BAC Information

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BAC

Clone NameB6Ng01-135P12
Chromosome1 (Build37)
Map Location 70,857,909 - 70,944,293
singlet/doubletdoublet
Overlap geneA830006F12Rik
Upstream geneSpag16, LOC100043210
Downstream geneEG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135P12.bB6Ng01-135P12.g
ACCDH935874DH935875
length1,207899
definitionDH935874|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P12, 5' end.DH935875|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,943,083 - 70,944,293)(70,857,909 - 70,858,802)
sequence
gaattctccatctgcaacctaaattagctgcagtgtgccacttctgctcc
cagattccggctgtgccaatcaaacacaagagacacaaaattcaatgaga
attagttctttgggtatcatagcatcttgacttacaagactttaaccttg
gcctcatgcttcctgtggggcctgttgctgaagttgcttaagggctagaa
atatcaagtagtacacatatttcttttttcatttgagttaaattgaaaat
gaaacctttaacgtcctattgattctagacatgttctgtatgcattaaat
tgaacttaatggactgagaaatgagcaccacagcacctataggtaagaat
tattcatgtaaggatatactgctcacatgccctttatccagtaatatatg
tatctgtctatgacaatatatagcactaaaacattatgttgaatatttct
taaataacaagaatcaattttcattcaggtcacttaaattctgctcacca
ttaatctgtcattagttcttggctttgcttctcttaaatataggtgtaca
agatttaatgaatatttctatgattagaaacacagactaaaattcttagc
aggaggagaatgtagaaatatggatgaccacactgtatttatgatattcc
aatcatagttacaacagacattcatttggcttgtttctgtctgctattag
tattaatgctttttctagtcttctcttttgtgattgcacccacttctact
agtaaacttaacatacttcaacctgcatccttattttgaatgaagccttc
acataaaactcatatatcagtggacgcctagaggggatatacttaaatac
agttttgtataatgtaactctgcgtacctaacagttaactcattgtattt
ctgacaaaccctaagctttattgttatactgtgcttcaagtgtcatttct
ggtgtgaccttttgcacacggttccttaattcaggcaacctacaaagtct
gtatgtcattgcctaatgacaaatggtctactttatttttatctgaatga
agatgttctgtttgaaaggcctcctgctcccctttcttcttcatttttct
ctaacctctgttcaatcaatctgaacaatacaggcatgcttcctccaagt
tctttttccaaacacatttcctatatgtaaaagatcagattctctaagca
caatttg
gaattcagcttttgttcattgtattcatgactacaaaccttggggttttt
tttttttgttttgttttgtttttgtttttttctcagactaagaaatactc
agaggtataatcagatcttctatagtatttaattaggcataattaaacac
catctacacaaagcacagtgttttcaaagtcctttcttctgttacattgc
taatgaattaacaaattaattggcattgtgagttacaatagaaaatgtcg
cgagaaaaatttaactgccttacaaaattaccctcttctgtagatctgtg
ttctgtcacaatataaaattcaatgtcattcccaacagttaagagggaaa
aaatatgaagcaaaaacatgaggacggaaagacagacagaaggaaagacc
tcaccacctcttattctgatctttctttttttgttgttgttttttagttt
tttgtttgtttgtttggttggttggtttttttggttttttgagacagggt
ttctctgtatatccctgggtgatctttttttttaaagtgattaaataccc
cacttactatgttagggtttagagatcatcttttatgcccaaatctctta
ctgatggccatctttggggcaagactataataaaagattattaagaagga
cataggcttatttttctgtgtcaatctgattttattgctaaaaaatgtgt
tttagaaatactatgcatgattattctagtaaaagaaaaaaaaaaggtct
ccaaaaaagatacgttaataaagagcttgtctctcatgtttccattctta
gtttttgcacgaagctgtttttgcagacagctttaaaggggcatcttttc
actaaatatttaatttgggcaaatatagtggaggggcagccttttgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_70943083_70944293
seq2: B6Ng01-135P12.b_46_1252 (reverse)

seq1  CAAATGTGTGCCTTAGAGAGGATTCTGATCTTAATCACATTATGAAAATG  50
      ||||| |||| ||||||   || |||||||||  | ||||   | |||||
seq2  CAAAT-TGTG-CTTAGA---GAATCTGATCTT--TTACATATAGGAAATG  43

seq1  TGTTTGGGAAAAAGAGACATGGAAGTAAGCATGCCTGTAT--GTCAGATG  98
      ||||| ||||||||| || ||| || ||||||||||||||   |||||| 
seq2  TGTTT-GGAAAAAGA-ACTTGG-AGGAAGCATGCCTGTATTGTTCAGATT  90

seq1  GATGGGACAGAGGTAGGAGAAAAAGGAAGAAGAAAGGGGAAGCAGGGAGA  148
      ||| | ||||||||  |||||||| |||||||||||||| |||| |||| 
seq2  GATTGAACAGAGGTTAGAGAAAAATGAAGAAGAAAGGGG-AGCA-GGAGG  138

