BAC Information

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BAC

Clone NameB6Ng01-139E14
Chromosome1 (Build37)
Map Location 191,120,156 - 191,302,927
singlet/doubletdoublet
Overlap geneKcnk2, LOC100039307
Upstream geneUsh2a, Kctd3, LOC100042424
Downstream geneCenpf, Ptpn14, LOC100042438, Smyd2, Prox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139E14.bB6Ng01-139E14.g
ACCDH938310DH938311
length479902
definitionDH938310|Mus musculus domesticus DNA, BAC clone: B6Ng01-139E14, 5' end.DH938311|Mus musculus domesticus DNA, BAC clone: B6Ng01-139E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(191,120,156 - 191,120,640)(191,302,023 - 191,302,927)
sequence
ttccaggatgagaatcacccaaggccatcataagcagagttcatgggaac
cacagggatctacatgttccttgtgtatgccacatatgtagtagactaag
agatggcatgaccagaccctctggaagtgtgaatgacatagattttatat
agaggtggatgctcgcagccaaccattggactgaacacagggtccccaat
ggaggggttagagaaaggactgaaggggctaaaggggtttgcaaccccat
aggaaaaacaataatatcaaccaatcagaccctcacagagctcccaggga
ctaaaccaccatccaaatggtacacatggagcaacccatggctccagcct
catatatagcagaggatgaccttgccgggaatcaatgggaggagaggccc
ttggtcctgtgaaggctctatgccccagtgtaggggaatgccagggtggg
gaggctgaagtgggtaggtaggtggggga
gaattctgaagtgccactcagtattccacctacctctggcacgaggaaga
tcagaaggttgggcaacttgacatgactttgacgtgttaaacactgaaca
gtgctgcactggatgagaagttctttggaagaagaccctgagaacagcta
tttttgcaggaatctctgcacccagtgattccacatctggggatgattgt
cactagggaaaacgttgtcagtttcttttactttcatttattttattttt
tttttaattttatatggaggaaacccagaagtgccagaagcacatagcta
ttgatcaagtgtttgcgttagtcattatgatggcaaaattgatttggact
ttgtagactcatttgtcaaaaagcttggaaatatgatacactggtaatta
aagcaaaggtgattacacttgcctcctcgactaagaagaaagacaataag
tagtacctgctaattgaagtcaggctgactcccaacttatgttcccatta
gcttgattagatcaaggagactgcgcacacagctattgtagtttgatgaa
gaacatcgggattgtcatgagggtaagggacggggagtgtggagctaaca
caatgagtctacaatgaaatacagaaaagttgtaggtttaaaaaaggaaa
aatgtgagttttccaggagtccaagaaagtcaagcagaatgatccatatt
agcgggcttccctggggtcggagggagccttgcgttttggctgagagcca
attacatatctttgtttcaccagatgacaactgagtcaagtttggagtca
cctacagtccgatccagaccttctgtgaagccctgccagctgatgatatg
tccctgggcctctgagaaaattgctgactatcccaggcttcagaagtttg
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_191120156_191120640
seq2: B6Ng01-139E14.b_48_532

seq1  GAATTCTTCCAGGATGAGAATCACCCAAGGCCATCATAAGCAGAGTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAGGATGAGAATCACCCAAGGCCATCATAAGCAGAGTTCAT  50

seq1  GGGAACCACAGGGATCTACATGTTCCTTGTGTATGCCACATATGTAGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCACAGGGATCTACATGTTCCTTGTGTATGCCACATATGTAGTAG  100

seq1  ACTAAGAGATGGCATGACCAGACCCTCTGGAAGTGTGAATGACATAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAGATGGCATGACCAGACCCTCTGGAAGTGTGAATGACATAGATT  150

seq1  TTATATAGAGGTGGATGCTCGCAGCCAACCATTGGACTGAACACAGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGAGGTGGATGCTCGCAGCCAACCATTGGACTGAACACAGGGTC  200

seq1  CCCAATGGAGGGGTTAGAGAAAGGACTGAAGGGGCTAAAGGGGTTTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGGAGGGGTTAGAGAAAGGACTGAAGGGGCTAAAGGGGTTTGCAA  250

seq1  CCCCATAGGAAAAACAATAATATCAACCAATCAGACCCTCACAGAGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAGGAAAAACAATAATATCAACCAATCAGACCCTCACAGAGCTCC  300

seq1  CAGGGACTAAACCACCATCCAAATGGTACACATGGAGCAACCCATGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACTAAACCACCATCCAAATGGTACACATGGAGCAACCCATGGCTC  350

seq1  CAGCCTCATATATAGCAGAGGATGACCTTGCCGGGAATCAATGGGAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCATATATAGCAGAGGATGACCTTGCCGGGAATCAATGGGAGGAG  400

