BAC Information

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BAC

Clone NameB6Ng01-133O01
Chromosome1 (Build37)
Map Location 98,321,961 - 98,422,407
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133O01.bB6Ng01-133O01.g
ACCDH934315DH934316
length1,2081,168
definitionDH934315|Mus musculus domesticus DNA, BAC clone: B6Ng01-133O01, 5' end.DH934316|Mus musculus domesticus DNA, BAC clone: B6Ng01-133O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,321,961 - 98,323,208)(98,421,230 - 98,422,407)
sequence
gaattccatagttataaaaagctagcaattaaggtataagtataaaagaa
gtgaaacaacaatttagaatttcctaaaaactccatacgatatgttttaa
agatgctaatacctgactgacgcaaacacatgaagaacctaagtatatcc
ttgctactaaatttagaaatgttttaacttcttacttctttctttttgtg
tcacatggatgtgtttctgcatgtgcttgagtcagctgaaaatctcatgt
gctgtccgcagaaaccctatcagccttttttgaggtcaggcctctcactg
gtctgaagcacaataacaagccagactagctgccagaaagcctcaggagc
ttgcccatctctaccttcttagcacttgtaagcactgggcacaagacatg
gcaattttatgtgttttctgaggattgaacttagattctcatacctgtaa
aatgagcactttgcgcactgaactatctgcccagtctcaccctttttatt
cttctattttattcttgaaatgtttcattactcatatatttaaatttttt
ctccaacagatctagaaccttgccaatctggagttttaatatgaacatag
tataaggtaataacaaagatgtcacctttcttatttctaggggatgttta
taaagagtcccaatatgggtgaatagaagcaagataaatgcatcaatata
atagaagccttgtctctaaggccgagatgagcattttgtgatctgtcact
tttacaggtataattttcataaactgggtttacttaaggtgaatagttga
gaatataactaaatggaacatttgtgacttgaaaatgtgaatcaatggat
acttactcttagaggcttcacggagtaaaggaaaaataatgaatctaatt
cacatctgacctgcatctgctccgtgtaatataagtaattgatctctact
ctgcaaggacataatatctttctcatattctctcaaagcttttcatcaca
tgtatgggtacttgagaaatgatcactcataacaactatcaaatgcatgt
acttatattgagactacaatagagagtcagaaaagggattttaactcttc
ttggaaattagtatacttgtttgttatgtcactggaacttaagtactata
cttacttgtgttccgatactgcgactttacttgaaaactgggtcaaatat
gggtgaac
gaattcatgtagtttttattcatttggaatgacattctcagagtaaatta
attgcaaatctcaagcaaagggcaagtgtaaaactaaggtaacagaaatg
tccctaaaagtgatttagagaaactcaattactaaactcatcaatataac
ctgatatatcccatcaaaaactctcaactttggcaaattatcacttgtca
agcttagaatgagagtgtgatgtacatattatcagattgaaagacaaatt
tttctctccataaactgctacttgttgtggaaatgccagtctttatttct
gataagaaatatttggttcaagcattatagaaaaactcccgtgtaatgaa
gatttttagtagtgaagaccatatatatatatatataatatatatactat
atatatattatatatataatacacctatacacctatatatacatacatta
ggttgtgattatgtattaccattatcactgtgattacatgtatataatga
tacatttctttttacatatatataataacagatttttcaaaagattttat
ataagtatatatagaacacacatatacacacccagaggggtgctttctaa
agaaaaaaaaaacaatgcttctataaagaaatctaattattataagaatg
cctatgtctgtcatactggcattagtcaccttatcatggcagatatttgt
agtctagagagctaggcgatttatgttcaggtcacgcaattactgcagta
aagtatattctcctctcaggagtgaaattggctccttttgttgaggactg
gctagcttctctccaaaccagaagagaataatggtggtagctttggaaaa
gaacatggattgattaatattttctttccatattctcttttttttttgaa
gaaaatcctctcccttcacaattctctattcaaatgaaggcaaatgctgc
ctttatttcacatacgattattattaatgaaaaagaatctttcatttttt
gatgaaaaaggattactctacttaacatagtcatttaatttttgaattaa
ctgctctctaatagaatagtatgtagtagatccaggatatatatattgga
aatgttatgggagctatccctttcgctgcatgactgaactatcagaatcc
gaatttggaatgtttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_98321961_98323208
seq2: B6Ng01-133O01.b_49_1256