seq1  GCTTCATAACAGAACATCCTCATTCAGAT-AAAATAAAGTAGACCATTTG  197
       |||   ||||||||||| |||||||||| ||||||||||||||||||||
seq2  CCTTTCAAACAGAACATCTTCATTCAGATAAAAATAAAGTAGACCATTTG  188

seq1  TCATTAGGCAATGACATACAGACTTGGT-GGTTGCCTGAA-TAAGGAACC  245
      ||||||||||||||||||||||||| || ||||||||||| |||||||||
seq2  TCATTAGGCAATGACATACAGACTTTGTAGGTTGCCTGAATTAAGGAACC  238

seq1  TGTGTGGCAAAGGTCACACCAGGAATGACACTTGAAGCACAGTATAACAA  295
       |||||  |||||||||||||| |||||||||||||||||||||||||||
seq2  -GTGTGCAAAAGGTCACACCAGAAATGACACTTGAAGCACAGTATAACAA  287

seq1  T-AAGCTTA-GGTTTGTCAG-AATACAATGAGTTAACTGTTAGGTACGCA  342
      | ||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  TAAAGCTTAGGGTTTGTCAGAAATACAATGAGTTAACTGTTAGGTACGCA  337

seq1  GAGTTACATTATACAAAACTGTATTTAAGTATAT-CCCTCTAGGCGTCCA  391
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGTTACATTATACAAAACTGTATTTAAGTATATCCCCTCTAGGCGTCCA  387

seq1  CTGATATATGAGTTTTATGTGAAGGCTTCATTCAAAATAAGGATGCAGGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATATGAGTTTTATGTGAAGGCTTCATTCAAAATAAGGATGCAGGT  437

seq1  TGAAGTATGTTAAGTTTACTAGTAGAAGTGGGTGCAATCACAAAAGAGAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTATGTTAAGTTTACTAGTAGAAGTGGGTGCAATCACAAAAGAGAA  487

seq1  GACTAGAAAAAGCATTAATACTAATAGCAGACAGAAACAAGCCAAATGAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAAAAAGCATTAATACTAATAGCAGACAGAAACAAGCCAAATGAA  537

seq1  TGTCTGTTGTAACTATGATTGGAATATCATAAATACAGTGTGGTCATCCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTGTAACTATGATTGGAATATCATAAATACAGTGTGGTCATCCA  587

seq1  TATTTCTACATTCTCCTCCTGCTAAGAATTTTAGTCTGTGTTTCTAATCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTACATTCTCCTCCTGCTAAGAATTTTAGTCTGTGTTTCTAATCA  637

seq1  TAGAAATATTCATTAAATCTTGTACACCTATATTTAAGAGAAGCAAAGCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATATTCATTAAATCTTGTACACCTATATTTAAGAGAAGCAAAGCC  687

seq1  AAGAACTAATGACAGATTAATGGTGAGCAGAATTTAAGTGACCTGAATGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTAATGACAGATTAATGGTGAGCAGAATTTAAGTGACCTGAATGA  737

seq1  AAATTGATTCTTGTTATTTAAGAAATATTCAACATAATGTTTTAGTGCTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATTCTTGTTATTTAAGAAATATTCAACATAATGTTTTAGTGCTA  787

seq1  TATATTGTCATAGACAGATACATATATTACTGGATAAAGGGCATGTGAGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTCATAGACAGATACATATATTACTGGATAAAGGGCATGTGAGC  837

seq1  AGTATATCCTTACATGAATAATTCTTACCTATAGGTGCTGTGGTGCTCAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATCCTTACATGAATAATTCTTACCTATAGGTGCTGTGGTGCTCAT  887

seq1  TTCTCAGTCCATTAAGTTCAATTTAATGCATACAGAACATGTCTAGAATC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTCCATTAAGTTCAATTTAATGCATACAGAACATGTCTAGAATC  937

seq1  AATAGGACGTTAAAGGTTTCATTTTCAATTTAACTCAAATGAAAAAAGAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGACGTTAAAGGTTTCATTTTCAATTTAACTCAAATGAAAAAAGAA  987

seq1  ATATGTGTACTACTTGATATTTCTAGCCCTTAAGCAACTTCAGCAACAGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTACTACTTGATATTTCTAGCCCTTAAGCAACTTCAGCAACAGG  1037

seq1  CCCCACAGGAAGCATGAGGCCAAGGTTAAAGTCTTGTAAGTCAAGATGCT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGGAAGCATGAGGCCAAGGTTAAAGTCTTGTAAGTCAAGATGCT  1087

seq1  ATGATACCCAAAGAACTAATTCTCATTGAATTTTGTGTCTCTTGTGTTTG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACCCAAAGAACTAATTCTCATTGAATTTTGTGTCTCTTGTGTTTG  1137

