BAC Information

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BAC

Clone NameB6Ng01-136A05
Chromosome1 (Build37)
Map Location 188,797,355 - 188,981,544
singlet/doubletdoublet
Overlap geneSpata17
Upstream geneLyplal1, Tgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1
Downstream geneGpatch2, Esrrg, 9330162B11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136A05.bB6Ng01-136A05.g
ACCDH935906DH935907
length1,1241,032
definitionDH935906|Mus musculus domesticus DNA, BAC clone: B6Ng01-136A05, 5' end.DH935907|Mus musculus domesticus DNA, BAC clone: B6Ng01-136A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(188,980,397 - 188,981,544)(188,797,355 - 188,798,385)
sequence
gaattcagaaatctgcctacctctgcctcccaagtgctgggattaaaggc
atgcggcacccccagtgcctagccactccatgctttctaaaatgctaata
gcctgtatattaaaatgcacaatcagcgttcatgatgagggtggtattta
tgaaatcctacacatgatccctaggcagctctgtagtgtttccataactg
ggctatgtgtttggttccctgattactctgaaacccacacatcaacgtgc
agagcatctctggcatgtgagaactgatgcaatatttgatgcctgttact
ttcctgtgaaccacttctggttgaacactcagccttagaagtgcagtttc
ccctctccatttgttttctctagttctctgtcagcactcctttctagtgt
tgcttatcataatccagaagtaacagtgaaccaacagcttgctgtttcaa
aatatttatgtgaatatttgtgctaattgctgtctttgtaatctgctaat
ttgcatttgttttgaataataagcaaaaaagctgctataaacctgatgtt
tatgaatgtggctagttcctagaaaactcaattcaaaatgtttaagtctc
tcctcttcccactgtgcttgactttcatctctcctctcctcactggggtt
gggtgtcccctctcctctcctcactgaggttgggtgtcccctctcctcct
cactgaggttgggtgtcccctctcctcctcacagtggttgggtgtcccct
ctcctcctcactgaggttgggtgtcccctctcctcctcactgtggttggg
tgtctcctctcctcctcactgaggttgggtgtcccctctcctctcctcac
tgaggttgggtgtccctctcttctcactgaggttgggtgtccctctcctc
ctcactgaggtgagtgtccctctcctcctcacaatggttgggtgtctctc
tcttctcactggggtgggtgtcccctctcctcctcactgaagtgggggcc
cctctcctctcacggaggtggtgctcctcatcctctcctgaggttggagg
tccctctctctactcacagaggttgggagtccctctcctcctgagaggct
ggaggtccctctctctactgaggt
gaattccatgcaagccgttcacttacaaatcaacccatagaaaccgccat
ttactatgtgcagttgctaaggacagcaaaaagagaacataactttaagc
acttaaagataggaaggcaaagctttggtcactagaactgttttagctgg
ctcctatgtccctttgtttatatctacatcctgttgcttcctgggactca
gatgagtgcctcttcattttctgctgtgtgttatttcaacttcaattgta
ttttgtaggcttttggttgcagtgacagataaccaagagaaagcatttat
aaagaggaaaagttgattttggctcatagcttgactttactctgatcact
tgagagttttgctttgggtctgtggcagtatactacattatgtcaggagc
ctgtgagggagggggaggcctgttcacctcaagatggctaagaagtaaag
agaggaagggggctgtgttcccaatatcccctctgttctagttttgtttc
tattgctgtgacaaaatatccaaagcaactgagtaaagaaagggttcttt
cagtttacatcatggtagggaagtgaaggcaggactttggccagtcacat
cacatccacagtcaaccacaccacatccacagtcagccacataacatcca
gtcagctacatcatcacatccacagtctagcagacataaatgaaagctca
cttgcttgttctcaagtccatttctccacagagacagttcagagttcctg
ccagggaatggtgtttaaagtgggctgggtactttcatatcattaactta
gagcattcccacagcagacatgccctaggaccaatttaaaggggacaacc
cctcattgaccattttcacatgatctaagttgggtcaagatgccaaagct
aaccatcacacccttactgggcctatcactttccagtagtggcacaggct
taagtagtgcaaccacacatcaatagactcaagatggaaataatagcact
ctagtacctccctcagcttcttgctagatacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_188980397_188981544
seq2: B6Ng01-136A05.b_44_1167 (reverse)

seq1  ACCTCAGTGAGGAGGAGAG-GGGACACCCAACCTCAGTGAGGAGGAGAGG  49
      ||||||||      ||||| |||||  ||| ||||  | ||||||||| |
seq2  ACCTCAGT-----AGAGAGAGGGACCTCCAGCCTC--TCAGGAGGAGA-G  42

seq1  GGACACCCAACCTCAGTGAGGAGAGGAGAGGGGACACCCAACCTCAGTGA  99
      |||| ||||||||| ||||| ||| |||| |||||  |||||||||| ||
seq2  GGACTCCCAACCTCTGTGAGTAGA-GAGA-GGGACCTCCAACCTCAG-GA  89

