BAC Information

Click to search

BAC

Clone NameB6Ng01-138C01
Chromosome1 (Build37)
Map Location 36,178,616 - 36,302,038
singlet/doubletdoublet
Overlap geneUgcgl1
Upstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1
Downstream geneLOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138C01.bB6Ng01-138C01.g
ACCDH937470DH937471
length1,1151,016
definitionDH937470|Mus musculus domesticus DNA, BAC clone: B6Ng01-138C01, 5' end.DH937471|Mus musculus domesticus DNA, BAC clone: B6Ng01-138C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,178,616 - 36,179,739)(36,301,020 - 36,302,038)
sequence
gaattcagggtgtcattcttcatggacccttatactcgaaggctcctggc
tctgcagaagctctgtgtggctgtgagtatcaggtcctgtaactcctggg
gtgagagagaaagcgtccatccctctccttttttgtatcagtttgaggtc
atcctggtctacatggtgaggccttgtctctgagctcagagtgaaccagt
tgctcctgcttggggctgggtcctgtcagggggtgtgtctgctgataggt
gtcatataggatgctctcactgcccccacaaccccaggaccctgcctctt
cccctccgccccatcctttgaccaatgtccatctgccaacactgagctca
gcttctctctctccagcatgtctgcagctttgccagcccagcttctctcc
ttcattgtgcttgtgtatgtgtgtgtatacatgtgtgtgcacacatgtgg
gggccagaggtcaaccttggtgtggggcaagtggactgtgccactagata
gaagacttggtaaggctgagcaggcccaaatcccagggcacctcggactt
gagaacaatagctgtgaagccagctccctgccaaacacggaaccatgaca
ctccactgaaaggaccatgacaattggtcatgtagcataaaaatctgcta
ctgaggtgtctagataggccccaagtgtttagccaatgaactttccttct
tgatctttcctcatttctttgtgcaaaatttgtttaatccctggttcatc
ccaataaaatgtatgcatccgcatctaccatcaaacaaagcagtttggca
agcaaggaccttgatgaaagcattaggatcaccctgggggtaggggggag
ccacgcccaaatctcccagagaggtcttctctcttctagcccctccatac
tctccccacgaattcgaagccaaacagattctgccccatcctggtttatc
catccccttcctatctggccctacacactctgaaggaatgcgagcctgtc
ctcacttccaatggtgccagcagtgcctggtacacagagaccaggaatcc
aacatcatcagtacacagtagcctggctgggaagacactacacacaataa
cacacaccacacaca
gaattctggctagtgtggctagccactttgccagaggaattgtctctgcc
tcctgagaactgggattacaggtagctattactacaatttctacaggggt
cctggagatctgaactgtagtcttcacatctgggcagcaaatactttgtc
tactgagtcatctccgcagcccgtgcctggcgtttgcggtgtattctggg
aattgagcttaggtttccagcttagcagcaagaacctttgtcttttttgc
tttcttttcccctgatgctgcttgggtcttggaggtggtgatataggtgt
ttcagtcagagctgagatcatttagtctcagtcagtttgactagttatgg
atctctgcattaaccaacatcacatactctaaaacaaatttataactttt
tcttccttttgagatagggccttgaactcacagagattcttctgcctttt
tttttttttttttttttctcgagacagggtttctctgtatagccctggct
gccctcgaactcacaaatccgtttgcctctgcctcccgagtgctgggatt
aaaggtgtgtgccaccacgcccagcatgagcttcttctgctttttgtgtc
ttgagtttgtgtacgtttatttaacttgagaggaataaataataaaaata
gggagaaaaaggttgaaataactatctgccggggcggttggactgcgcct
tgaagctcacctgcttgaactgggtcttctaggatcttaaattcagaggc
gagctggctcaaccaggagaggggaggggccgagagaaggggcgggtctt
atgccggtttcatggccgctgcgggactctctggcaaacccccgccgcac
tcgatagccggaagtcgtcctgccttcgctctaggaagcggaagtgcaag
ggcagctggcaactgggttattgctttgagaacccggcttgtgaggagcg
cgggaaaggcgcgtgtcggcttctcactggggcagcctcccggcgatcgc
cgcctgctccgtcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_36178616_36179739
seq2: B6Ng01-138C01.b_44_1158

seq1  GAATTCAGGGTGTCATTCTTCATGGACCCTTATACTCGAAGGCTCCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTGTCATTCTTCATGGACCCTTATACTCGAAGGCTCCTGGC  50

seq1  TCTGCAGAAGCTCTGTGTGGCTGTGAGTATCAGGTCCTGTAACTCCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAAGCTCTGTGTGGCTGTGAGTATCAGGTCCTGTAACTCCTGGG  100

seq1  GTGAGAGAGAAAGCGTCCATCCCTCTCCTTTTTTGTATCAGTTTGAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAGAAAGCGTCCATCCCTCTCCTTTTTTGTATCAGTTTGAGGTC  150

