BAC Information

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BAC

Clone NameB6Ng01-135A03
Chromosome1 (Build37)
Map Location 91,049,299 - 91,160,444
singlet/doubletdoublet
Overlap geneSh3bp4, LOC383542
Upstream geneUgt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347
Downstream geneEG665688, Centg2, Gbx2, Asb18, Iqca, Cxcr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135A03.bB6Ng01-135A03.g
ACCDH935165DH935166
length1,1461,044
definitionDH935165|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A03, 5' end.DH935166|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,159,296 - 91,160,444)(91,049,299 - 91,050,366)
sequence
gaattcttcaaaaaagagatgttctcacagttggcaatttctcttgagtt
tatttatttattctgggtctgtatgggaggtagaaatatctttcctcaaa
accacatgtgggctcagcattgtcttgttagagattccagccagcttgtt
tttccccagcagcgtgtggtgggcagaatgagaggtggcacagcggcggc
ctcttctgccagcgctcagctggtcctgggtctgctgggtggcatatcct
actgagaagaatgctgtgcactctggatccagctagagaattagaggctt
ccctgggagaggaacagggcttggaaagttcccacaatcaagatgcccca
tctggtgggcacacctttcttttggcaatggccaggatggctatgagctt
tgtcagaaacagtggtgtagaaagctgtggactctgggaagagaggctgg
gtggtggggaactgtgctatgctggaggctccaggctgtgtttcatgggg
tcttctcattcccactggagactctccccatccagctgtgcctgccaagg
ggcagctgtccatccacttctccttgcaggttccctccgatgctgtgagt
gatagatctagcttcaccttcccatgatgtccctctggggtgacccacat
tgcagaggcatcagcagcttggaccagagctgcgtaacatcctgctgttg
ggacgacacatccaaatgcccatgatgtgtgctcgaagctcgggacttca
caccactcccgttgtttgacagaggggcatcattttgtcctctgttccct
tctcataaaaccaatgcatgccccaagtcagctcaagctgtccagcgtgt
gagctgaactctaggaagattcctatcaaaaatattttccaactttgatc
tgaactagaggtttcagaagctctgctgctgggcatagatacatttcact
ggagtgtctctgaagacacctgggtcctggtgataaaattgtggatgata
cttcggagtaaatggacattttgagttctgtggaaggagtctcaatttga
ggactatagggcatgacgaaggggaatgtctgggctgatctactgttata
agtctatcggtctatatctatagaactactggcacccttcgtaaaa
gaattcctgctatgttacctaacttcaacaaaggttgggtgtgctggagt
cctgcccagacactgcctgtttgtggaggtgaccctggaaagctgattca
gtctcacgaggcagggaagcaggaagtcccaagagggagggtgcgttctc
tatgcatgggcagtttctgatacacggcacgggtgaaagtgggtgctgta
aggcaggagagatccatctcatgactcggacacaggaggaccccaccctt
tccctagtgtaggctaggttgcactaagggctccacctgctgctgtgagt
gtcacaggagtgactgactgagggacctcaccatcctgacctttctcttt
ctttctttctttttttttttttttttaatgtttctgttcactgcatcacc
caggccatgtggaaacctgcctatgacttcttactcacctggagccacca
gattggggacagctaccgagatgtcatccaggagttgcacataggcctgg
acaagatgaagaaccccatcaccaggcgctggaagcacctcacagggaca
ctgatcctggtgaactcactggacatcctgagggcagctgccttcagtcc
cgcggaccatgatgactttgtgatctgagtgggatccctgccctactgct
cactggagttgggactctgcccaccagacctgggactccacccaccagag
cttgggactccacccaccagagctgggacttggcccatcatctctccaca
gtgggctgtgccatcaccgggtggtgcagggagggatggctgctcaggtc
gaggcctacctgccagccacgcccaggagggactgaggacttttgacttt
cttcccctcccctctatccaggggcaggtcccagggctttctacttccag
ttgccattgtgtgctttctatttgttgaaatgtacgttaaatttaaatca
ctttttaaacagaagacttagaggacgtagaaggtggtactattttgatg
gactgtaaaggtattaattttttcccttataaggcaatgctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_91159296_91160444
seq2: B6Ng01-135A03.b_51_1196 (reverse)

seq1  TTTTACGTAGGGTG-CAGTATGTCTATAGATATAGACGTATAGAACATTA  49
      ||||||| |||||| |||||  |||||||||||||||  |||||   |||
seq2  TTTTACGAAGGGTGCCAGTAGTTCTATAGATATAGACCGATAGA--CTTA  48

seq1  TAGACAGGTAGATCAGCCCAGACATTCCCCTTCGTCATGCCC-ATAGTCC  98
      || ||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  TA-ACA-GTAGATCAGCCCAGACATTCCCCTTCGTCATGCCCTATAGTCC  96

seq1  TCTAAATGAGACTCCTTCCACAGGACTC-AAATGTCCATTTACTCCGAAG  147
      || || ||||||||||||||||| |||| |||||||||||||||||||||
seq2  TCAAATTGAGACTCCTTCCACAGAACTCAAAATGTCCATTTACTCCGAAG  146

