BAC Information

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BAC

Clone NameB6Ng01-132N10
Chromosome1 (Build37)
Map Location 174,828,983 - 174,981,814
singlet/doubletdoublet
Overlap geneOlfr16
Upstream geneSlamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs
Downstream geneGA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132N10.bB6Ng01-132N10.g
ACCDH933541DH933542
length1,0261,018
definitionDH933541|Mus musculus domesticus DNA, BAC clone: B6Ng01-132N10, 5' end.DH933542|Mus musculus domesticus DNA, BAC clone: B6Ng01-132N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,828,983 - 174,830,001)(174,980,790 - 174,981,814)
sequence
gaattcaaccttagcaggatggtagttgaaagagcaaaagagacacttcc
tatgtttcagtaattctgataagggacaaatgaaaaggatcatcttctct
ccggggagttctcaatccaatgtgtagttccccttagattacacattgtc
tcttcctaacacagggatttgttctctttttctcatgccctactatttca
tccagagattaggactgacctttctagaaaactgtctctttcagactcta
gacaccaggccccaggaggctggctgacttctgcttcttctctgttttgg
catcctctcatagtacctgtttactttctatgtcctattggtacttcatt
aagtggttatcatcccactgggatctatcctcatgaatggattcagatca
ctattacaagagtatgttagccatagaagtgagtttggccccttcttttc
ccttcttgtatacttcttttccatgtaatacctttggctatgaggtagca
agaccaccattacatgtgaaactccttgacctgagatttctctgcctcca
taaccatgagacaaataaacttcttttgtttataaactaagatttataaa
aagcacaaggcaaaagcaactagggtatctgacagagaagatgtctaggt
agttaagcatgcaaggtgtagccatggcttcttctgtctgtttatatata
gtaaggtagtagaaaggggatatatttaaggaaggaatctgttattaaaa
tggaaacgcataaccttttggtatcaatgtagggaaagtctagggattac
atagcatttgtgatcagaatcctggttaagacacagtgaatgacattttg
aagaagttgcagatggaattgaatgtcagagaatctactgacagttgaag
gatgtagaggataaagtccattttctttgaggcttgatccttcttaggct
aaccatacttcatagatggttctataaccatcatatgtgggtatactaat
tagactcagtgggctatagtaaaaga
gaattctgaagtgaaaatctacacaatagcatgcaaaagaatgacaggca
gaatgaaaaatgacccgctgtgttgactccattacatgagtaataagcaa
aagaacataagaccagaagggtaaggagggtcagactgtgtagaataagt
atgccatgatacttatttaacttttagacagtgggaattgcctatggaag
tggattataaagcttttctagggactcatgtcactgttagaaatgcctag
gaaactatgttatagtcagagaaactaagattctgatgagacatagaaga
agatgactctggttttgagggaatatacagatatatattttttaatttat
ttttttattaggtatttttctcgtttacattttcaatgctatcccaaaag
tcccccatacccacccccccaatcccctacccacccactccccctttttg
gccctggggttacagatatatttatatacttaaatcaaaactgagcctac
cagtctgaggggtagggcagtgagtctggtcagggagtactgttgagatt
tggggtgtggtgccgataagggctcagaagagtttgacatcatgttagtg
aatgggctaacccagacctcagacctcctgacatattaggaaataccttc
tactagaaagacgtgtgtgtccagatcagaaaggctttaaaagaaagata
caaagacccaaaagatcagccatctttgaactttacatgacagcatgcta
aaatctttttcagaattaatagaaacaatgacaaaaaatcaaactatacc
taaaattgtctgagaacaagataggttgctaacaacaggggttgtgacta
ggaaataaaagtccacattaaaagcagagcattacaggcaaagattttga
cagtcacacattaaatcttcatgggattttatctcatatgacatgctgta
tacctgagacttctgaatggacttctgcacattaccttataataagtgtt
ctttccccagggaagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174828983_174830001
seq2: B6Ng01-132N10.b_46_1060

seq1  GAATTCAACCTTAGCAGGATGGTAGTTGAAAGAGCAAAAGAGACACTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTTAGCAGGATGGTAGTTGAAAGAGCAAAAGAGACACTTCC  50

seq1  TATGTTTCAGTAATTCTGATAAGGGACAAATGAAAAGGATCATCTTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCAGTAATTCTGATAAGGGACAAATGAAAAGGATCATCTTCTCT  100

seq1  CCGGGGAGTTCTCAATCCAATGTGTAGTTCCCCTTAGATTACACATTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGAGTTCTCAATCCAATGTGTAGTTCCCCTTAGATTACACATTGTC  150

