BAC Information

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BAC

Clone NameB6Ng01-138E20
Chromosome1 (Build37)
Map Location 178,724,060 - 178,862,734
singlet/doubletdoublet
Overlap geneCep170, Sdccag8, LOC666235
Upstream geneWdr64, Exo1, Gm104, Pld5, B020018G12Rik
Downstream geneAkt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138E20.bB6Ng01-138E20.g
ACCDH937600DH937601
length1,1461,144
definitionDH937600|Mus musculus domesticus DNA, BAC clone: B6Ng01-138E20, 5' end.DH937601|Mus musculus domesticus DNA, BAC clone: B6Ng01-138E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,724,060 - 178,725,209)(178,861,579 - 178,862,734)
sequence
gaattcattatctcaaattatatccttggatgtgagggtgatctggctgt
gacatctgtcacctcattgatcgccagggttgatttggctgatctggctg
gctaggcaggtgtccccttcctccctcaccagctaggtcgaagaggatgg
ccctccccgaacagaggaggaccagtcctctgtcaaagatatatgagtgg
ctgtgctaccctgctagaacctccaaacaagctctcaaattagatccttg
acacctaaaattttatcactgaaattaaaatcctgtcactttttcttgag
gttcattttgacaaatgttctacttagcaatctgccaatcactgaagtac
aactgatgttttatgaaagcatgggcctaattcagcttacaagtcacaca
gtgacccagctcattttcttggagacagccattgtagtctggcaccgagt
gtaagcgctctataagtactttcctctactcctgcagaacactacgaaag
tgtgacttcaaagtccactcttaacaaagtcactcactgttaccattttg
tgagatagtattaggtaaagttagtggatttttaaaattgtttttaatgc
agatgtacagcatacagtctggttcactgccttgatctgtgctactgagc
taccatagttgtttttgtatcatgtatgctaatagaaatgcaacaagagg
cagaaaagattgccttcagggacagacacccaaggacctgtagactgagc
tttgaacgattactgtcctatgggctatggcatagtcagtaacaatctca
gactctgagtcagttagattaagtctgaatcctattttactatttttact
ctgcatggccacaggcaccgtaaaagtgtcatgctccttagcttcctctc
ctacttagtgtcatgatgccatctactcaagttttgtcttgggaatccaa
agattatgttcagcttttcctaagatgtatactgtgctgctctaaactag
aaagtaactttactatcatgggatgagtattctacaataaaattagatgt
atatgctaaaggcacagtgttccaatgttctggtaagaactcgtatgttt
tatttaaatgtggactgtcttatttggttttggttctgtgataaaa
gaattcaaatttaaaaggggaagctttttgtttttaggtgtgtaaccaaa
gccttgtcagaaagcgcacctaaacatgacacgatggcattcagtcaggc
ggctacaggggattgcgcagggtcacctagagatttaatcaggtctcaga
tgctgatgctaaccagcattttgcaaagtttttataaattccttaaaaat
taaagaattaaattttttcttttgaaaattgaaagcaggttttagttttt
aaccagtcaagaaaacagagggaatttaaaattgaaacctcagggttttg
attggttaaatatgcacaatttataaaacagatttttctcaaagcagttt
tccggacatgtgaaggaaaatcattgtgttgctaaatacaaagccaaaca
aaatttgcagcttaaaatttaactgaagggatatttttagcatcaattcc
caatatattactagccctaagtatattatttaaatccttcttatgtaata
tgcaataatatttaatatgtggattttgtactgaaactatgagctcaaag
gggagtactcttttcttctctctctgaaatagaatttctacatagtttct
gctatatgtggagaaaatttcaaaactgctgtgcccagcaagcttaatac
ctttctgcatattctttctctttagggagagctgtgtatgatgggcgttt
ggtcacctgcgtccctgctgtggaacggtactgtgttgggactgtgttgg
taagtggaccccttggtggtggaagtgctacatgagagaagcaaacatta
gcagaatgctggtctaatagaggctgcttgcactaggtgaagggaccttg
cccctcagaacactgattcggaaagacatgtaaccttcttttggacattg
aaaggtaagaacagagacagagggaaagatcgctgagcaccacggtagcg
tcaccccaggcacacacagggcttggatgcgtgctcccatacacagctcc
ttctgtaaagcatacgcaagaacgaggagcagtgtcaggcttcctcttgc
agaggactcactatggactcagagaatttttgcctgccttaatttgcaat
gtttatatatctttggaatagaggataggaaggaaaagttcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_178724060_178725209
seq2: B6Ng01-138E20.b_48_1193