seq1  TATCATCCACAATTTTTATCAACCAGGACCCAGGTGTCTTCAGAGACACT  197
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  TATCATCCACAA-TTTTATC-ACCAGGACCCAGGTGTCTTCAGAGACACT  194

seq1  CCAGTGAAATGTATCTATGCCCAGCAGCAGAGCTTCTGAAACCTCTAGTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAAATGTATCTATGCCCAGCAGCAGAGCTTCTGAAACCTCTAGTT  244

seq1  CAGATCAAAGTTGGAAAATATTTTTGATAGGAATCTTCCTAGAGTTCAGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAAAGTTGGAAAATATTTTTGATAGGAATCTTCCTAGAGTTCAGC  294

seq1  TCACACGCTGGACAGCTTGAGCTGACTTGGGGCATGCATTGGTTTTATGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACGCTGGACAGCTTGAGCTGACTTGGGGCATGCATTGGTTTTATGA  344

seq1  GAAGGGAACAGAGGACAAAATGATGCCCCTCTGTCAAACAACGGGAGTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAACAGAGGACAAAATGATGCCCCTCTGTCAAACAACGGGAGTGG  394

seq1  TGTGAAGTCCCGAGCTTCGAGCACACATCATGGGCATTTGGATGTGTCGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGTCCCGAGCTTCGAGCACACATCATGGGCATTTGGATGTGTCGT  444

seq1  CCCAACAGCAGGATGTTACGCAGCTCTGGTCCAAGCTGCTGATGCCTCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAGCAGGATGTTACGCAGCTCTGGTCCAAGCTGCTGATGCCTCTG  494

seq1  CAATGTGGGTCACCCCAGAGGGACATCATGGGAAGGTGAAGCTAGATCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGGGTCACCCCAGAGGGACATCATGGGAAGGTGAAGCTAGATCTA  544

seq1  TCACTCACAGCATCGGAGGGAACCTGCAAGGAGAAGTGGATGGACAGCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCACAGCATCGGAGGGAACCTGCAAGGAGAAGTGGATGGACAGCTG  594

seq1  CCCCTTGGCAGGCACAGCTGGATGGGGAGAGTCTCCAGTGGGAATGAGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGGCAGGCACAGCTGGATGGGGAGAGTCTCCAGTGGGAATGAGAA  644

seq1  GACCCCATGAAACACAGCCTGGAGCCTCCAGCATAGCACAGTTCCCCACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCATGAAACACAGCCTGGAGCCTCCAGCATAGCACAGTTCCCCACC  694

seq1  ACCCAGCCTCTCTTCCCAGAGTCCACAGCTTTCTACACCACTGTTTCTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCTCTCTTCCCAGAGTCCACAGCTTTCTACACCACTGTTTCTGA  744

seq1  CAAAGCTCATAGCCATCCTGGCCATTGCCAAAAGAAAGGTGTGCCCACCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTCATAGCCATCCTGGCCATTGCCAAAAGAAAGGTGTGCCCACCA  794

seq1  GATGGGGCATCTTGATTGTGGGAACTTTCCAAGCCCTGTTCCTCTCCCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGCATCTTGATTGTGGGAACTTTCCAAGCCCTGTTCCTCTCCCAG  844

seq1  GGAAGCCTCTAATTCTCTAGCTGGATCCAGAGTGCACAGCATTCTTCTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCTCTAATTCTCTAGCTGGATCCAGAGTGCACAGCATTCTTCTCA  894

seq1  GTAGGATATGCCACCCAGCAGACCCAGGACCAGCTGAGCGCTGGCAGAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATATGCCACCCAGCAGACCCAGGACCAGCTGAGCGCTGGCAGAAG  944

seq1  AGGCCGCCGCTGTGCCACCTCTCATTCTGCCCACCACACGCTGCTGGGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGCCGCTGTGCCACCTCTCATTCTGCCCACCACACGCTGCTGGGGA  994

seq1  AAAACAAGCTGGCTGGAATCTCTAACAAGACAATGCTGAGCCCACATGTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGCTGGCTGGAATCTCTAACAAGACAATGCTGAGCCCACATGTG  1044

seq1  GTTTTGAGGAAAGATATTTCTACCTCCCATACAGACCCAGAATAAATAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGGAAAGATATTTCTACCTCCCATACAGACCCAGAATAAATAAA  1094

seq1  TAAACTCAAGAGAAATTGCCAACTGTGAGAACATCTCTTTTTTGAAGAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCAAGAGAAATTGCCAACTGTGAGAACATCTCTTTTTTGAAGAAT  1144

seq1  TC  1149
      ||
seq2  TC  1146

seq1: chr1_91049299_91050366
seq2: B6Ng01-135A03.g_67_1110

seq1  GAATTCCTGCTATGTTACCTAACTTCAACAAAGGTTGGGTGTGCTGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTATGTTACCTAACTTCAACAAAGGTTGGGTGTGCTGGAGT  50

