BAC Information

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BAC

Clone NameB6Ng01-139C13
Chromosome1 (Build37)
Map Location 64,287,839 - 64,430,156
singlet/doubletdoublet
Overlap genenone
Upstream gene1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1
Downstream geneLOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139C13.bB6Ng01-139C13.g
ACCDH938216DH938217
length1,2041,043
definitionDH938216|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C13, 5' end.DH938217|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,287,839 - 64,289,049)(64,429,170 - 64,430,156)
sequence
gaattcaagccatcaaatgcctatatattattttatgacttaaagtcaaa
ctataaaaaagtaacaattgaatggctcgggggttgaacacttgccgtgg
atgtgctcctagaacctatgtaaagctggatgaagtagcgtgcctctggg
aacccagtacaattgctatctaacttcggggtcacagggtgtgcccaggt
caggttcaaacacctgttcttaataggccaataaacagctaaattagtaa
tgggagcagggaggggacacttacttaatgtagtcacactgggaagtgag
acaaagagatccagtgaacccctcaagtttttcatggccctgaaatagat
caaggtttaaacagaggaccaaggatatgaacatctaaacagttcctgtc
aagatgtggtccattggcccattgttttctgggcttcattctcatcctgg
aaactggtctgacaagatgttcaaactatgtgacatctcttcccaggcga
caagatccctctctagctggtgcctttcctctcccaacaagagattccta
ggggaattccaatttggaggtgggatccattgattcaacagtctggtgat
ctgactgagaaatgcaagtattgctttagaataccttcatttctgccata
gctgtcacacaattgcagtaagaaggcaggagaaactcacaggccagcta
gcctagttcacccaacagctgaagagagaccctgtctcaaacaaaggaga
aggcaagtaccaacttgccctctgacctccacatgcttgccacatcacat
gcgcacgcgcgcgcgcgcgcgcacacacacacacacacacacacacacac
acacacaatcttttcataaagaaaactaaaagaaggattatttttaggcc
acaggagtgagaacgacaagtgtgaccaacgccctctacagtgttttcag
taagtagttccaaacacaactttgtcctgtgcttttctgcttcgtgatca
gaatttccaagatcttcagaagatacctcaagcctgttggcaagtgtgga
tccttaaagtactaatactaccctgcttacgtgggagatttccactgacc
tcagtttattagatgagcccaccaaccctcccaagatggcctaccaaact
ttggaggctgtacctcctggggaatacattaagggtgagtgaagtagatc
tttt
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
atcaccgtcgttccccagctgatgagttctgaattcggcagttgaatcct
tctcaacagtctgtgttacgggaacctttataaacgtgatccgcagttct
ggttctgaaatgaagtatccctcctgcgccagtccggagttttttctcat
cccgggtttcggcaccaattgttattcgtcgcgttctcacgaccggccag
gaagaacacaacaaccagaatcttctacggcaaagctttattgcttacat
ctttttggggccagagtgtaagaagcaagagagagagaaaaacgaaaccc
cttctatttaaaagagaacaacaattgcctaggacgcatcactccctgat
tggctgcagcccatggccgagctgacgttcacgggaaaaacagagtacaa
gtagtcgtaaatacccttggctcatgcgcaaattatttgtttaccaactt
agaacacaggatgtcagcgccatcttgtgacggcgaatgtgggggcggct
tcccacataatccctgacagctttctgttttactcttctgagctctgttg
gctaggaagtaaacagtcagctccactcagtagcatgtttcttttgccaa
gattttgcctaggtgaacaagtaaccagagcctgaattctcagaaaccac
acctgcctccccaaatgctttctttcattgagttattggtgtcaggcatt
ttggttctaaccacaggaaaagctaactaacagagcaagggaatgtctct
aggtccctgtttaggccattggtaccttgcctcttaatttgaacgtggta
aggagtcccttagatgtttatatgggttatacatgaagcaaagacccatt
tgtagacacattgttcaaaagagatgggaacaagaaagtgtgaatggtag
cagctatgtgaaatgatgatttaaaaggatcttaaatagtataactttta
aacatgacttgggattggtgcagggatggtggaggctcagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_64287839_64289049
seq2: B6Ng01-139C13.b_46_1249

seq1  GAATTCAAGCCATCAAATGCCTATATATTATTTTATGACTTAAAGTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCATCAAATGCCTATATATTATTTTATGACTTAAAGTCAAA  50

seq1  CTATAAAAAAGTAACAATTGAATGGCTCGGGGGTTGAACACTTGCCGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAAAAGTAACAATTGAATGGCTCGGGGGTTGAACACTTGCCGTGG  100

seq1  ATGTGCTCCTAGAACCTATGTAAAGCTGGATGAAGTAGCGTGCCTCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTCCTAGAACCTATGTAAAGCTGGATGAAGTAGCGTGCCTCTGGG  150

seq1  AACCCAGTACAATTGCTATCTAACTTCGGGGTCACAGGGTGTGCCCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGTACAATTGCTATCTAACTTCGGGGTCACAGGGTGTGCCCAGGT  200