seq1  GGAGGA-GAGGAGACACCCAACCACAGTGAGGAGGAGAGGGGACACCCAA  148
       ||||| |||||| ||||  ||| | |||| |||||||||||   ||| |
seq2  -GAGGATGAGGAG-CACC--ACCTCCGTGA-GAGGAGAGGGG--CCCCCA  132

seq1  CCTCAGTGAGGAGGAGAGGGGACACCCAACCCCAGTGAGGAGGAGAGGAG  198
      | ||||||||||||||||||||||||| |||||||||| || |||| |||
seq2  CTTCAGTGAGGAGGAGAGGGGACACCC-ACCCCAGTGA-GAAGAGA-GAG  179

seq1  ACACCCAACCACTGTGAGGAGGAGAGGGGACACTCAACCTCAGTGAGGAG  248
      ||||||||||| ||||||||||||| ||||||||| ||||||||||||||
seq2  ACACCCAACCATTGTGAGGAGGAGA-GGGACACTC-ACCTCAGTGAGGAG  227

seq1  GAGAGGGGACACCCAACCTCAGTGAGGAGGAGAGGGGACACCCAACCTCA  298
      |||| |||||||||||||||||||| || |||| ||||||||||||||||
seq2  GAGA-GGGACACCCAACCTCAGTGA-GAAGAGA-GGGACACCCAACCTCA  274

seq1  GTGAGGAGAGGAGAGGGGACACCCAACCTCAGTGAGGAGGAGAGGAGACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAGAGGAGAGGGGACACCCAACCTCAGTGAGGAGGAGAGGAGACA  324

seq1  CCCAACCACAGTGAGGAGGAGAGGGGACACCCAACCTCAGTGAGGAGGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCACAGTGAGGAGGAGAGGGGACACCCAACCTCAGTGAGGAGGAG  374

seq1  AGGGGACACCCAACCACTGTGAGGAGGAGAGGGGACACCCAACCTCAGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACACCCAACCACTGTGAGGAGGAGAGGGGACACCCAACCTCAGTG  424

seq1  AGGAGGAGAGGGGACACCCAACCTCAGTGAGGAGAGGAGAGGGGACACCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGAGGGGACACCCAACCTCAGTGAGGAGAGGAGAGGGGACACCC  474

seq1  AACCCCAGTGAGGAGAGGAGAGATGAAAGTCAAGCACAGTGGGAAGAGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGTGAGGAGAGGAGAGATGAAAGTCAAGCACAGTGGGAAGAGGA  524

seq1  GAGACTTAAACATTTTGAATTGAGTTTTCTAGGAACTAGCCACATTCATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTAAACATTTTGAATTGAGTTTTCTAGGAACTAGCCACATTCATA  574

seq1  AACATCAGGTTTATAGCAGCTTTTTTGCTTATTATTCAAAACAAATGCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGGTTTATAGCAGCTTTTTTGCTTATTATTCAAAACAAATGCAA  624

seq1  ATTAGCAGATTACAAAGACAGCAATTAGCACAAATATTCACATAAATATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGATTACAAAGACAGCAATTAGCACAAATATTCACATAAATATT  674

seq1  TTGAAACAGCAAGCTGTTGGTTCACTGTTACTTCTGGATTATGATAAGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACAGCAAGCTGTTGGTTCACTGTTACTTCTGGATTATGATAAGCA  724

seq1  ACACTAGAAAGGAGTGCTGACAGAGAACTAGAGAAAACAAATGGAGAGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGAAAGGAGTGCTGACAGAGAACTAGAGAAAACAAATGGAGAGGG  774

seq1  GAAACTGCACTTCTAAGGCTGAGTGTTCAACCAGAAGTGGTTCACAGGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGCACTTCTAAGGCTGAGTGTTCAACCAGAAGTGGTTCACAGGAA  824

seq1  AGTAACAGGCATCAAATATTGCATCAGTTCTCACATGCCAGAGATGCTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGGCATCAAATATTGCATCAGTTCTCACATGCCAGAGATGCTCT  874

seq1  GCACGTTGATGTGTGGGTTTCAGAGTAATCAGGGAACCAAACACATAGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTTGATGTGTGGGTTTCAGAGTAATCAGGGAACCAAACACATAGCC  924

seq1  CAGTTATGGAAACACTACAGAGCTGCCTAGGGATCATGTGTAGGATTTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATGGAAACACTACAGAGCTGCCTAGGGATCATGTGTAGGATTTCA  974

seq1  TAAATACCACCCTCATCATGAACGCTGATTGTGCATTTTAATATACAGGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCACCCTCATCATGAACGCTGATTGTGCATTTTAATATACAGGC  1024

seq1  TATTAGCATTTTAGAAAGCATGGAGTGGCTAGGCACTGGGGGTGCCGCAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCATTTTAGAAAGCATGGAGTGGCTAGGCACTGGGGGTGCCGCAT  1074

seq1  GCCTTTAATCCCAGCACTTGGGAGGCAGAGGTAGGCAGATTTCTGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCAGCACTTGGGAGGCAGAGGTAGGCAGATTTCTGAATTC  1124