seq1  TCTTCCTAACACAGGGATTTGTTCTCTTTTTCTCATGCCCTACTATTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTAACACAGGGATTTGTTCTCTTTTTCTCATGCCCTACTATTTCA  200

seq1  TCCAGAGATTAGGACTGACCTTTCTAGAAAACTGTCTCTTTCAGACTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGATTAGGACTGACCTTTCTAGAAAACTGTCTCTTTCAGACTCTA  250

seq1  GACACCAGGCCCCAGGAGGCTGGCTGACTTCTGCTTCTTCTCTGTTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAGGCCCCAGGAGGCTGGCTGACTTCTGCTTCTTCTCTGTTTTGG  300

seq1  CATCCTCTCATAGTACCTGTTTACTTTCTATGTCCTATTGGTACTTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTCATAGTACCTGTTTACTTTCTATGTCCTATTGGTACTTCATT  350

seq1  AAGTGGTTATCATCCCACTGGGATCTATCCTCATGAATGGATTCAGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTTATCATCCCACTGGGATCTATCCTCATGAATGGATTCAGATCA  400

seq1  CTATTACAAGAGTATGTTAGCCATAGAAGTGAGTTTGGCCCCTTCTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACAAGAGTATGTTAGCCATAGAAGTGAGTTTGGCCCCTTCTTTTC  450

seq1  CCTTCTTGTATACTTCTTTTCCATGTAATACCTTTGGCTATGAGGTAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTGTATACTTCTTTTCCATGTAATACCTTTGGCTATGAGGTAGCA  500

seq1  AGACCACCATTACATGTGAAACTCCTTGACCTGAGATTTCTCTGCCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACCATTACATGTGAAACTCCTTGACCTGAGATTTCTCTGCCTCCA  550

seq1  TAACCATGAGACAAATAAACTTCTTTTGTTTATAAACTAAGATTTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATGAGACAAATAAACTTCTTTTGTTTATAAACTAAGATTTATAAA  600

seq1  AAGCACAAGGCAAAAGCAACTAGGGTATCTGACAGAGAAGATGTCTAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAAGGCAAAAGCAACTAGGGTATCTGACAGAGAAGATGTCTAGGT  650

seq1  AGTTAAGCATGCAAGGTGTAGCCATGGCTTCTTCTGTCTGTTTATATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGCATGCAAGGTGTAGCCATGGCTTCTTCTGTCTGTTTATATATA  700

seq1  GTAAGGTAGTAGAAAGGGGATATATTTAAGGAAGGAATCTGTTATTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGTAGTAGAAAGGGGATATATTTAAGGAAGGAATCTGTTATTAAAA  750

seq1  TGGAAACGCATAACCTTTTGGTATCAATGTAGGGAAAGTCTAGGGATTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACGCATAACCTTTTGGTATCAATGTAGGGAAAGTCTAGGGATTAC  800

seq1  ATAGCATTTGTGATCAGAATCCTGGTTAAGACACAGTGAATGACATTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATTTGTGATCAGAATCCTGGTTAAGACACAGTGAATGACATTTTG  850

seq1  AAGAAGTTGCAGATGGAATTGAATGTCAGAGAATCTACTGACAGTTGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTGCAGATGGAATTGAATGTCAGAGAATCTACTGACAGTTGAAG  900

seq1  GATGTTAGAGGATAAAGTCCATTTTCTTTGAGGGCTTGATCCTTCTTAGG  950
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  GATG-TAGAGGATAAAGTCCATTTTCTTTGA-GGCTTGATCCTTCTTAGG  948

seq1  CTAACCATACTTCAATAGATGGTTCTATAACCATCCATATGTGGGTATAC  1000
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  CTAACCATACTTC-ATAGATGGTTCTATAACCAT-CATATGTGGGTATAC  996

seq1  TAATTAGACTCAGTGGGCT  1019
      |||||||||||||||||||
seq2  TAATTAGACTCAGTGGGCT  1015

seq1: chr1_174980790_174981814
seq2: B6Ng01-132N10.g_69_1086 (reverse)

seq1  CTGCTTCCCTTGTGAGAGAAGAACACCTATTATAAGGGTAATGTGCAG-A  49
      |||||||||| | ||   |||||||| |||||||| |||||||||||| |
seq2  CTGCTTCCCTGGGGA---AAGAACACTTATTATAA-GGTAATGTGCAGAA  46