seq1  CAGGTTCAAACACCTGTTCTTAATAGGCCAATAAACAGCTAAATTAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCAAACACCTGTTCTTAATAGGCCAATAAACAGCTAAATTAGTAA  250

seq1  TGGGAGCAGGGAGGGGACACTTACTTAATGTAGTCACACTGGGAAGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCAGGGAGGGGACACTTACTTAATGTAGTCACACTGGGAAGTGAG  300

seq1  ACAAAGAGATCCAGTGAACCCCTCAAGTTTTTCATGGCCCTGAAATAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGATCCAGTGAACCCCTCAAGTTTTTCATGGCCCTGAAATAGAT  350

seq1  CAAGGTTTAAACAGAGGACCAAGGATATGAACATCTAAACAGTTCCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTTAAACAGAGGACCAAGGATATGAACATCTAAACAGTTCCTGTC  400

seq1  AAGATGTGGTCCATTGGCCCATTGTTTTCTGGGCTTCATTCTCATCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTGGTCCATTGGCCCATTGTTTTCTGGGCTTCATTCTCATCCTGG  450

seq1  AAACTGGTCTGACAAGATGTTCAAACTATGTGACATCTCTTCCCAGGCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGTCTGACAAGATGTTCAAACTATGTGACATCTCTTCCCAGGCGA  500

seq1  CAAGATCCCTCTCTAGCTGGTGCCTTTCCTCTCCCAACAAGAGATTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCCCTCTCTAGCTGGTGCCTTTCCTCTCCCAACAAGAGATTCCTA  550

seq1  GGGGAATTCCAATTTGGAGGTGGGATCCATTGATTCAACAGTCTGGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATTCCAATTTGGAGGTGGGATCCATTGATTCAACAGTCTGGTGAT  600

seq1  CTGACTGAGAAATGCAAGTATTGCTTTAGAATACCTTCATTTCTGCCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGAGAAATGCAAGTATTGCTTTAGAATACCTTCATTTCTGCCATA  650

seq1  GCTGTCACACAATTGCAGTAAGAAGGCAGGAGAAACTCACAGGCCAGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCACACAATTGCAGTAAGAAGGCAGGAGAAACTCACAGGCCAGCTA  700

seq1  GCCTAGTTCACCCAACAGCTGAAGAGAGACCCTGTCTCAAACAAAGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTTCACCCAACAGCTGAAGAGAGACCCTGTCTCAAACAAAGGAGA  750

seq1  AGGCAAGTACCAACTTGCCCTCTGACCTCCACATGCTTGCCACATCACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTACCAACTTGCCCTCTGACCTCCACATGCTTGCCACATCACAT  800

seq1  GCGCACGCGCGCGCGCGCGCG----CACACACACACACACACACACACAC  846
      |||||||||||||||||||||    |||||||||||||||||||||||||
seq2  GCGCACGCGCGCGCGCGCGCGCACACACACACACACACACACACACACAC  850

seq1  ACACACAATCTTTTCATAAAGAAAACTAAAAGAAGGATTATTTTTAGGCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAATCTTTTCATAAAGAAAACTAAAAGAAGGATTATTTTTAGGCC  900

seq1  ACAGGAGTGAGAACGACAAGTGTGACCAACGCCCTCTACAGTGTTTTTCA  946
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACAGGAGTGAGAACGACAAGTGTGACCAACGCCCTCTACAGTG-TTTTCA  949

seq1  GGTAAGTAGTTCCAAACACAACTTTGTCCTTGTGCTTTTCTGCTTCGTGA  996
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  -GTAAGTAGTTCCAAACACAACTTTGTCC-TGTGCTTTTCTGCTTCGTGA  997

seq1  TCAGAATTTCC-AGATCTTCAG-AGATA-CTCAAGGCTTGTGTGCAAGTG  1043
      ||||||||||| |||||||||| ||||| ||||| || |||  |||||||
seq2  TCAGAATTTCCAAGATCTTCAGAAGATACCTCAA-GCCTGTTGGCAAGTG  1046

seq1  TTGATCCTTAAAGTATCTAATACTACACTGCTTACAGGTGGAGATTTTCC  1093
      | ||||||||||||| |||||||||| |||||||| |  ||||| |||||
seq2  TGGATCCTTAAAGTA-CTAATACTACCCTGCTTAC-GTGGGAGA-TTTCC  1093

seq1  ACTGACTTCAGTTTTATTAGTATGAG-CCACCAAACCCTCAAAGATTGTG  1142
      |||||| |||| |||||||| ||||| ||||||| ||  | |||| ||  
seq2  ACTGACCTCAG-TTTATTAG-ATGAGCCCACCAACCCTCCCAAGA-TGGC  1140

seq1  CTACAGAACTTTGGAGGCCTGTTACCTCCTGGTGGAATACATTATAAGGT  1192
      ||||  ||||||||||| ||| |||||||||| ||||||||||| | |||
seq2  CTACCAAACTTTGGAGG-CTG-TACCTCCTGG-GGAATACATTA-AGGGT  1186