seq1  CCTGCCCAGACACTGCCTGTTTGTGGAGGTGACCCTGGAAAGCTGATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCAGACACTGCCTGTTTGTGGAGGTGACCCTGGAAAGCTGATTCA  100

seq1  GTCTCACGAGGCAGGGAAGCAGGAAGTCCCAAGAGGGAGGGTGCGTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACGAGGCAGGGAAGCAGGAAGTCCCAAGAGGGAGGGTGCGTTCTC  150

seq1  TATGCATGGGCAGTTTCTGATACACGGCACGGGTGAAAGTGGGTGCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATGGGCAGTTTCTGATACACGGCACGGGTGAAAGTGGGTGCTGTA  200

seq1  AGGCAGGAGAGATCCATCTCATGACTCGGACACAGGAGGACCCCACCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGAGATCCATCTCATGACTCGGACACAGGAGGACCCCACCCTT  250

seq1  TCCCTAGTGTAGGCTAGGTTGCACTAAGGGCTCCACCTGCTGCTGTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGTGTAGGCTAGGTTGCACTAAGGGCTCCACCTGCTGCTGTGAGT  300

seq1  GTCACAGGAGTGACTGACTGAGGGACCTCACCATCCTGACCTTTCTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGAGTGACTGACTGAGGGACCTCACCATCCTGACCTTTCTCTTT  350

seq1  CTTTCTTTCTTTTTTTTTTTTTTTTTAATGTTTCTGTTCACTGCATCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTTTTTTTTTTTTTTTAATGTTTCTGTTCACTGCATCACC  400

seq1  CAGGCCATGTGGAAACCTGCCTATGACTTCTTACTCACCTGGAGCCACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCATGTGGAAACCTGCCTATGACTTCTTACTCACCTGGAGCCACCA  450

seq1  GATTGGGGACAGCTACCGAGATGTCATCCAGGAGTTGCACATAGGCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGGACAGCTACCGAGATGTCATCCAGGAGTTGCACATAGGCCTGG  500

seq1  ACAAGATGAAGAACCCCATCACCAGGCGCTGGAAGCACCTCACAGGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGAAGAACCCCATCACCAGGCGCTGGAAGCACCTCACAGGGACA  550

seq1  CTGATCCTGGTGAACTCACTGGACATCCTGAGGGCAGCTGCCTTCAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCTGGTGAACTCACTGGACATCCTGAGGGCAGCTGCCTTCAGTCC  600

seq1  CGCGGACCATGATGACTTTGTGATCTGAGTGGGATCCCTGCCCTACTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGACCATGATGACTTTGTGATCTGAGTGGGATCCCTGCCCTACTGCT  650

seq1  CACTGGAGTTGGGACTCTGCCCACCAGACCTGGGACTCCACCCACCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAGTTGGGACTCTGCCCACCAGACCTGGGACTCCACCCACCAGAG  700

seq1  CTTGGGACTCCACCCACCAGAGCTGGGACTTGGCCCATCATCTCTCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGACTCCACCCACCAGAGCTGGGACTTGGCCCATCATCTCTCCACA  750

seq1  GTGGGCTGTGCCATCACCGGGTGGTGCAGGGAGGGATGGCTGCTCAGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGTGCCATCACCGGGTGGTGCAGGGAGGGATGGCTGCTCAGGTC  800

seq1  GAGGCCTACCTGCCAGCCACGCCCAGGAGGGACTGAGGACTTTTGACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTACCTGCCAGCCACGCCCAGGAGGGACTGAGGACTTTTGACTTT  850

seq1  CTTCCCCTCCCCTCTATCCAGGGGCAGGTCCCAGGGGCTTTCTACTTCCA  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTCCCCTCCCCTCTATCCAGGGGCAGGTCCCA-GGGCTTTCTACTTCCA  899

seq1  GTTGCCAATTGTGTTGCTTTCTATTTGTTGAAAATGTACGTTTAAATTTA  950
      |||||| |||||| |||||||||||||||| ||||||||| |||||||| 
seq2  GTTGCC-ATTGTG-TGCTTTCTATTTGTTG-AAATGTACG-TTAAATTT-  944

seq1  AAATCACTTTTTTAAACAGAAGACTTAGAAAGGACGTAAGAAAGGTGGTA  1000
      ||||||| ||||||||||||||||||||  ||||||||   |||||||||
seq2  AAATCAC-TTTTTAAACAGAAGACTTAG--AGGACGTA--GAAGGTGGTA  989

seq1  TCTAATTTTTTAATGGACTGTAAAGGTTATTTAAAAATTTTTTCACCTTA  1050
       |||   |||| |||||||||||||| ||||    ||||||||| |||||
seq2  -CTA---TTTTGATGGACTGTAAAGG-TATT----AATTTTTTC-CCTTA  1029

seq1  GTAAAGGCAAATGCTATT  1068
         ||||| |||||||||
seq2  --TAAGGC-AATGCTATT  1044