BAC Information

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BAC

Clone NameB6Ng01-138F13
Chromosome1 (Build37)
Map Location 49,942,076 - 49,942,822
singlet/doubletsinglet
Overlap genenone
Upstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138F13.bB6Ng01-138F13.g
ACCDH937634DH937635
length1,1141,044
definitionDH937634|Mus musculus domesticus DNA, BAC clone: B6Ng01-138F13, 5' end.DH937635|Mus musculus domesticus DNA, BAC clone: B6Ng01-138F13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagaatccctcttccttgtgtttttccatctttatcttttatgt
gatcaaacatttgaagggtagtacatccaatgcaacagcatgtgctacaa
aacatggcaaataactcaacagaataagaaaatatttagtaagtcattat
ttgtacccttcacactgatccttggtactaatacattttataccaatatg
tatttgtaacagttggaaaccaaaacagaaaatcacagcctaacaaaatg
tagagctgtggaccccaggcccaagagatacacctacacaacattcccag
acttaattaaggctcaaaaacaaacagaaaatatagggaagaaagattac
aagagccgcagaatcagtggatctgttgtgagatttttatctactagtat
tatcagaagctacactcataaagtctcaccaacattagcagagtagggat
gaaaccaaagaacatgctgaactggacggcaaaaccttaatcaaagaatt
aaaggcaattgaggaaagttgggagaaggagatgatatcttcctcaagga
agaacaaatgaattggttatctagtgtcaaatagtcagtcacaaaacata
tataacatcatatggactgagcatgttatatctagtaatgtatatatgca
agcaataacaatcaatgaaaagagaagccatggttccgcgggagccatct
tggttccgggactctgtggagggcagtctgcacaggtgagagtgtggact
acagaggctagcagcttctgggacaggcgagagccacagagcttctgggt
cagcgccgttttcgggctccagacatccgtccaccttcctggccagagga
caggtgtccgcccagcctgggaggcctttgcctcagatctgcagaagcca
tcttggttccggactccgcagaaagtagtctacacagtgagagtgagact
actggaacaacggctctgtgacaagcaaagcacacagctctgggaagatt
ctgtttgggctcatctcgcactcgcacttcactcgctgggtccagtcatg
acacacaacttaatgcccagtacaggacgcccaggcaaaaatgggattgt
tggtaaggaatggg
gaattccttataaccccatgggacaaggaatagttgaacatgctcatcgc
acttaaaaaaaaatggcttttaaaaacaaaacaggggcagttatattccc
caaggtcaccaaaggcacatcttgcttttgctttatttgttcttaatttt
ttgtaaactgatgttaaaggacaatctgcagtggatcaccactggcatcc
agttacttctagttcttaagccatggtaaagtggcaggacccattaacta
acaaatggaagggtccagaccctgtcctaatctggggaaggggctcagtc
tgtgttttttcacaaaaaaaaagctggagcgatatggctgcctgaaaggt
tagtcaactggacacagatcctgaatattccagtaagtatgactctgacc
ttgattgtagctaaaaatcctcttagctgaaatgttcttttggaacacag
cctcctctcccagaaagttacagcctttctgtgattctcaaattcacctc
ccccacaccaggagctctaagtctaagcttgattgttgctaatttgcaat
tgaatggagtacctggacttccccaaagaagcttttgtactgttgctttt
cactgtctggactttgtttgtcaagcaagccagtcaaagccctttagcct
gactgcagcaggtgtgcagcctcacctccaacagtgcaggtggcagttat
taatcttcatgaggaagcattctaagtacatactgtggctttggtctgaa
ttgggactaaggtgtgctaatgagggctggacagtctaagatgggcatcc
agatctcggaaccataccaatttaagaaagaggtacatgccaaaaggcca
tggctgttgataacacaccacagagccatgttttgtgtgaaatataacac
aaacaagctgaatttagcctcaagatagaattggatggtttgggaagatc
taagatttctaagacaacatggcgcagccaccataattcccaggcagact
atagagcatagaataattttatgcctcagtacagctgttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_49942076_49942822
seq2: B6Ng01-138F13.g_370_1108

seq1  TTTTTCAC-AAAAAGAAGATGGAGCACGATGGCTGCCTGAAAGATGAGTT  49
      |||||||| ||||| ||| ||||||   |||||||||||||||    |||
seq2  TTTTTCACAAAAAAAAAGCTGGAGCGATATGGCTGCCTGAAAG----GTT  46