seq1  GAATTCATTATCTCAAATTATATCCTTGGATGTGAGGGTGATCTGGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATCTCAAATTATATCCTTGGATGTGAGGGTGATCTGGCTGT  50

seq1  GACATCTGTCACCTCATTGATCGCCAGGGTTGATTTGGCTGATCTGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTGTCACCTCATTGATCGCCAGGGTTGATTTGGCTGATCTGGCTG  100

seq1  GCTAGGCAGGTGTCCCCTTCCTCCCTCACCAGCTAGGTCGAAGAGGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCAGGTGTCCCCTTCCTCCCTCACCAGCTAGGTCGAAGAGGATGG  150

seq1  CCCTCCCCGAACAGAGGAGGACCAGTCCTCTGTCAAAGATATATGAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCGAACAGAGGAGGACCAGTCCTCTGTCAAAGATATATGAGTGG  200

seq1  CTGTGCTACCCTGCTAGAACCTCCAAACAAGCTCTCAAATTAGATCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTACCCTGCTAGAACCTCCAAACAAGCTCTCAAATTAGATCCTTG  250

seq1  ACACCTAAAATTTTATCACTGAAATTAAAATCCTGTCACTTTTTCTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTAAAATTTTATCACTGAAATTAAAATCCTGTCACTTTTTCTTGAG  300

seq1  GTTCATTTTGACAAATGTTCTACTTAGCAATCTGCCAATCACTGAAGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTTGACAAATGTTCTACTTAGCAATCTGCCAATCACTGAAGTAC  350

seq1  AACTGATGTTTTATGAAAGCATGGGCCTAATTCAGCTTACAAGTCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGTTTTATGAAAGCATGGGCCTAATTCAGCTTACAAGTCACACA  400

seq1  GTGACCCAGCTCATTTTCTTGGAGACAGCCATTGTAGTCTGGCACCGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCAGCTCATTTTCTTGGAGACAGCCATTGTAGTCTGGCACCGAGT  450

seq1  GTAAGCGCTCTATAAGTACTTTCCTCTACTCCTGCAGAACACTACGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCGCTCTATAAGTACTTTCCTCTACTCCTGCAGAACACTACGAAAG  500

seq1  TGTGACTTCAAAGTCCACTCTTAACAAAGTCACTCACTGTTACCATTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTCAAAGTCCACTCTTAACAAAGTCACTCACTGTTACCATTTTG  550

seq1  TGAGATAGTATTAGGTAAAGTTAGTGGATTTTTAAAATTGTTTTTAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAGTATTAGGTAAAGTTAGTGGATTTTTAAAATTGTTTTTAATGC  600

seq1  AGATGTACAGCATACAGTCTGGTTCACTGCCTTGATCTGTGCTACTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTACAGCATACAGTCTGGTTCACTGCCTTGATCTGTGCTACTGAGC  650

seq1  TACCATAGTTGTTTTTGTATCATGTATGCTAATAGAAATGCAACAAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATAGTTGTTTTTGTATCATGTATGCTAATAGAAATGCAACAAGAGG  700

seq1  CAGAAAAGATTGCCTTCAGGGACAGACACCCAAGGACCTGTAGACTGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGATTGCCTTCAGGGACAGACACCCAAGGACCTGTAGACTGAGC  750