seq1  GTCCATTTCAGAAGTCTCATGTATAACAGCATGTCATATGAGATAAAAAT  99
      ||||| ||||||||||||| |||| ||||||||||||||||||| |||||
seq2  GTCCA-TTCAGAAGTCTCAGGTAT-ACAGCATGTCATATGAGAT-AAAAT  93

seq1  TCCATGAAGATTTAATGTGTGACTGTCAAAATCTTTGCCTGTAATGCTCT  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAAGATTTAATGTGTGACTGTCAAAATCTTTGCCTGTAATGCTCT  143

seq1  GCTTTTAATTGTGGACTTTTTATTTCCTAGTCAACAACCCCTGTTGTTAG  199
      |||||||| ||||||| ||||||||||||||| |||||||||||||||||
seq2  GCTTTTAA-TGTGGAC-TTTTATTTCCTAGTC-ACAACCCCTGTTGTTAG  190

seq1  CAACCTATCTTGTTCTCAGACAATTTTAGGTATAGTTTGATTTTTTGTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTATCTTGTTCTCAGACAATTTTAGGTATAGTTTGATTTTTTGTCA  240

seq1  TTGTTTCTATTAATTCTG-AAAAGATTTTAGCATGCTGTCATGTAAAGTT  298
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGTTTCTATTAATTCTGAAAAAGATTTTAGCATGCTGTCATGTAAAGTT  290

seq1  CAAAGATGGCTGATC-TTTGGGTCTTTGTATCTTTCTTTTAAAGCCTTTC  347
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAAAGATGGCTGATCTTTTGGGTCTTTGTATCTTTCTTTTAAAGCCTTTC  340

seq1  TGATCTGGACACACACGTCTTTCTAGTAGAAGGTATTTCCTAATATGTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGGACACACACGTCTTTCTAGTAGAAGGTATTTCCTAATATGTCA  390

seq1  GGAGGTCTGAGGTCTGGGTTAGCCCATTCACTAACATGATGTCAAACTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCTGAGGTCTGGGTTAGCCCATTCACTAACATGATGTCAAACTCT  440

seq1  TCTGAGCCCTTATCGGCACCACACCCCAAATCTCAACAGTACTCCCTGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCCCTTATCGGCACCACACCCCAAATCTCAACAGTACTCCCTGAC  490

seq1  CAGACTCACTGCCCTACCCCTCAGACTGGTAGGCTCAGTTTTGATTTAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCACTGCCCTACCCCTCAGACTGGTAGGCTCAGTTTTGATTTAAG  540

seq1  TATATAAATATATCTGTAACCCCAGGGCCAAAAAGGGGGAGTGGGTGGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAATATATCTGTAACCCCAGGGCCAAAAAGGGGGAGTGGGTGGGT  590

seq1  AGGGGATTGGGGGGGTGGGTATGGGGGACTTTTGGGATAGCATTGAAAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATTGGGGGGGTGGGTATGGGGGACTTTTGGGATAGCATTGAAAAT  640

seq1  GTAAACGAGAAAAATACCTAATAAAAAAATAAATTAAAAAATATATATCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACGAGAAAAATACCTAATAAAAAAATAAATTAAAAAATATATATCT  690

seq1  GTATATTCCCTCAAAACCAGAGTCATCTTCTTCTATGTCTCATCAGAATC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTCCCTCAAAACCAGAGTCATCTTCTTCTATGTCTCATCAGAATC  740

seq1  TTAGTTTCTCTGACTATAACATAGTTTCCTAGGCATTTCTAACAGTGACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTCTCTGACTATAACATAGTTTCCTAGGCATTTCTAACAGTGACA  790

seq1  TGAGTCCCTAGAAAAGCTTTATAATCCACTTCCATAGGCAATTCCCACTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCCTAGAAAAGCTTTATAATCCACTTCCATAGGCAATTCCCACTG  840

seq1  TCTAAAAGTTAAATAAGTATCATGGCATACTTATTCTACACAGTCTGACC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAGTTAAATAAGTATCATGGCATACTTATTCTACACAGTCTGACC  890

seq1  CTCCTTACCCTTCTGGTCTTATGTTCTTTTGCTTATTACTCATGTAATGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTACCCTTCTGGTCTTATGTTCTTTTGCTTATTACTCATGTAATGG  940

seq1  AGTCAACACAGCGGGTCATTTTTCATTCTGCCTGTCATTCTTTTGCATGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACACAGCGGGTCATTTTTCATTCTGCCTGTCATTCTTTTGCATGC  990

seq1  TATTGTGTAGATTTTCACTTCAGAATTC  1025
      ||||||||||||||||||||||||||||
seq2  TATTGTGTAGATTTTCACTTCAGAATTC  1018