BAC Information

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BAC

Clone NameB6Ng01-136F16
Chromosome1 (Build37)
Map Location 93,281,468 - 93,282,498
singlet/doubletsinglet
Overlap geneIlkap
Upstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923
Downstream gene1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4, LOC100040419
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136F16.bB6Ng01-136F16.g
ACCDH936146DH936147
length5821,026
definitionDH936146|Mus musculus domesticus DNA, BAC clone: B6Ng01-136F16, 5' end.DH936147|Mus musculus domesticus DNA, BAC clone: B6Ng01-136F16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctgacattccatagtttgtcttaagattccccaccccaatggctctttgg
gggggggtaattccccttacatacactgagtagaaaccatacttcagatt
tctaatttggaccctttgctgaattagcaattagtggtccagtctctcag
gcagcaagcacggtctccaatcagccctcaatctcagaggagcagtcaac
actgtataaagcactatgaccagagacaccatggagaggaaaggatgtgc
ttcgtcttacaccctgtagtccagtccatcatccatggaagtccgggaag
aatctggaggcaggaactggttcaggggacagggaggagtgctgccttac
tgacttgctctccagggcttgcatgaactattttcttatgactcttagga
tcaacaactcagggatggccttgcccacaataagctggcacttccacatc
aattaggaaatcaggaaaatgccccacaggcttgtctgtatgtaaagact
ctggttacgcattttctcacttgaggtttcttcttctccagtgactccta
cttgtgtcagttgacatcaactagccacgccg

gaattccctggaactggagtaatggatgctgggaactgatcctgggtccc
ctgcaggagcaataagtgctcttaaccactgagccatctctccagccaca
gcttagtttttgaaacaaatgttgttttgtttgttttgtgtcttaagata
ggtctcactctgtaggccaggcagatcttggagctcacaatgttagcatt
tctcacgctccagcctcctgtgttctgggataacaggtgtgagctactat
actggactcaacaattaaaatggatgaaacttacttaaatctcttaaata
ccttttcccacatgtcagtgtgactggtatctcaacaatgtgaatttcat
gttcattgcttgagatgaaacttcaaagctttaatgaagctgagtgtggt
gaaattacctacgtgtaatctcagcacacctgggcaggggcacaaggctc
tgtaattggaggccagactgggctaaatatggagcccccacctcaaaact
cagtaaagcaagcttcagtgaagaggtgtgttcattgttttagggatata
attaacctttaattcgttcttctagtactcgggtttcatactttgctgtg
tttgatggacatggaggaatacgagcctcgaaatttgctgcacagaattt
gcaccagaacttaatcaggaaatttcctaaaggtgagactgagaactgaa
cctgtggacgtttgacttgctgtgctgtttgcatggccgagtctgtcgga
ctgggtgttttgctttggcagaacgtcgtttgatgggttttggggatgtt
gcacagttgatagtttacttgactagcatgcctgaggccctagattcagt
cctcaggactacgtatactgggtatgatggttcatgaggcagatgagcag
ttcaaaatcattttcagctgcacagtaagtttgaagcctggcctacatag
tctctgtcacaaaaagaagtcttaggcttaggtcagaagtctgagcttaa
gggtcagaagaagctgtgttaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93281468_93282498
seq2: B6Ng01-136F16.g_69_1094 (reverse)

seq1  TTTATTTACACAGCCTCTTCTGAACCCTAAGCTCAGACTTTCTGAACCTA  50
      |||||| ||||||| |||||||| || ||||||||||| ||||| |||||
seq2  TTTATTAACACAGCTTCTTCTGACCCTTAAGCTCAGAC-TTCTG-ACCTA  48

seq1  AGCCTAAGACTTTCTTTTTTGGTGACAGAGACTTATGTAGGCCAGGCTTC  100
      |||||||||| ||||||||  ||||||||||| |||||||||||||||||
seq2  AGCCTAAGAC-TTCTTTTT--GTGACAGAGAC-TATGTAGGCCAGGCTTC  94

seq1  AAACTTACTGTGCAGCTGAAAATGATTTTTGAACTGCTCATCTGCCTCAT  150
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAACTTACTGTGCAGCTGAAAATGA-TTTTGAACTGCTCATCTGCCTCAT  143

