAGTCTGTCCGTCTGTCCTTCCTTCCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCACTTCCCCAGCAGACAGTCTGTCCGTCTGTCCTTCCTTCCTTCC  250

seq1  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTCTCCCTCTCTCCTCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTCTCCCTCTCTCCTCCCTC  300

seq1  CTTCCTTCCTTCCCTCCCTCCATCCCTTTCTCCCTCCCTCCCTTCAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTTCCCTCCCTCCATCCCTTTCTCCCTCCCTCCCTTCAATTT  350

seq1  TCTGTTTCTGACTACTGTCCAGATTTGTTTCTGTGACAACTATACTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCTGACTACTGTCCAGATTTGTTTCTGTGACAACTATACTTTCT  400

seq1  AAAAAGAGCATTCTACACTTGTGGGATTCACTTAGCATCATGCAGCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGCATTCTACACTTGTGGGATTCACTTAGCATCATGCAGCAGGC  450

seq1  ACTTAGCATATTGTACCTGGCACAGTCCAAGGTATCATCTACTACTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCATATTGTACCTGGCACAGTCCAAGGTATCATCTACTACTTTAT  500

seq1  TGAGCCTGCTTTGGTAAAGATAATTTTTAACCTTATGAATTTCACATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGCTTTGGTAAAGATAATTTTTAACCTTATGAATTTCACATTTC  550

seq1  CTGGTCTCTTTTAGCACTCCATTCTTTTCGAATCCTTTGAGCATCTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTCTTTTAGCACTCCATTCTTTTCGAATCCTTTGAGCATCTGGCT  600

seq1  GTATTAACCACATCTCCTTGAAAATGGACTCCCCTGGAAACAATTCCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAACCACATCTCCTTGAAAATGGACTCCCCTGGAAACAATTCCCTA  650

seq1  ATTCTACTTTAAACCCCACCATCCTCTTATTCATCCTCCACCTTAGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACTTTAAACCCCACCATCCTCTTATTCATCCTCCACCTTAGCATA  700

seq1  CTCCTTAGATATTAGAATTCTCCTGTGATCATCCTGTTTCGTCTTCTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAGATATTAGAATTCTCCTGTGATCATCCTGTTTCGTCTTCTCAG  750

seq1  CCCTTCCTATACTCTAGGCTTCAGTTCTCGAGACTGAATACTTAGCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTATACTCTAGGCTTCAGTTCTCGAGACTGAATACTTAGCTGTC  800

seq1  AATCTCTGTACTCTCCAACTGTCTTTGATATCTTCTAACTATATTTTTCC  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATCTCTGTACTCTCCAACTGTCTTTGATATCTTCTAACTATATTTTT-C  849

seq1  ACTTGACGCTGGGTATCTCGGAGTGAGAGCTCCCAAATTTCTCCAAAACA  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTTGACGCTGGGTATCTCGGAGTGAGAGCT-CCAAATTTCTCCAAAACA  898

seq1  AACAAACAAACAAACAAACAAACAAACATGTAACAAGTCAAGCTCATTTT  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACAAACAAACAAACAAACAAACAAACATGT-ACAAGTCAAGCTCATTTT  947

seq1  ATATTTCTCTATAAGTTACATCTTCTTCCCTTCTTGGCAAGTGGTTCCAG  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATATTTCTCTATAAG-TACATCTTCTTCCCTTCTTGGCAAGTGGTTCCAG  996

seq1  TGTCTGCTGGGCATTGT-GGGTAAGAAGACCCTCGAATTTGCCTTGGCTT  1049
      ||||||||||||||||| ||||||| |||||||||||||   |||||| |
seq2  TGTCTGCTGGGCATTGTGGGGTAAG-AGACCCTCGAATT--GCTTGGCCT  1043

seq1  TTTCTTAGCTGGGCTCAGTCCTAAAGTC  1077
      |||| |||||||| ||||||||| ||||
seq2  TTTC-TAGCTGGGGTCAGTCCTAGAGTC  1070

seq1: chr1_54068694_54069239
seq2: B6Ng01-131C07.g_68_613 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGGAGACAGAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGGAGACAGAGACA  50

seq1  AAGAGACAGAGACAGAGAGACAGAGACAGAGAGAGAGAATATATGTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACAGAGACAGAGAGACAGAGACAGAGAGAGAGAATATATGTGGAA  100

seq1  AAGGGAAATATTTATGTCAATCTGTTATATCTAACCAAATTGTTGATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAATATTTATGTCAATCTGTTATATCTAACCAAATTGTTGATGAA  150

seq1  GTCATTCAAAACAATCTTATAACTCCCTAAGAAGAGTATCCACACAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCAAAACAATCTTATAACTCCCTAAGAAGAGTATCCACACAGGCA  200

seq1  TGGAAATACCATTCAGAACTAACCATACACAAAAAAGCCACACAGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATACCATTCAGAACTAACCATACACAAAAAAGCCACACAGGAAGA  250

seq1  AGACAGTGCTATTCAATGTGTTAAATAGGAGCAGAGGACATTAAAATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTGCTATTCAATGTGTTAAATAGGAGCAGAGGACATTAAAATCCT  300

seq1  TATGGAAGAAGCAAATCTTTATTGAACTTGCATTGGAAACTAGGCACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGAAGCAAATCTTTATTGAACTTGCATTGGAAACTAGGCACTGG  350

seq1  GAATCCAAGCCTGATGACAAGATTCTACACTCTCAGCAAAGGGGAACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAAGCCTGATGACAAGATTCTACACTCTCAGCAAAGGGGAACTAT  400

seq1  GCACAAAGGGCGGCAACATTGGATGCTGAAGGCTGTGATAACAATCCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGGGCGGCAACATTGGATGCTGAAGGCTGTGATAACAATCCAAC  450

seq1  CAGACAGACAGACTGAACTCCAAATACCATGCAGGGCAACAGTTCAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACAGACTGAACTCCAAATACCATGCAGGGCAACAGTTCAGCTG  500

seq1  GAGTAGAGGCAGCTTCTAATTAGGGGTCAGATTCTGTGCAGAATTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGGCAGCTTCTAATTAGGGGTCAGATTCTGTGCAGAATTC  546