seq1  AGGCCCTTGGTCCTGTGAAGGCTCTATGCCCCAGTGTAGGGGAATGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTTGGTCCTGTGAAGGCTCTATGCCCCAGTGTAGGGGAATGCCAG  450

seq1  GGTGGGGAGGCTGAAGTGGGTAGGTAGGTGGGGGA  485
      |||||||||||||||||||||||||||||||||||
seq2  GGTGGGGAGGCTGAAGTGGGTAGGTAGGTGGGGGA  485

seq1: chr1_191302023_191302927
seq2: B6Ng01-139E14.g_72_973 (reverse)

seq1  AGCAAACTCCTGAAGCCTGGGATAGTCAGCATTTTTCTCAGAGGCCCAGG  50
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  AGCAAACTTCTGAAGCCTGGGATAGTCAGCAATTTTCTCAGAGGCCCAGG  50

seq1  GACATCTCATCAGCTGGCAGGGCTTCACAGAAGGTCTGGATCGGACTGTT  100
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  GACATATCATCAGCTGGCAGGGCTTCACAGAAGGTCTGGATCGGACTG-T  99

seq1  CGGTGACTCCAAACTTGACCTCAGTTGTCATCTGGTGAAACAAAGATATG  150
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGGTGACTCCAAACTTGA-CTCAGTTGTCATCTGGTGAAACAAAGATATG  148

seq1  TAATTTGGCTCTCAGCC-AAACGCAAGGCTCCCTTCCGACCCCAGGGAAG  199
      ||| ||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  TAA-TTGGCTCTCAGCCAAAACGCAAGGCTCCC-TCCGACCCCAGGGAAG  196

seq1  CCCGCTAATATGGATCATTCTGCTTGACTTTCTTGGACTCCTGGAAAACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTAATATGGATCATTCTGCTTGACTTTCTTGGACTCCTGGAAAACT  246

seq1  CACATTTTTCCTTTTTTAAACCTACAACTTTTCTGTATTTCATTGTAGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTTCCTTTTTTAAACCTACAACTTTTCTGTATTTCATTGTAGAC  296

seq1  TCATTGTGTTAGCTCCACACTCCCCGTCCCTTACCCTCATGACAATCCCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTGTTAGCTCCACACTCCCCGTCCCTTACCCTCATGACAATCCCG  346

seq1  ATGTTCTTCATCAAACTACAATAGCTGTGTGCGCAGTCTCCTTGATCTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTCATCAAACTACAATAGCTGTGTGCGCAGTCTCCTTGATCTAA  396

seq1  TCAAGCTAATGGGAACATAAGTTGGGAGTCAGCCTGACTTCAATTAGCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTAATGGGAACATAAGTTGGGAGTCAGCCTGACTTCAATTAGCAG  446

seq1  GTACTACTTATTGTCTTTCTTCTTAGTCGAGGAGGCAAGTGTAATCACCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTACTTATTGTCTTTCTTCTTAGTCGAGGAGGCAAGTGTAATCACCT  496

seq1  TTGCTTTAATTACCAGTGTATCATATTTCCAAGCTTTTTGACAAATGAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTAATTACCAGTGTATCATATTTCCAAGCTTTTTGACAAATGAGT  546

seq1  CTACAAAGTCCAAATCAATTTTGCCATCATAATGACTAACGCAAACACTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTCCAAATCAATTTTGCCATCATAATGACTAACGCAAACACTT  596

seq1  GATCAATAGCTATGTGCTTCTGGCACTTCTGGGTTTCCTCCATATAAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATAGCTATGTGCTTCTGGCACTTCTGGGTTTCCTCCATATAAAAT  646

seq1  TAAAAAAAAAATAAAATAAATGAAAGTAAAAGAAACTGACAACGTTTTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAATAAAATAAATGAAAGTAAAAGAAACTGACAACGTTTTCC  696

seq1  CTAGTGACAATCATCCCCAGATGTGGAATCACTGGGTGCAGAGATTCCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGACAATCATCCCCAGATGTGGAATCACTGGGTGCAGAGATTCCTG  746

seq1  CAAAAATAGCTGTTCTCAGGGTCTTCTTCCAAAGAACTTCTCATCCAGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAGCTGTTCTCAGGGTCTTCTTCCAAAGAACTTCTCATCCAGTG  796

seq1  CAGCACTGTTCAGTGTTTAACACGTCAAAGTCATGTCAAGTTGCCCAACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGTTCAGTGTTTAACACGTCAAAGTCATGTCAAGTTGCCCAACC  846

seq1  TTCTGATCTTCCTCGTGCCAGAGGTAGGTGGAATACTGAGTGGCACTTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCTTCCTCGTGCCAGAGGTAGGTGGAATACTGAGTGGCACTTCA  896

seq1  GAATTC  905
      ||||||
seq2  GAATTC  902