seq1  CGTCAACTGGACACAGATCCTGAATCTTCCAGTAAGTATGACTCTGACCT  99
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGTCAACTGGACACAGATCCTGAATATTCCAGTAAGTATGACTCTGACCT  96

seq1  TAATTATAGTTAAAAATCCTCTTTAGCCAAAAAGTTAATTTGGAGCACAG  149
      | ||| ||| ||||||||||| |||||  ||| |||  |||||| |||||
seq2  TGATTGTAGCTAAAAATCCTC-TTAGCTGAAATGTTCTTTTGGAACACAG  145

seq1  CCTCCTCTCCCAGAAAGTTACAGCCTTTCTGTGATTCTCAAAGTCACCTC  199
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCTCCTCTCCCAGAAAGTTACAGCCTTTCTGTGATTCTCAAATTCACCTC  195

seq1  CCCCACACCTGGTGCTCTAAGTCTAAGCTTGATCTTTGCTAATTTGCAAT  249
      ||||||||| || ||||||||||||||||||||  |||||||||||||||
seq2  CCCCACACCAGGAGCTCTAAGTCTAAGCTTGATTGTTGCTAATTTGCAAT  245

seq1  TGAATGGAGTACCTGGACTTCCCCAAAGAAGCTTTTGTGTTGCTGCTTTT  299
      ||||||||||||||||||||||||||||||||||||||  || |||||||
seq2  TGAATGGAGTACCTGGACTTCCCCAAAGAAGCTTTTGTACTGTTGCTTTT  295

seq1  CACTGTCTCAACTTTGTTTTTCAAGCAGGTCAGTCAATGCCCTTCAGCCT  349
      ||||||||  ||||||||| ||||||| | ||||||| |||||| |||||
seq2  CACTGTCTGGACTTTGTTTGTCAAGCAAGCCAGTCAAAGCCCTTTAGCCT  345

seq1  GACTGCAACAGGTGTACAGCCTCACCTCCAACAGCACA-GTGGCCGTTAT  398
      ||||||| ||||||| ||||||||||||||||||  || ||||| |||||
seq2  GACTGCAGCAGGTGTGCAGCCTCACCTCCAACAGTGCAGGTGGCAGTTAT  395

seq1  TAATCTTCATTAGGAAGCATTCTAAGTACATATTGTGGCTTTGGTCTGAA  448
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  TAATCTTCATGAGGAAGCATTCTAAGTACATACTGTGGCTTTGGTCTGAA  445

seq1  TTGTGAATAAGGTGTGCTAATGAGGGCTGGACAGTCAAAGACCGGCACCC  498
      ||| || ||||||||||||||||||||||||||||| ||||  |||| ||
seq2  TTGGGACTAAGGTGTGCTAATGAGGGCTGGACAGTCTAAGATGGGCATCC  495

seq1  AGATCTCGGAACCATACCAATCTAACACAGAGGTACATGCCAAAAGGCTG  548
      ||||||||||||||||||||| ||| | ||||||||||||||||||||  
seq2  AGATCTCGGAACCATACCAATTTAAGAAAGAGGTACATGCCAAAAGGCCA  545

seq1  TGGCTGTTGATAATACACAACAGAGCCATGTTTTGTGTGAAATATAACAC  598
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  TGGCTGTTGATAACACACCACAGAGCCATGTTTTGTGTGAAATATAACAC  595

seq1  AAACTAGCTGCACGTAGCCTCCAAGAAGGAATTGTATGGTTTGGGAAGAT  648
      |||| ||||| |  |||||| |||||  |||||| |||||||||||||||
seq2  AAACAAGCTGAATTTAGCCT-CAAGATAGAATTGGATGGTTTGGGAAGAT  644

seq1  CTAAGATTTCCTCAGACAGGCACTGCTGCCAGCCACCATAACTACCAGGT  698
      ||||||||| || |||||  ||  ||   |||||||||||| | ||||| 
seq2  CTAAGATTT-CTAAGACA-ACATGGC--GCAGCCACCATAATTCCCAGGC  690

seq1  AGGACTATAGAGCATA-AATAATTTTTATGCCTCAGTCCAGC-CTTTTTT  746
      | |||||||||||||| ||||| |||||||||||||| ||||  ||||||
seq2  A-GACTATAGAGCATAGAATAA-TTTTATGCCTCAGTACAGCTGTTTTTT  738

seq1  T  747
      |
seq2  T  739