seq1  GAATTCCATAGTTATAAAAAGCTAGCAATTAAGGTATAAGTATAAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGTTATAAAAAGCTAGCAATTAAGGTATAAGTATAAAAGAA  50

seq1  GTGAAACAACAATTTAGAATTTCCTAAAAACTCCATACGATATGTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACAACAATTTAGAATTTCCTAAAAACTCCATACGATATGTTTTAA  100

seq1  AGATGCTAATACCTGACTGACGCAAACACATGAAGAACCTAAGTATATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTAATACCTGACTGACGCAAACACATGAAGAACCTAAGTATATCC  150

seq1  TTGCTACTAAATTTAGAAATGTTTTAACTTCTTACTTCTTTCTTTTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACTAAATTTAGAAATGTTTTAACTTCTTACTTCTTTCTTTTTGTG  200

seq1  TCACATGGATGTGTTTCTGCATGTGCTTGAGTCAGCTGAAAATCTCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGGATGTGTTTCTGCATGTGCTTGAGTCAGCTGAAAATCTCATGT  250

seq1  GCTGTCCGCAGAAACCCTATCAGCCTTTTTTGAGGTCAGGCCTCTCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCGCAGAAACCCTATCAGCCTTTTTTGAGGTCAGGCCTCTCACTG  300

seq1  GTCTGAAGCACAATAACAAGCCAGACTAGCTGCCAGAAAGCCTCAGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGCACAATAACAAGCCAGACTAGCTGCCAGAAAGCCTCAGGAGC  350

seq1  TTGCCCATCTCTACCTTCTTAGCACTTGTAAGCACTGGGCACAAGACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCATCTCTACCTTCTTAGCACTTGTAAGCACTGGGCACAAGACATG  400

seq1  GCAATTTTATGTGTTTTCTGAGGATTGAACTTAGATTCTCATACCTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTATGTGTTTTCTGAGGATTGAACTTAGATTCTCATACCTGTAA  450

seq1  AATGAGCACTTTGCGCACTGAACTATCTGCCCAGTCTCACCCTTTTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCACTTTGCGCACTGAACTATCTGCCCAGTCTCACCCTTTTTATT  500

seq1  CTTCTATTTTATTCTTGAAATGTTTCATTACTCATATATTTAAATTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATTTTATTCTTGAAATGTTTCATTACTCATATATTTAAATTTTTT  550

seq1  CTCCAACAGATCTAGAACCTTGCCAATCTGGAGTTTTAATATGAACATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACAGATCTAGAACCTTGCCAATCTGGAGTTTTAATATGAACATAG  600

seq1  TATAAGGTAATAACAAAGATGTCACCTTTCTTATTTCTAGGGGATGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGTAATAACAAAGATGTCACCTTTCTTATTTCTAGGGGATGTTTA  650

seq1  TAAAGAGTCCCAATATGGGTGAATAGAAGCAAGATAAATGCATCAATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTCCCAATATGGGTGAATAGAAGCAAGATAAATGCATCAATATA  700

seq1  ATAGAAGCCTTGTCTCTAAGGCCGAGATGAGCATTTTGTGATCTGTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCCTTGTCTCTAAGGCCGAGATGAGCATTTTGTGATCTGTCACT  750

seq1  TTTACAGGTATAATTTTCATAAACTGGGTTTACTTAAGGTGAATAGTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGGTATAATTTTCATAAACTGGGTTTACTTAAGGTGAATAGTTGA  800

seq1  GAATATAACTAAATGGAACATTTGTGACTTGAAAATGTGAATCAATGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAACTAAATGGAACATTTGTGACTTGAAAATGTGAATCAATGGAT  850

