BAC Information

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BAC

Clone NameB6Ng01-135I20
Chromosome1 (Build37)
Map Location 192,707,748 - 192,784,595
singlet/doubletdoublet
Overlap geneRps6kc1, Angel2, Vash2
Upstream geneSmyd2, Prox1, LOC100039394, EG666975
Downstream geneLOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135I20.bB6Ng01-135I20.g
ACCDH935559DH935560
length1,158430
definitionDH935559|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I20, 5' end.DH935560|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(192,783,428 - 192,784,595)(192,707,748 - 192,708,183)
sequence
gaattcttggtggtttgtttgttgttttgttttttgtttttgtttttgtt
ttagacaaggtttctctgtgtagccctggctgtccaggaaccctatttgt
aaaccaggctggccttgaactcacagtggtccacccacctctgcctccca
agggctgggattaaaggcgtgcgccaccctgcccatcactctgaatcttc
aaggccccactcttttccttgactccacttgcctcagctatctcaccaat
gggcagccttccattgagcggttccctatcagctttaaaacctacttctc
aggaaactactttcaccatgtcgtgctggggatttactgcaacggttact
acggttcactgggcatgagccgaagggctgagctgatggacaagccgctg
acctttcggactctgagtgaccttgtctttgacttcgaagattcctataa
gaaatacctgcacacggttaagaaggtcaagatcgggctgtacgtccccc
acgagccgcacagcttccagcccatcgagtggaagcaacttgtcctcaac
gtctccaagatgctgagggctgacatcaggaaggagctggagaagtacgc
cagggacatgcggatgaaggtgagctcagggcaagcccctgctgtgtggg
agcttccttctcatccctattggttactgtacaccaggaggaaacccctg
gcctgacgggagggaggagggtgctgatcccagttcaagggtgctctcca
tcacgggaaggaccagtgctagaaacctggagcaactgtgtccactgctg
ggctcggctcactttctggtttttattcagttcggctttagcccatggga
tggcactgcccacattagtttgtggttcccacctcagttcacccatccga
gaaacttcctcacagacatgctcagagagctgtcttctccacagatcctc
agtcccatcaaactgagagtcaggatttatcagtcacactgtctgtggct
ctttgattggacggtagtctttgcatgtggagctgggtctggcctcttgc
tggtagatcttgcacatcagtttcagcaaactggtggatcgagacatagg
aaaatcttggcagctctgctgaaaattaaagtttttttcttatattccta
aataatat
ctatctcgggaaccgggagttggaagcaatgccagaaaagtcacccacaa
aacccaacgttagagtgagagagaagccagtggcccctgaaagcagaagc
tacacatgtcaaacccatgcaagaagctttgattaaaacagccctggata
agacatcctcctcccaagagcaagacagattataaagcaaacaactctca
gcagcgtttctatgacctccgcagaatgaggatgaagtcagagatgctga
aggatcattccataaaggccctggcagcacggcatgcatatactacacac
aacagctttaagtgagtgggaggttaaaggaaaagaaaaactctcaaact
tgtactctcaaggaggaaatgctgaaggaaaaagggagaaaatgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_192783428_192784595
seq2: B6Ng01-135I20.b_50_1207 (reverse)

seq1  ATATTATTTAGGGAATAATAAGAAAAAAAAACTTTATATTTTCAGCAGAG  50
      |||||||||| ||||| |||||  |||||||||||| |||||||||||||
seq2  ATATTATTTA-GGAAT-ATAAG--AAAAAAACTTTA-ATTTTCAGCAGAG  45

seq1  CTGCAAGGTTTTTTCCCTATTGTCCTCGATCCA-CAGTTGGCTGAAACTG  99
      |||| | | ||||  |||| ||| ||||||||| ||||| ||||||||||
seq2  CTGCCAAGATTTT--CCTA-TGT-CTCGATCCACCAGTTTGCTGAAACTG  91

seq1  ATGGTGCAAGAATCTACCAGCAAAGAGGGCAGA-CCAGCT-CACATGCAA  147
      || ||||||| |||||||||| |||||| |||| |||||| |||||||||
seq2  AT-GTGCAAG-ATCTACCAGC-AAGAGGCCAGACCCAGCTCCACATGCAA  138

seq1  AGACTAACCGTCCAATCAAAGAGCCACAGACAGTGTGACTGTTAAATCCT  197
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGACT-ACCGTCCAATCAAAGAGCCACAGACAGTGTGACTGATAAATCCT  187

seq1  GACTCTCAGTTTGATGGGACTGAGGATCTGTGGAGAAGACAGCTCTCTGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCAGTTTGATGGGACTGAGGATCTGTGGAGAAGACAGCTCTCTGA  237

seq1  GCATGTCTGTGAGGAAGTTTCTCGGATGGGTGAACTGAGGTGGGAACCAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCTGTGAGGAAGTTTCTCGGATGGGTGAACTGAGGTGGGAACCAC  287

seq1  AAACTAATGTGGGCAGTGCCATCCCATGGGCTAAAGCCGAACTGAATAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATGTGGGCAGTGCCATCCCATGGGCTAAAGCCGAACTGAATAAA  337

seq1  AACCAGAAAGTGAGCCGAGCCCAGCAGTGGACACAGTTGCTCCAGGTTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAAAGTGAGCCGAGCCCAGCAGTGGACACAGTTGCTCCAGGTTTC  387