seq1  GAACCATCATACCCAGTATACGTAGTCCTGAGGACTGAATCTAGGGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATCATACCCAGTATACGTAGTCCTGAGGACTGAATCTAGGGCCTC  193

seq1  AGGCATGCTAGTCAGGTAAACTATCAACTGTGCAACATCCCC-AAACCCA  249
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  AGGCATGCTAGTCAAGTAAACTATCAACTGTGCAACATCCCCAAAACCCA  243

seq1  TC-AACGACGTTCTGCCAAAGCAAAACACCCAGTCCGACAGACTCGGCCA  298
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACGACGTTCTGCCAAAGCAAAACACCCAGTCCGACAGACTCGGCCA  293

seq1  TGCAAACAGCACAGCAAGTCAAACGTCCACAGGTTCAGTTCTCAGTCTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACAGCACAGCAAGTCAAACGTCCACAGGTTCAGTTCTCAGTCTCA  343

seq1  CCTTTAGGAAATTTCCTGATTAAGTTCTGGTGCAAATTCTGTGCAGCAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGGAAATTTCCTGATTAAGTTCTGGTGCAAATTCTGTGCAGCAAA  393

seq1  TTTCGAGGCTCGTATTCCTCCATGTCCATCAAACACAGCAAAGTATGAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAGGCTCGTATTCCTCCATGTCCATCAAACACAGCAAAGTATGAAA  443

seq1  CCCGAGTACTAGAAGAACGAATTAAAGGTTAATTATATCCCTAAAACAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGTACTAGAAGAACGAATTAAAGGTTAATTATATCCCTAAAACAAT  493

seq1  GAACACACCTCTTCACTGAAGCTTGCTTTACTGAGTTTTGAGGTGGGGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACCTCTTCACTGAAGCTTGCTTTACTGAGTTTTGAGGTGGGGGC  543

seq1  TCCATATTTAGCCCAGTCTGGCCTCCAATTACAGAGCCTTGTGCCCCTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTTAGCCCAGTCTGGCCTCCAATTACAGAGCCTTGTGCCCCTGC  593

seq1  CCAGGTGTGCTGAGATTACACGTAGGTAATTTCACCACACTCAGCTTCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGTGCTGAGATTACACGTAGGTAATTTCACCACACTCAGCTTCAT  643

seq1  TAAAGCTTTGAAGTTTCATCTCAAGCAATGAACATGAAATTCACATTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTTTGAAGTTTCATCTCAAGCAATGAACATGAAATTCACATTGTT  693

seq1  GAGATACCAGTCACACTGACATGTGGGAAAAGGTATTTAAGAGATTTAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACCAGTCACACTGACATGTGGGAAAAGGTATTTAAGAGATTTAAG  743

seq1  TAAGTTTCATCCATTTTAATTGTTGAGTCCAGTATAGTAGCTCACACCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCATCCATTTTAATTGTTGAGTCCAGTATAGTAGCTCACACCTG  793

seq1  TTATCCCAGAACACAGGAGGCTGGAGCGTGAGAAATGCTAACATTGTGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCAGAACACAGGAGGCTGGAGCGTGAGAAATGCTAACATTGTGAG  843

seq1  CTCCAAGATCTGCCTGGCCTACAGAGTGAGACCTATCTTAAGACACAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGATCTGCCTGGCCTACAGAGTGAGACCTATCTTAAGACACAAAA  893

seq1  CAAACAAAACAACATTTGTTTCAAAAACTAAGCTGTGGCTGGAGAGATGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAACAACATTTGTTTCAAAAACTAAGCTGTGGCTGGAGAGATGG  943

seq1  CTCAGTGGTTAAGAGCACTTATTGCTCCTGCAGGGGACCCAGGATCAGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGTTAAGAGCACTTATTGCTCCTGCAGGGGACCCAGGATCAGTT  993

seq1  CCCAGCATCCATTACTCCAGTTCCAGGGAATTC  1031
      |||||||||||||||||||||||||||||||||
seq2  CCCAGCATCCATTACTCCAGTTCCAGGGAATTC  1026


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