seq1  TTTGAACGATTACTGTCCTATGGGCTATGGCATAGTCAGTAACAATCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACGATTACTGTCCTATGGGCTATGGCATAGTCAGTAACAATCTCA  800

seq1  GACTCTGAGTCAGTTAGATTAAGTCTGAATCCTATTTTACTATTTTTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGAGTCAGTTAGATTAAGTCTGAATCCTATTTTACTATTTTTACT  850

seq1  CTGCATGGCCACAGGCACCGTAAAAGTGTCATGCTCCTTAGCTTCCTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGGCCACAGGCACCGTAAAAGTGTCATGCTCCTTAGCTTCCTCTC  900

seq1  CTACTTAGTGTCATGATGCCATCTACTCAAGTTTTGTCTTGGGAATCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAGTGTCATGATGCCATCTACTCAAGTTTTGTCTTGGGAATCCAA  950

seq1  AGATTATGTTCAGCTTTTCCTAAGATGTATACTGTGCTGCTCTTAACTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGATTATGTTCAGCTTTTCCTAAGATGTATACTGTGCTGCTCTAAACTAG  1000

seq1  AAAGTAAACTTTACTATCATGGGATGAAGTATTCTACAATAAAA-TAGAT  1049
      ||||| |||||||||||||||||||| ||||||||||||||||| |||||
seq2  AAAGT-AACTTTACTATCATGGGATG-AGTATTCTACAATAAAATTAGAT  1048

seq1  GTATATGCTAAAGGCAACAGTG-TCCAATGTCCTGGTAAGAACTCTGTAT  1098
      ||||||||||||||| |||||| |||||||| ||||||||||||| ||||
seq2  GTATATGCTAAAGGC-ACAGTGTTCCAATGTTCTGGTAAGAACTC-GTAT  1096

seq1  GTTTTATGTTAAATGT-GACTGTCTTAATTTGGTTTTTGTTTCTGTGATA  1147
      ||||||| |||||||| ||||||||| |||||| ||||| ||||||||||
seq2  GTTTTAT-TTAAATGTGGACTGTCTT-ATTTGG-TTTTGGTTCTGTGATA  1143

seq1  AAA  1150
      |||
seq2  AAA  1146

seq1: chr1_178861579_178862734
seq2: B6Ng01-138E20.g_66_1209 (reverse)

seq1  AATGAAACTTTCTCCTTCCTACTCCTTCTATTTCAAAGATATAATAAACA  50
      |||| |||||| ||||||||| ||| |||||| ||||||||| |||||||
seq2  AATG-AACTTT-TCCTTCCTA-TCC-TCTATTCCAAAGATAT-ATAAACA  45

seq1  TTGCATATT-AGGCAGGCAAATATTCTCTGAGTTCCTGAGTGAGTCCTTC  99
      ||||| ||| ||||||||||| |||||||||| |||  ||||||||| ||
seq2  TTGCAAATTAAGGCAGGCAAAAATTCTCTGAG-TCCATAGTGAGTCC-TC  93

seq1  TGCAAGAGGAGCCCTGACACTGCTCCCTCGTCTTTGCCGTATGCTTTTAC  149
      ||||||||||  |||||||||||| ||||||  ||| ||||||| |||||
seq2  TGCAAGAGGAAGCCTGACACTGCT-CCTCGTTCTTG-CGTATGC-TTTAC  140

seq1  AGAAGGGAGCTGTGTATGGGAGCACGCATCCAAGCCCCTGTGTGTGCCTG  199
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGAA-GGAGCTGTGTATGGGAGCACGCATCCAAG-CCCTGTGTGTGCCTG  188

seq1  GGGTGACGCTACCGTGGTGCTCAGCGATCTTTCCCTCTTGTCTCTGTTCT  249
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGGTGACGCTACCGTGGTGCTCAGCGATCTTTCCCTC-TGTCTCTGTTCT  237

seq1  TACCTTTCAATGTCCAAAAGAAGGTTACATGTCTTTCCGAATCAGTGTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCAATGTCCAAAAGAAGGTTACATGTCTTTCCGAATCAGTGTTC  287