seq1  TAGCACTGGTCCTTCCCGTGATGGAGAGCACCCTTGAACTGGGATCAGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTGGTCCTTCCCGTGATGGAGAGCACCCTTGAACTGGGATCAGCA  437

seq1  CCCTCCTCCCTCCCGTCAGGCCAGGGGTTTCCTCCTGGTGTACAGTAACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCCCTCCCGTCAGGCCAGGGGTTTCCTCCTGGTGTACAGTAACC  487

seq1  AATAGGGATGAGAAGGAAGCTCCCACACAGCAGGGGCTTGCCCTGAGCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGATGAGAAGGAAGCTCCCACACAGCAGGGGCTTGCCCTGAGCTC  537

seq1  ACCTTCATCCGCATGTCCCTGGCGTACTTCTCCAGCTCCTTCCTGATGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATCCGCATGTCCCTGGCGTACTTCTCCAGCTCCTTCCTGATGTC  587

seq1  AGCCCTCAGCATCTTGGAGACGTTGAGGACAAGTTGCTTCCACTCGATGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCAGCATCTTGGAGACGTTGAGGACAAGTTGCTTCCACTCGATGG  637

seq1  GCTGGAAGCTGTGCGGCTCGTGGGGGACGTACAGCCCGATCTTGACCTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGCTGTGCGGCTCGTGGGGGACGTACAGCCCGATCTTGACCTTC  687

seq1  TTAACCGTGTGCAGGTATTTCTTATAGGAATCTTCGAAGTCAAAGACAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCGTGTGCAGGTATTTCTTATAGGAATCTTCGAAGTCAAAGACAAG  737

seq1  GTCACTCAGAGTCCGAAAGGTCAGCGGCTTGTCCATCAGCTCAGCCCTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCAGAGTCCGAAAGGTCAGCGGCTTGTCCATCAGCTCAGCCCTTC  787

seq1  GGCTCATGCCCAGTGAACCGTAGTAACCGTTGCAGTAAATCCCCAGCACG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATGCCCAGTGAACCGTAGTAACCGTTGCAGTAAATCCCCAGCACG  837

seq1  ACATGGTGAAAGTAGTTTCCTGAGAAGTAGGTTTTAAAGCTGATAGGGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGAAAGTAGTTTCCTGAGAAGTAGGTTTTAAAGCTGATAGGGAA  887

seq1  CCGCTCAATGGAAGGCTGCCCATTGGTGAGATAGCTGAGGCAAGTGGAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCAATGGAAGGCTGCCCATTGGTGAGATAGCTGAGGCAAGTGGAGT  937

seq1  CAAGGAAAAGAGTGGGGCCTTGAAGATTCAGAGTGATGGGCAGGGTGGCG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAAGAGTGGGGCCTTGAAGATTCAGAGTGATGGGCAGGGTGGCG  987

seq1  CACGCCTTTAATCCCAGCCCTTGGGAGGCAGAGGTGGGTGGACCACTGTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTTTAATCCCAGCCCTTGGGAGGCAGAGGTGGGTGGACCACTGTG  1037

seq1  AGTTCAAGGCCAGCCTGGTTTACAAATAGGGTTCCTGGACAGCCAGGGCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGGCCAGCCTGGTTTACAAATAGGGTTCCTGGACAGCCAGGGCT  1087

seq1  ACACAGAGAAACCTTGTCTAAAACAAAAACAAAAACAAAAAACAAAACAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAACCTTGTCTAAAACAAAAACAAAAACAAAAAACAAAACAA  1137

seq1  CAAACAAACCACCAAGAATTC  1168
      |||||||||||||||||||||
seq2  CAAACAAACCACCAAGAATTC  1158

seq1: chr1_192707748_192708183
seq2: B6Ng01-135I20.g_70_505

seq1  GAATTCCTATCTCGGGAACCGGGAGTTGGAAGCAATGCCAGAAAAGTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCTCGGGAACCGGGAGTTGGAAGCAATGCCAGAAAAGTCAC  50

seq1  CCACAAAACCCAACGTTAGAGTGAGAGAGAAGCCAGTGGCCCCTGAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAACCCAACGTTAGAGTGAGAGAGAAGCCAGTGGCCCCTGAAAGC  100

seq1  AGAAGCTACACATGTCAAACCCATGCAAGAAGCTTTGATTAAAACAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTACACATGTCAAACCCATGCAAGAAGCTTTGATTAAAACAGCCC  150

seq1  TGGATAAGACATCCTCCTCCCAAGAGCAAGACAGATTATAAAGCAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAGACATCCTCCTCCCAAGAGCAAGACAGATTATAAAGCAAACAA  200

seq1  CTCTCAGCAGCGTTTCTATGACCTCCGCAGAATGAGGATGAAGTCAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGCAGCGTTTCTATGACCTCCGCAGAATGAGGATGAAGTCAGAGA  250

seq1  TGCTGAAGGATCATTCCATAAAGGCCCTGGCAGCACGGCATGCATATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAGGATCATTCCATAAAGGCCCTGGCAGCACGGCATGCATATACT  300

seq1  ACACACAACAGCTTTAAGTGAGTGGGAGGTTAAAGGAAAAGAAAAACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAACAGCTTTAAGTGAGTGGGAGGTTAAAGGAAAAGAAAAACTCT  350

seq1  CAAACTTGTACTCTCAAGGAGGAAATGCTGAAGGAAAAAGGGAGAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGTACTCTCAAGGAGGAAATGCTGAAGGAAAAAGGGAGAAAATG  400

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  436
      ||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  436