seq1: chr1_188797355_188798385
seq2: B6Ng01-136A05.g_70_1101

seq1  GAATTCCATGCAAGCCGTTCACTTACAAATCAACCCATAGAAACCGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCAAGCCGTTCACTTACAAATCAACCCATAGAAACCGCCAT  50

seq1  TTACTATGTGCAGTTGCTAAGGACAGCAAAAAGAGAACATAACTTTAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATGTGCAGTTGCTAAGGACAGCAAAAAGAGAACATAACTTTAAGC  100

seq1  ACTTAAAGATAGGAAGGCAAAGCTTTGGTCACTAGAACTGTTTTAGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGATAGGAAGGCAAAGCTTTGGTCACTAGAACTGTTTTAGCTGG  150

seq1  CTCCTATGTCCCTTTGTTTATATCTACATCCTGTTGCTTCCTGGGACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATGTCCCTTTGTTTATATCTACATCCTGTTGCTTCCTGGGACTCA  200

seq1  GATGAGTGCCTCTTCATTTTCTGCTGTGTGTTATTTCAACTTCAATTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTGCCTCTTCATTTTCTGCTGTGTGTTATTTCAACTTCAATTGTA  250

seq1  TTTTGTAGGCTTTTGGTTGCAGTGACAGATAACCAAGAGAAAGCATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGGCTTTTGGTTGCAGTGACAGATAACCAAGAGAAAGCATTTAT  300

seq1  AAAGAGGAAAAGTTGATTTTGGCTCATAGCTTGACTTTACTCTGATCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAAAAGTTGATTTTGGCTCATAGCTTGACTTTACTCTGATCACT  350

seq1  TGAGAGTTTTGCTTTGGGTCTGTGGCAGTATACTACATTATGTCAGGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTTTGCTTTGGGTCTGTGGCAGTATACTACATTATGTCAGGAGC  400

seq1  CTGTGAGGGAGGGGGAGGCCTGTTCACCTCAAGATGGCTAAGAAGTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGGGAGGGGGAGGCCTGTTCACCTCAAGATGGCTAAGAAGTAAAG  450

seq1  AGAGGAAGGGGGCTGTGTTCCCAATATCCCCTCTGTTCTAGTTTTGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGGGGGCTGTGTTCCCAATATCCCCTCTGTTCTAGTTTTGTTTC  500

seq1  TATTGCTGTGACAAAATATCCAAAGCAACTGAGTAAAGAAAGGGTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTGTGACAAAATATCCAAAGCAACTGAGTAAAGAAAGGGTTCTTT  550

seq1  CAGTTTACATCATGGTAGGGAAGTGAAGGCAGGACTTTGGCCAGTCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTACATCATGGTAGGGAAGTGAAGGCAGGACTTTGGCCAGTCACAT  600

seq1  CACATCCACAGTCAACCACACCACATCCACAGTCAGCCACATAACATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCACAGTCAACCACACCACATCCACAGTCAGCCACATAACATCCA  650

seq1  GTCAGCTACATCATCACATCCACAGTCTAGCAGACATAAATGAAAGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTACATCATCACATCCACAGTCTAGCAGACATAAATGAAAGCTCA  700

seq1  CTTGCTTGTTCTCAAGTCCATTTCTCCACAGAGACAGTTCAGAGTTCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGTTCTCAAGTCCATTTCTCCACAGAGACAGTTCAGAGTTCCTG  750

seq1  CCAGGGAATGGTG-TTAAAGTGGGCTGGGTACTTTCATATCAGTTAACTT  799
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  CCAGGGAATGGTGTTTAAAGTGGGCTGGGTACTTTCATATCA-TTAACTT  799

seq1  AGAGCATTCCCACAGCAGACATGCCCTAGGACCAATTTAAAGGGGACAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTCCCACAGCAGACATGCCCTAGGACCAATTTAAAGGGGACAAC  849

seq1  CCCTCATTGACCATTTTCACATGATCTAGGTTGGGTCAAGATGCCAAAGC  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCCTCATTGACCATTTTCACATGATCTAAGTTGGGTCAAGATGCCAAAGC  899

seq1  TAACCATCACACCCTTACTGGGCCCTATCACTTCCCAGTAGTGCAACAGG  949
      |||||||||||||||||||||| |||||||||| |||||||||  |||||
seq2  TAACCATCACACCCTTACTGGG-CCTATCACTTTCCAGTAGTGGCACAGG  948

seq1  C-TAAGTAGTGCAACCAACACATCAATAGACTCAAGATGGAAATAATAGC  998
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTAAGTAGTGCAACC-ACACATCAATAGACTCAAGATGGAAATAATAGC  997

seq1  AC-CTAGTACCTCCCTCAGC-TCTTGCTAGATACG  1031
      || ||||||||||||||||| ||||||||||||||
seq2  ACTCTAGTACCTCCCTCAGCTTCTTGCTAGATACG  1032