seq1  TGAGGGGCAAGGTCCCTTCACCTAGTGCAAGCAGCCTCTATTAGACCAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGCAAGGTCCCTTCACCTAGTGCAAGCAGCCTCTATTAGACCAGC  337

seq1  ATTCTGCTAATGTTTGCTTCTCTCATGTAGCACTTCCACCACCAAGGGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTAATGTTTGCTTCTCTCATGTAGCACTTCCACCACCAAGGGGT  387

seq1  CCACTTACCAACACAGTCCCAACACAGTACCGTTCCACAGCAGGGACGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTACCAACACAGTCCCAACACAGTACCGTTCCACAGCAGGGACGCA  437

seq1  GGTGACCAAACGCCCATCATACACAGCTCTCCCTAAAGAGAAAGAATATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCAAACGCCCATCATACACAGCTCTCCCTAAAGAGAAAGAATATG  487

seq1  CAGAAAGGTATTAAGCTTGCTGGGCACAGCAGTTTTGAAATTTTCTCCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGTATTAAGCTTGCTGGGCACAGCAGTTTTGAAATTTTCTCCAC  537

seq1  ATATAGCAGAAACTATGTAGAAATTCTATTTCAGAGAGAGAAGAAAAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCAGAAACTATGTAGAAATTCTATTTCAGAGAGAGAAGAAAAGAG  587

seq1  TACTCCCCTTTGAGCTCATAGTTTCAGTACAAAATCCACATATTAAATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCCTTTGAGCTCATAGTTTCAGTACAAAATCCACATATTAAATAT  637

seq1  TATTGCATATTACATAAGAAGGATTTAAATAATATACTTAGGGCTAGTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCATATTACATAAGAAGGATTTAAATAATATACTTAGGGCTAGTAA  687

seq1  TATATTGGGAATTGATGCTAAAAATATCCCTTCAGTTAAATTTTAAGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGGGAATTGATGCTAAAAATATCCCTTCAGTTAAATTTTAAGCTG  737

seq1  CAAATTTTGTTTGGCTTTGTATTTAGCAACACAATGATTTTCCTTCACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTGTTTGGCTTTGTATTTAGCAACACAATGATTTTCCTTCACAT  787

seq1  GTCCGGAAAACTGCTTTGAGAAAAATCTGTTTTATAAATTGTGCATATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGAAAACTGCTTTGAGAAAAATCTGTTTTATAAATTGTGCATATTT  837

seq1  AACCAATCAAAACCCTGAGGTTTCAATTTTAAATTCCCTCTGTTTTCTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATCAAAACCCTGAGGTTTCAATTTTAAATTCCCTCTGTTTTCTTG  887

seq1  ACTGGTTAAAAACTAAAACCTGCTTTCAATTTTCAAAAGAAAAAATTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTAAAAACTAAAACCTGCTTTCAATTTTCAAAAGAAAAAATTTAA  937

seq1  TTCTTTAATTTTTAAGGAATTTATAAAAACTTTGCAAAATGCTGGTTAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAATTTTTAAGGAATTTATAAAAACTTTGCAAAATGCTGGTTAGC  987

seq1  ATCAGCATCTGAGACCTGATTAAATCTCTAGGTGACCCTGCGCAATCCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCATCTGAGACCTGATTAAATCTCTAGGTGACCCTGCGCAATCCCC  1037

seq1  TGTAGCCGCCTGACTGAATGCCATCGTGTCATGTTTAGGTGCGCTTTCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCGCCTGACTGAATGCCATCGTGTCATGTTTAGGTGCGCTTTCTG  1087

seq1  ACAAGGCTTTGGTTACACACCTAAAAACAAAAAGCTTCCCCTTTTAAATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCTTTGGTTACACACCTAAAAACAAAAAGCTTCCCCTTTTAAATT  1137

seq1  TGAATTC  1156
      |||||||
seq2  TGAATTC  1144