seq1  ACTTACTCTTAGAGGCTTCAGGGAGT-AAGGAAAAATAATGAATCTAATT  899
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  ACTTACTCTTAGAGGCTTCACGGAGTAAAGGAAAAATAATGAATCTAATT  900

seq1  CACATCTGACCTGCATCTGCTCCGTGTAATATAAGTAATTGATCTCTACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGACCTGCATCTGCTCCGTGTAATATAAGTAATTGATCTCTACT  950

seq1  CTGCAAGGACATAATTATCTTTCTTCATATTCCTCTCAAAAGCTTTTCAT  999
      |||||||||||||| |||||||| ||||||| ||||| ||||||||||||
seq2  CTGCAAGGACATAA-TATCTTTC-TCATATT-CTCTC-AAAGCTTTTCAT  996

seq1  CAACATGTATGGGTAACTTGGAGAAAATTGATCACTCATAACAACTTAAC  1049
      | |||||||||||| |||| ||||||  ||||||||||||||||||  | 
seq2  C-ACATGTATGGGT-ACTT-GAGAAA--TGATCACTCATAACAACT--AT  1039

seq1  CAAATTGCATGTTACTTATAATTGAGACCTACAATTAGAAGAGTCAAGAA  1099
      |||| |||||| ||||||| ||||||| |||||| ||| |||||| ||||
seq2  CAAA-TGCATG-TACTTAT-ATTGAGA-CTACAA-TAG-AGAGTC-AGAA  1082

seq1  AAGGGATTTTAAAACTCTCTTGGGAAATATTAAGGTATACTTGTTTGTTA  1149
      ||||||||||||  || |||||| || ||     ||||||||||||||||
seq2  AAGGGATTTTAACTCT-TCTTGGAAATTA-----GTATACTTGTTTGTTA  1126

seq1  TGTTCACTGAAACCTAAAGTAAAACTAATTACCTTTTACTCTGTGTCCAG  1199
      || |||||| || || ||||   ||||  |||   ||||| ||||| | |
seq2  TG-TCACTGGAA-CTTAAGT---ACTA--TAC---TTACT-TGTGTTCCG  1165

seq1  ATAACTGCAAGACTGTACTGGAGAACTGGGGTTCCAAATATGGGTGAAC  1248
      || |||||  |||| |||| || |||||||    |||||||||||||||
seq2  AT-ACTGC--GACTTTACTTGAAAACTGGG---TCAAATATGGGTGAAC  1208

seq1: chr1_98421230_98422407
seq2: B6Ng01-133O01.g_67_1234 (reverse)

seq1  AAGAACACATTCATAATTCGTATTCTGATAGTTCTAGTCATGCAAGCTGA  50
      ||||| ||||||  |||||| ||||||||||||| |||||||| ||| ||
seq2  AAGAA-ACATTCCAAATTCGGATTCTGATAGTTC-AGTCATGC-AGC-GA  46

seq1  ATGTGTATGCTCCCATAACATTTCAATTATATATATTTCCTGAATCTACT  100
      | | |   |||||||||||||||| |  |||||||| ||||| |||||||
seq2  AAGGGATAGCTCCCATAACATTTCCA--ATATATATATCCTGGATCTACT  94

seq1  ACATTACTATTCTATTAGAGAGCAGTTAATTC-AAAATTAAATGACTATG  149
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACA-TACTATTCTATTAGAGAGCAGTTAATTCAAAAATTAAATGACTATG  143

seq1  TTAAGT-GAGTTAATTCTTTTTCATCAAAAAATGAAAGATTCTTTTTCAT  198
      |||||| ||| |||| ||||||||||||||||||||||||||||||||| 
seq2  TTAAGTAGAG-TAATCCTTTTTCATCAAAAAATGAAAGATTCTTTTTCA-  191

seq1  TTTATTTATTTATTTGTATGTGAGAT-AAGGCAGCATCTGCC-TCATTTG  246
       ||| | |  || | |||||||| || |||||||||| |||| |||||||
seq2  -TTAATAA--TAATCGTATGTGAAATAAAGGCAGCATTTGCCTTCATTTG  238