seq1  ATCCTGGTCTACATGGTGAGGCCTTGTCTCTGAGCTCAGAGTGAACCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGTCTACATGGTGAGGCCTTGTCTCTGAGCTCAGAGTGAACCAGT  200

seq1  TGCTCCTGCTTGGGGCTGGGTCCTGTCAGGGGGTGTGTCTGCTGATAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGCTTGGGGCTGGGTCCTGTCAGGGGGTGTGTCTGCTGATAGGT  250

seq1  GTCATATAGGATGCTCTCACTGCCCCCACAACCCCAGGACCCTGCCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATAGGATGCTCTCACTGCCCCCACAACCCCAGGACCCTGCCTCTT  300

seq1  CCCCTCCGCCCCATCCTTTGACCAATGTCCATCTGCCAACACTGAGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCGCCCCATCCTTTGACCAATGTCCATCTGCCAACACTGAGCTCA  350

seq1  GCTTCTCTCTCTCCAGCATGTCTGCAGCTTTGCCAGCCCAGCTTCTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTCTCTCCAGCATGTCTGCAGCTTTGCCAGCCCAGCTTCTCTCC  400

seq1  TTCATTGTGCTTGTGTATGTGTGTGTATACATGTGTGTGCACACATGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGTGCTTGTGTATGTGTGTGTATACATGTGTGTGCACACATGTGG  450

seq1  GGGCCAGAGGTCAACCTTGGTGTGGGGCAAGTGGACTGTGCCACTAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGAGGTCAACCTTGGTGTGGGGCAAGTGGACTGTGCCACTAGATA  500

seq1  GAAGACTTGGTAAGGCTGAGCAGGCCCAAATCCCAGGGCACCTCGGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTTGGTAAGGCTGAGCAGGCCCAAATCCCAGGGCACCTCGGACTT  550

seq1  GAGAACAATAGCTGTGAAGCCAGCTCCCTGCCAAACACGGAACCATGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAATAGCTGTGAAGCCAGCTCCCTGCCAAACACGGAACCATGACA  600

seq1  CTCCACTGAAAGGACCATGACAATTGGTCATGTAGCATAAAAATCTGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTGAAAGGACCATGACAATTGGTCATGTAGCATAAAAATCTGCTA  650

seq1  CTGAGGTGTCTAGATAGGCCCCAAGTGTTTAGCCAATGAACTTTCCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTGTCTAGATAGGCCCCAAGTGTTTAGCCAATGAACTTTCCTTCT  700

seq1  TGATCTTTCCTCATTTCTTTGTGCAAAATTTGTTTAATCCCTGGTTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTCCTCATTTCTTTGTGCAAAATTTGTTTAATCCCTGGTTCATC  750

seq1  CCAATAAAATGTATGCATCCGCATCTACCATCAAACAAAGCAGTTTGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAAATGTATGCATCCGCATCTACCATCAAACAAAGCAGTTTGGCA  800

seq1  AGCAAGGACCTTGATGAAAGCATTAGGATCACCCTGGGGGTAGGGGGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGACCTTGATGAAAGCATTAGGATCACCCTGGGGGTAGGGGGGAG  850

seq1  CCACGCCCAAATCTCCCAGAGAAGGTCTTCTCTCTTCTAGCCCCTCCATA  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCACGCCCAAATCTCCCAGAG-AGGTCTTCTCTCTTCTAGCCCCTCCATA  899

seq1  CTCTCCCCACGAATTCGGAGCCAAACCAGATTCTGCCCCCATCCTGGTTT  950
      ||||||||||||||||| ||||||| ||||||||| ||||||||||||||
seq2  CTCTCCCCACGAATTCGAAGCCAAA-CAGATTCTG-CCCCATCCTGGTTT  947

seq1  ATCCATCCCCTTCCTATCTGGCCCCTACACACTCTGAAGGGAAATGCGGA  1000
      ||||||||||||||||||||| ||||||||||||||||||  ||||| ||
seq2  ATCCATCCCCTTCCTATCTGG-CCCTACACACTCTGAAGG--AATGC-GA  993

seq1  CCCTGTCCCCAACTCCCAGTGGTGCCCAGCAGTGCCTGGGTACACAGGAG  1050
       ||||||| | ||| ||| ||||| |||||||||||| |||||||| |||
seq2  GCCTGTCCTC-ACTTCCAATGGTG-CCAGCAGTGCCT-GGTACACA-GAG  1039

seq1  ACCCAGGAATCACAACATCCATCAGTAACACAGTAGCACTGGCTGG---G  1097
      | ||||||||| |||||| ||||||| |||||||||| ||||||||   |
seq2  A-CCAGGAATC-CAACAT-CATCAGT-ACACAGTAGC-CTGGCTGGGAAG  1084

seq1  ACAC-ACACACA--CACACACA-CACACACA  1124
      |||| |||||||   ||||||| ||||||||
seq2  ACACTACACACAATAACACACACCACACACA  1115