seq1  ATTGGCACAGCCGGAATCTGGGAGCAGAAGTGGCACACTGCAGCTAATTT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCACAGCCGGAATCTGGGAGCAGAAGTGGCACACTGCAGCTAATTT  1187

seq1  AGGTTGCAGATGGAGAATTC  1211
      ||||||||||||||||||||
seq2  AGGTTGCAGATGGAGAATTC  1207

seq1: chr1_70857909_70858802
seq2: B6Ng01-135P12.g_70_968

seq1  GAATTCAGCTTTTGTTCATTGTATTCATGACTACAAACCTTGGGGTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTTTGTTCATTGTATTCATGACTACAAACCTTGGGGTTTTT  50

seq1  TTGTTTTGTTTTGTTTTGTTTTTGTTTTTTTCTCAGACTAAGAAATACTC  100
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTTTGTTTTGTTTTTGTTTTTTTCTCAGACTAAGAAATACTC  100

seq1  AGAGGTATAATCAGATCTTCTATAGTATTTAATTAGGCATAATTAAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTATAATCAGATCTTCTATAGTATTTAATTAGGCATAATTAAACAC  150

seq1  CATCTACACAAAGCACAGTGTTTTCAAAGTCCTTTCTTCTGTTACATTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACACAAAGCACAGTGTTTTCAAAGTCCTTTCTTCTGTTACATTGC  200

seq1  TAATGAATTAACAAATTAATTGGCATTGTGAGTTACAATAGAAAATGTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATTAACAAATTAATTGGCATTGTGAGTTACAATAGAAAATGTCG  250

seq1  CGAGAAAAATTTAACTGCCTTACAAAATTACCCTCTTCTGTAGATCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAAAATTTAACTGCCTTACAAAATTACCCTCTTCTGTAGATCTGTG  300

seq1  TTCTGTCACAATATAAAATTCAATGTCATTCCCAACAGTTAAGAGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCACAATATAAAATTCAATGTCATTCCCAACAGTTAAGAGGGAAA  350

seq1  AAATATGAAGCAAAAACATGAGGACGGAAAGACAGACAGAAGGAAAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGAAGCAAAAACATGAGGACGGAAAGACAGACAGAAGGAAAGACC  400

seq1  TCACCACCTCTTATTCTGATCTTTCTTTTTTTGTTGTTGTTTTTTAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACCTCTTATTCTGATCTTTCTTTTTTTGTTGTTGTTTTTTAGTTT  450

seq1  TTTGTTTGTTTGTTTGGTTGGTTGGTTTTTTTGGTTTTTTGAGACAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGGTTGGTTGGTTTTTTTGGTTTTTTGAGACAGGGT  500

seq1  TTCTCTGTATATCCCTGGGTGATCTTTTTTTTTAAAGTGATTAAATACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTATATCCCTGGGTGATCTTTTTTTTTAAAGTGATTAAATACCC  550

seq1  CACTTACTATGTTAGGGTTTAGAGATCATC-TTTATGCCCAAATCTCTTA  599
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACTTACTATGTTAGGGTTTAGAGATCATCTTTTATGCCCAAATCTCTTA  600

seq1  CTGATGGCCATCTTTGGGGCAAGACTATAATAAAAGATTATTAAGAAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGCCATCTTTGGGGCAAGACTATAATAAAAGATTATTAAGAAGGA  650

seq1  CATAGGCTTATTTTTCTGTGTCAATCTGATTTTATTGCTAAAAAATGTG-  698
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATAGGCTTATTTTTCTGTGTCAATCTGATTTTATTGCTAAAAAATGTGT  700

seq1  TTTAGAAATACTATGCATGATTATTCTAGTAAAAGAAAAAAAAAAGGTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAATACTATGCATGATTATTCTAGTAAAAGAAAAAAAAAAGGTCT  750

seq1  CCAAAAAAGATACGTTAATAAAGAGCTTGTCTCTCATGTTTCCATTCTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAGATACGTTAATAAAGAGCTTGTCTCTCATGTTTCCATTCTTA  800

seq1  G-TCTTGCACGAAGCTGTTTTCTGCAGACAGCTTTAAA-GGGCATCTTTT  846
      | | ||||||||||||||||| |||||||||||||||| |||||||||||
seq2  GTTTTTGCACGAAGCTGTTTT-TGCAGACAGCTTTAAAGGGGCATCTTTT  849

seq1  CACTAAATTATTTAATTTGGGCAAA-ATAGTGGA-GGGCAGCC-CTTGTC  893
      ||||||| ||||||||||||||||| |||||||| ||||||||  |||||
seq2  CACTAAA-TATTTAATTTGGGCAAATATAGTGGAGGGGCAGCCTTTTGTC  898

seq1  A  894
      |
seq2  A  899