BAC Information

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BAC

Clone NameB6Ng01-132K11
Chromosome1 (Build37)
Map Location 106,773,956 - 106,774,995
singlet/doubletsinglet
Overlap geneCdh20
Upstream geneLOC383546, LOC100041134
Downstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132K11.bB6Ng01-132K11.g
ACCDH933403DH933404
length1,1501,031
definitionDH933403|Mus musculus domesticus DNA, BAC clone: B6Ng01-132K11, 5' end.DH933404|Mus musculus domesticus DNA, BAC clone: B6Ng01-132K11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaccacgaaacttctacagctgagaagccctttcagcaatgtag
ctggatataaaattaactcacaaaaattcgtagcctttctatacatagat
gacaaacggactgagaaagaaatcaaagaaactgcacatttcacagaagg
cttatgtaatataaaatattttctgggtaactgtaaccaaacaagtaaaa
gacttgtatgataaatatattaagttactgaagaaagaaactgaagaaga
cagcagaagatggaaagatctcctgtgctcacggatagagttaatatagt
aaaaatggccatctgaccaaaagcaatctatagattccgtacaatcacca
tcaaaattccaacataatttcttcacagatcttagtggctacacagagcc
tctgcccttatgtgctaaatgccatttgtatagaaggtgctctgtgtgat
accaaaggaaaaaagtaaacaccaactcttcactctacaatttatgtcct
tcctgctagatatgctagtgcaatggtggcacaaaacttgtagaaataat
cctccaatatcttatgtaacctaagacctactccatgagaggggagccca
aacctaacagtgactaagtgactaagaaccggagactagatagataaccc
agtgacctacggtaaaaccaaacgctactgttctattaaaagaacgtagc
agtaaaacatatcctaaagatgttctgctctactcataggtcagtgcctt
gcctcagccatcattagtgaagctgcttcctgcagcagatgtgaccaata
cagagacccattgtcaggcatatgcagagagtgagagaccttggaatact
tagctctaaatgggatttaccaaattcctctcacagcctggagacttgaa
gaagagtagcagaagtgtagagcacaggatggagacatcagaaacagtcg
tctaatcatctatcaagtcattgcctccctaaaccaggaggagagccgcg
ctgcgcatgcagccaccagagcagcaaggctgctgattccaccaagtagc
tatgtgaagatggatagctcctcacaacactcgactgtacctgcatggat
tttttctcaggtcgacttcaggatcatgcagacgcctgatagactctact

gaattcatttttgtcctctgaatgccaggcatttataaaagtgatttgta
tactgtgtctagaaagctttggtactttgtatttccatgaaaatattcag
agtacaatttattgccatgactttcttctcctctgggaattatctataca
ttttatacacagtgttttcaggcagggtaagatgagccattaagcacatg
gaatctcaagatggagtatactaagtcacttgcatttggcacagattatt
cagctgaagacaggctttgagcaggaatgtgcatgggtagtaaaaaaagt
attcagagttagaaactgggaccaatgttaatccaatgggagctgttcaa
ttcaactggcttccagcacttccgtacttaagcttactacatttctgcct
ttgtttatttcctccctgcctattttactctgcactaactctctgtcttt
tgttatttttctccatgcctctttgttttttgtttgtttctttgtttgtt
tggttggttggttgtttttttttttaaatctccttgactcctctaatatt
gatggctcctaatgaacataatgaatttcatccctggcattacatttgct
tgtgtatatggtgataacagaaaagagaggggccaataggatagaaggag
agcctagacagagaactgtctctctcaagcacatatgctctgtgcagaga
ttcccaacatgctcaacccaggaggacagacagggcccacctgaaacaac
caatctgactaaatacatctacagtgcttccattttaaactcatttcaag
ccagttcatctgataaatgattgccaatgctgaaatactagtgtatcaaa
gtgatttttgtgactgtcacagttcccagctcataaagtgacagtgtcaa
aggaaggcctgtcatcgaagaagcagcaggaaagcgatgtctgcattctg
aatcttagatggaaaggaaacagtggggtgctcacaagctctttttcttt
gtagctatacaatcaagcaggtttctccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_106773956_106774995
seq2: B6Ng01-132K11.g_68_1098

seq1  GAATTCATTTTTGTCCTCTGAATGCCAGGCATTTATAAAAGTGATTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTGTCCTCTGAATGCCAGGCATTTATAAAAGTGATTTGTA  50

seq1  TACTGTGTCTAGAAAGCTTTGGTACTTTGTATTTCCATGAAAATATTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTCTAGAAAGCTTTGGTACTTTGTATTTCCATGAAAATATTCAG  100