seq1: chr1_36301020_36302038
seq2: B6Ng01-138C01.g_68_1083 (reverse)

seq1  CAGGGCGGAGCA-GCGGCGATCGCCGGGGAGGCTGCGCCAGTGAGAAGCC  49
      |||| ||||||| |||||||||||| |||||||||| |||||||||||||
seq2  CAGGACGGAGCAGGCGGCGATCGCC-GGGAGGCTGCCCCAGTGAGAAGCC  49

seq1  GACACGCGCCTTTCCCGCCGCTCCTCACAAGCCGGTTTCTCAAAGCAATA  99
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  GACACGCGCCTTTCCCG-CGCTCCTCACAAGCCGGGTTCTCAAAGCAATA  98

seq1  ACCCAGTTGCCAGCTGCCCCTGCACTTCCGCTTCCTAGAGGCGAAGGCAG  149
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  ACCCAGTTGCCAGCTGCCCTTGCACTTCCGCTTCCTAGA-GCGAAGGCAG  147

seq1  GACGACTTCCGGCTATCGAGTGCGGCGGGGGTTTGCCAGAGAGTCCCGCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACTTCCGGCTATCGAGTGCGGCGGGGGTTTGCCAGAGAGTCCCGCA  197

seq1  GCGGCCATGAAACCGGCATAAGACCCGCCCCTTCTCTCGGCCCCTCCCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCCATGAAACCGGCATAAGACCCGCCCCTTCTCTCGGCCCCTCCCCT  247

seq1  CTCCTGGTTGAGCCAGCTCGCCTCCTGAATTTAAGATCCTAGAAGACCCA  299
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTCCTGGTTGAGCCAGCTCGCCT-CTGAATTTAAGATCCTAGAAGACCCA  296

seq1  GTTCAAGCAGGTGAGCTTCAAGGCGCAGTCCAACCGCCCCGGCAGATAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGCAGGTGAGCTTCAAGGCGCAGTCCAACCGCCCCGGCAGATAGT  346

seq1  TATTTCAACCTTTTTCTCCCTATTTTTATTATTTATTCCTCTCAAGTTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAACCTTTTTCTCCCTATTTTTATTATTTATTCCTCTCAAGTTAA  396

seq1  ATAAACGTACACAAACTCAAGACACAAAAAGCAGAAGAAGCTCATGCTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACGTACACAAACTCAAGACACAAAAAGCAGAAGAAGCTCATGCTGG  446

seq1  GCGTGGTGGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGTGGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAAAC  496

seq1  GGATTTGTGAGTTCGAGGGCAGCCAGGGCTATACAGAGAAACCCTGTCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGTGAGTTCGAGGGCAGCCAGGGCTATACAGAGAAACCCTGTCTC  546

seq1  GAGAAAAAAAAAAAAAAAAAAAAAGGCAGAAGAATCTCTGTGAGTTCAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAAAAAAAAAAAAAAAAAGGCAGAAGAATCTCTGTGAGTTCAAG  596

seq1  GCCCTATCTCAAAAGGAAGAAAAAGTTATAAATTTGTTTTAGAGTATGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATCTCAAAAGGAAGAAAAAGTTATAAATTTGTTTTAGAGTATGTG  646

seq1  ATGTTGGTTAATGCAGAGATCCATAACTAGTCAAACTGACTGAGACTAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGTTAATGCAGAGATCCATAACTAGTCAAACTGACTGAGACTAAA  696

seq1  TGATCTCAGCTCTGACTGAAACACCTATATCACCACCTCCAAGACCCAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCAGCTCTGACTGAAACACCTATATCACCACCTCCAAGACCCAAG  746

seq1  CAGCATCAGGGGAAAAGAAAGCAAAAAAGACAAAGGTTCTTGCTGCTAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCAGGGGAAAAGAAAGCAAAAAAGACAAAGGTTCTTGCTGCTAAG  796

seq1  CTGGAAACCTAAGCTCAATTCCCAGAATACACCGCAAACGCCAGGCACGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACCTAAGCTCAATTCCCAGAATACACCGCAAACGCCAGGCACGG  846

seq1  GCTGCGGAGATGACTCAGTAGACAAAGTATTTGCTGCCCAGATGTGAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGGAGATGACTCAGTAGACAAAGTATTTGCTGCCCAGATGTGAAGA  896

seq1  CTACAGTTCAGATCTCCAGGACCCCTGTAGAAATTGTAGTAATAGCTACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTTCAGATCTCCAGGACCCCTGTAGAAATTGTAGTAATAGCTACC  946

seq1  TGTAATCCCAGTTCTCAGGAGGCAGAGACAATTCCTCTGGCAAAGTGGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCCCAGTTCTCAGGAGGCAGAGACAATTCCTCTGGCAAAGTGGCT  996

seq1  AGCCACACTAGCCAGAATTC  1019
      ||||||||||||||||||||
seq2  AGCCACACTAGCCAGAATTC  1016