seq1  GTGATGAAGTAGTTCTTTT  1211
      | | |||||||| ||||||
seq2  GAG-TGAAGTAGATCTTTT  1204

seq1: chr1_64429170_64430156
seq2: B6Ng01-139C13.g_129_1110 (reverse)

seq1  TTGCTGAGCCTCTCACATCACTGCACCAATCCCAAGTCATTGGTTTAAAA  50
      ||||||||||||   |||| ||||||||||||||||||||  ||||||||
seq2  TTGCTGAGCCTCCACCATCCCTGCACCAATCCCAAGTCAT--GTTTAAAA  48

seq1  GTTATACCTATTT-AGATCCTTTTTAAATCATCATTTTCACATAGCTGCT  99
      |||||| |||||| |||||| ||||||||||||| |||||||||||||||
seq2  GTTATA-CTATTTAAGATCC-TTTTAAATCATCA-TTTCACATAGCTGCT  95

seq1  ACCATTCAACACTTTTCTTGTTCCCATCTCTTTTGAACAATGTTGTCTAC  149
      ||||||| |||| ||||||||||||||||||||||||||||| |||||||
seq2  ACCATTC-ACAC-TTTCTTGTTCCCATCTCTTTTGAACAATG-TGTCTAC  142

seq1  AAATGGGTCTTTGCTTCATGTATAACCCATATAAACATCTAAGGGACTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGTCTTTGCTTCATGTATAACCCATATAAACATCTAAGGGACTCC  192

seq1  -TACCACGTTCAAATTAAGAGGCAAGGTACCAATGGCCTAAACAGGGACC  248
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACGTTCAAATTAAGAGGCAAGGTACCAATGGCCTAAACAGGGACC  242

seq1  TAGAGACATT-CCTTGCTCTGTTAGTTAGCTTTTCCTGTGGTTAGAACCA  297
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACATTCCCTTGCTCTGTTAGTTAGCTTTTCCTGTGGTTAGAACCA  292

seq1  AAATGCCTGACACCAATAACTCAATGAAAGAAAGCATTTGGGGAGGCAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCTGACACCAATAACTCAATGAAAGAAAGCATTTGGGGAGGCAGG  342

seq1  TGTGGTTTCTGAGAATTCAGGCTCTGGTTACTTGTTCACCTAGGCAAAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTCTGAGAATTCAGGCTCTGGTTACTTGTTCACCTAGGCAAAAT  392

seq1  CTTGGCAAAAGAAACATGCTACTGAGTGGAGCTGACTGTTTACTTCCTAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAAAAGAAACATGCTACTGAGTGGAGCTGACTGTTTACTTCCTAG  442

seq1  CCAACAGAGCTCAGAAGAGTAAAACAGAAAGCTGTCAGGGATTATGTGGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGAGCTCAGAAGAGTAAAACAGAAAGCTGTCAGGGATTATGTGGG  492

seq1  AAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGACATCCTGTGTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGACATCCTGTGTTC  542

seq1  TAAGTTGGTAAACAAATAATTTGCGCATGAGCCAAGGGTATTTACGACTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGGTAAACAAATAATTTGCGCATGAGCCAAGGGTATTTACGACTA  592

seq1  CTTGTACTCTGTTTTTCCCGTGAACGTCAGCTCGGCCATGGGCTGCAGCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACTCTGTTTTTCCCGTGAACGTCAGCTCGGCCATGGGCTGCAGCC  642

seq1  AATCAGGGAGTGATGCGTCCTAGGCAATTGTTGTTCTCTTTTAAATAGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGGAGTGATGCGTCCTAGGCAATTGTTGTTCTCTTTTAAATAGAA  692

seq1  GGGGTTTCGTTTTTCTCTCTCTCTTGCTTCTTACACTCTGGCCCCAAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTCGTTTTTCTCTCTCTCTTGCTTCTTACACTCTGGCCCCAAAAA  742

seq1  GATGTAAGCAATAAAGCTTTGCCGTAGAAGATTCTGGTTGTTGTGTTCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAAGCAATAAAGCTTTGCCGTAGAAGATTCTGGTTGTTGTGTTCTT  792

seq1  CCTGGCCGGTCGTGAGAACGCGACGAATAACAATTGGTGCCGAAACCCGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCGGTCGTGAGAACGCGACGAATAACAATTGGTGCCGAAACCCGG  842

seq1  GATGAGAAAAAACTCCGGACTGGCGCAGGAGGGATACTTCATTTCAGAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAAAAAACTCCGGACTGGCGCAGGAGGGATACTTCATTTCAGAAC  892

seq1  CAGAACTGCGGATCACGTTTATAAAGGTTCCCGTAACACAGACTGTTGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGCGGATCACGTTTATAAAGGTTCCCGTAACACAGACTGTTGAG  942

seq1  AAGGATTCAACTGCCGAATTCAGAACTCATCAGCTGGGGA  987
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTCAACTGCCGAATTCAGAACTCATCAGCTGGGGA  982