seq1  AATAGAGAATTGTGAAGGGAGAGGATTTTCTTCAAAAAAAAAAGAGAATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGAATTGTGAAGGGAGAGGATTTTCTTCAAAAAAAAAAGAGAATA  288

seq1  TGGAAAGAAAATATTAATCAAATCCATGTTCTTTTCCAAAGCTACCACCA  346
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGGAAAGAAAATATTAATC-AATCCATGTTCTTTTCCAAAGCTACCACCA  337

seq1  TTATTCTCTTTCTGGTTTGGAGAGAAGCTAGCCAGTCCTCAACAAAAGGA  396
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTC-TTCTGGTTTGGAGAGAAGCTAGCCAGTCCTCAACAAAAGGA  386

seq1  GCCAATTTCACTCCTGAGAGGAGAATATACTTTACTGCAGTAATTGCGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTTCACTCCTGAGAGGAGAATATACTTTACTGCAGTAATTGCGTG  436

seq1  ACCTGAACATAAATCGCCTAGCTCTCTAGACTACAAATATCTGCCATGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAACATAAATCGCCTAGCTCTCTAGACTACAAATATCTGCCATGAT  486

seq1  AAGGTGACTAATGCCAGTATGACAGACATAGGCATTCTTATAATAATTAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGACTAATGCCAGTATGACAGACATAGGCATTCTTATAATAATTAG  536

seq1  ATTTCTTTATAGAAGCATTGTTTTTTTTTTCTTTAGAAAGCACCCCTCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTATAGAAGCATTGTTTTTTTTTTCTTTAGAAAGCACCCCTCTG  586

seq1  GGTGTGTATATGTGTGTTCTATATATACTTATATAAAATCTTTTGAAAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTATATGTGTGTTCTATATATACTTATATAAAATCTTTTGAAAAA  636

seq1  TCTGTTATTATATATATGTAAAAAGAAATGTATCATTATATACATGTAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATTATATATATGTAAAAAGAAATGTATCATTATATACATGTAAT  686

seq1  CACAGTGATAATGGTAATACATAATCACAACCTAATGTATGTATATATAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGATAATGGTAATACATAATCACAACCTAATGTATGTATATATAG  736

seq1  GTGTATAGGTGTATTATATATATAATATATATATAGTATATATATTATAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAGGTGTATTATATATATAATATATATATAGTATATATATTATAT  786

seq1  ATATATATATATGGTCTTCACTACTAAAAATCTTCATTACACGGGAGTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATGGTCTTCACTACTAAAAATCTTCATTACACGGGAGTTT  836

seq1  TTCTATAATGCTTGAACCAAATATTTCTTATCAGAAATAAAGACTGGCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAATGCTTGAACCAAATATTTCTTATCAGAAATAAAGACTGGCAT  886

seq1  TTCCACAACAAGTAGCAGTTTATGGAGAGAAAAATTTGTCTTTCAATCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAACAAGTAGCAGTTTATGGAGAGAAAAATTTGTCTTTCAATCTG  936

seq1  ATAATATGTACATCACACTCTCATTCTAAGCTTGACAAGTGATAATTTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATGTACATCACACTCTCATTCTAAGCTTGACAAGTGATAATTTGC  986

seq1  CAAAGTTGAGAGTTTTTGATGGGATATATCAGGTTATATTGATGAGTTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGAGAGTTTTTGATGGGATATATCAGGTTATATTGATGAGTTTA  1036

seq1  GTAATTGAGTTTCTCTAAATCACTTTTAGGGACATTTCTGTTACCTTAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGAGTTTCTCTAAATCACTTTTAGGGACATTTCTGTTACCTTAGT  1086

seq1  TTTACACTTGCCCTTTGCTTGAGATTTGCAATTAATTTACTCTGAGAATG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACTTGCCCTTTGCTTGAGATTTGCAATTAATTTACTCTGAGAATG  1136

seq1  TCATTCCAAATGAATAAAAACTACATGAATTC  1178
      ||||||||||||||||||||||||||||||||
seq2  TCATTCCAAATGAATAAAAACTACATGAATTC  1168