seq1  AGTACAATTTATTGCCATGACTTTCTTCTCCTCTGGGAATTATCTATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAATTTATTGCCATGACTTTCTTCTCCTCTGGGAATTATCTATACA  150

seq1  TTTTATACACAGTGTTTTCAGGCAGGGTAAGATGAGCCATTAAGCACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACACAGTGTTTTCAGGCAGGGTAAGATGAGCCATTAAGCACATG  200

seq1  GAATCTCAAGATGGAGTATACTAAGTCACTTGCATTTGGCACAGATTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCAAGATGGAGTATACTAAGTCACTTGCATTTGGCACAGATTATT  250

seq1  CAGCTGAAGACAGGCTTTGAGCAGGAATGTGCATGGGTAGTAAAAAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAAGACAGGCTTTGAGCAGGAATGTGCATGGGTAGTAAAAAAAGT  300

seq1  ATTCAGAGTTAGAAACTGGGACCAATGTTAATCCAATGGGAGCTGTTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGTTAGAAACTGGGACCAATGTTAATCCAATGGGAGCTGTTCAA  350

seq1  TTCAACTGGCTTCCAGCACTTCCGTACTTAAGCTTACTACATTTCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTGGCTTCCAGCACTTCCGTACTTAAGCTTACTACATTTCTGCCT  400

seq1  TTGTTTATTTCCTCCCTGCCTATTTTACTCTGCACTAACTCTCTGTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATTTCCTCCCTGCCTATTTTACTCTGCACTAACTCTCTGTCTTT  450

seq1  TGTTATTTTTCTCCATGCCTCTTTGTTTTTTGTTTGTTTCTTTGTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTTCTCCATGCCTCTTTGTTTTTTGTTTGTTTCTTTGTTTGTT  500

seq1  TGGTTGGTTGGTTGTTTTTTTTTTTAAATCTCCTTGACTCCTCTAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTTGGTTGTTTTTTTTTTTAAATCTCCTTGACTCCTCTAATATT  550

seq1  GATGGCTCCTAATGAACATAATGAATTTCATCCCTGGCATTACATTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCCTAATGAACATAATGAATTTCATCCCTGGCATTACATTTGCT  600

seq1  TGTGTATATGGTGATAACAGAAAAGAGAGGGGCCAATAGGATAGAAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATATGGTGATAACAGAAAAGAGAGGGGCCAATAGGATAGAAGGAG  650

seq1  AGCCTAGACAGAGAACTGTCTCTCTCAAGCACATATGCTCTGTGCAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGACAGAGAACTGTCTCTCTCAAGCACATATGCTCTGTGCAGAGA  700

seq1  TTCCCAACATGCTCAACCCAGGAGGACAGACAGGGCCCACCTGAAACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAACATGCTCAACCCAGGAGGACAGACAGGGCCCACCTGAAACAAC  750

seq1  CAATCTGACTAAATACATCTACAGTGCTTCCAATTTTAAAACTCATTTCA  800
      ||||||||||||||||||||||||||||||||  ||| ||||||||||||
seq2  CAATCTGACTAAATACATCTACAGTGCTTCCA--TTTTAAACTCATTTCA  798

seq1  AGCCAGTTCATCTGATAAATGATTGCCAATGCTGAAATACTAAGTGTATC  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCCAGTTCATCTGATAAATGATTGCCAATGCTGAAATACT-AGTGTATC  847

seq1  AAAGTGATTTTTGTGACTGTCACAGTTCCCAGCTCATAAAGTGACAGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAGTGATTTTTGTGACTGTCACAGTTCCCAGCTCATAAAGTGACAGTG-  896

seq1  TCAAAGGAAGGCCTGTCATCGAAGAAAGCAGCAGGAAAAGCGATGTCTGC  950
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  TCAAAGGAAGGCCTGTCATCGAAG-AAGCAGCAGG-AAAGCGATGTCTGC  944

seq1  ATTCTGAAATCTCAGATGGAAAGGAAAACAGTGGGGTGCTCAC-AGCTC-  998
      |||||| ||||| ||||||||||| |||||||||||||||||| ||||| 
seq2  ATTCTG-AATCTTAGATGGAAAGG-AAACAGTGGGGTGCTCACAAGCTCT  992

seq1  TTTTCTTTGTAGCATATTACAATCAAGGCAAGTTTCTCCATT  1040
      ||||||||||||| || ||||||||| ||| |||||||||||
seq2  TTTTCTTTGTAGC-TA-TACAATCAA-GCAGGTTTCTCCATT  1031