BAC Information

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BAC

Clone NameB6Ng01-139P03
Chromosome1 (Build37)
Map Location 102,494,018 - 102,621,847
singlet/doubletdoublet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139P03.bB6Ng01-139P03.g
ACCDH938802DH938803
length1,163779
definitionDH938802|Mus musculus domesticus DNA, BAC clone: B6Ng01-139P03, 5' end.DH938803|Mus musculus domesticus DNA, BAC clone: B6Ng01-139P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,620,658 - 102,621,847)(102,494,018 - 102,494,793)
sequence
gaattccttaaacacaacttgatacatgttatatatacaaattccaacct
tccacattgtacctcgagtagaaagaaaaactaagtttgaccactagagg
ttatataaatgtagaaagagaaaacaaattccataaaactgttcttggac
caccatatgcacattgtacaacaagtacccccaactgtacagacagacta
atgacaggcacacacacatagtaagtaagtaagtacgtaagtaattaatt
aagtaagtaagtaaataaataaataagtataagttttatttttcaagtca
accaactacaaccagtacgaagaaacaacttcttcttcttcttcttcttc
ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt
cttcttcttcttcctcttctttttacatttgtctaagggctcattgctct
agctgcacatgcagcagagaattgtctagttggtcatcaatgggaggaga
gactcttgatcctgcaaaagttttatgcaccagtataggggaattccagg
gccaggaagcgagagtaggaagacacctctgtaagagctacaatgatccc
cagagggtaaaggaagggctaaaccacaacctgtatcttatacagataac
agtggcctgtgtaagctagacagttgggtgagcaacaaaaaacaattttg
ggacttgtgtgagctttccagccccttcatttcaatttctttgaattgac
ctagtagacaaagtttgttcagttgatgttttactgccatctgctacgaa
agtatgatgataaatgccctgccttccaagtgatggcagctgctcctgta
tttaggaatgaggaagaagatacatttcttctttccatgacctctggata
caggaccatcatgaaaatttcaagtcattactattttggatgtcatatac
tatcataatagatgaccacagcaaagcccaacttgtgaaatatgaatcag
tgatcttgggttcatagacttctatgctcattcataagctagaaagagga
aatgactttttattttcattttgaaatttttgttgattatttgttgctac
aaatcttgctgcttgcaatcgctgaaactgttcaaagcctctccaaccct
ctgactctcccct
gaattcttgatatggatgaagggtcaggagtttgttgatgagattcaagc
tagatatcctcatctcttgagcagcttttgtccactgcagacaccccagg
ggaagaaaatgctgacttgtacatttcagccctggagaaagttcagaaga
tgtcatcatgaagagcatgccagtggctaaagtttagaaggattttaaag
ctgatagtggtaataaaatgttaaaaaataaagtagtttgaaaatactcc
agggaatgaggtaggaataactacagttattttacaaacagtaatattag
gagaaatgttgctgcaagaaaaattatcacttctcattgataacaactca
ttctatttcaataaagctcactctgatatttatgtacttaattatgtgcc
atgtttcaaatttatgataaaatattgatagtctaacatgaacttattaa
cagatatatatatttatatttatatatatatatatatatatatatatata
tatatatttatatatatctatatcagtctctataaaagaccacatatagg
ccaaaatatgtcaccatattccacagaactagttatggatgattgggagt
catacgggggcgcacgccatgtgttaactgataattaagattataaatat
aaaagatagataggacatataacaactcaaatactagaattaagttatgc
atattattttctttggcaaataaagcaggccactactaatttaataaaaa
agtgtggttgttaagtcttattagttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_102620658_102621847
seq2: B6Ng01-139P03.b_45_1207 (reverse)

seq1  AGGGGAGAGTCAAGAGGGTGTGAGAGGCTTTTGAAACAGGTTTCAAGCCG  50
      ||||||||||| |||||||  ||||||||||   |||| ||||||   ||
seq2  AGGGGAGAGTC-AGAGGGTTGGAGAGGCTTT--GAACA-GTTTCA--GCG  44

seq1  ATTGCAAGGACAGGCAAGATTTGGGTAGGCAAC-AATAATACAACAAAAA  99
      |||||||| |   |||||||||  ||| ||||| |||||| |||||||||
seq2  ATTGCAAGCA---GCAAGATTT--GTA-GCAACAAATAAT-CAACAAAAA  87

seq1  TTTTCAAAATGGAAAAATAAAAAGGTTCATTTCCTCTTTCTAGCTTATGA  149
       ||||||||||  |||||||||||  ||||||||||||||||||||||||
seq2  -TTTCAAAATG--AAAATAAAAAG--TCATTTCCTCTTTCTAGCTTATGA  132

seq1  ATGGAGCATAGAAGTCTGATGAACCCCAAGATCACTGATTCCATATGTCA  199
      || |||||||||||||| ||||| |||||||||||||||| ||||| |||
seq2  AT-GAGCATAGAAGTCT-ATGAA-CCCAAGATCACTGATT-CATATTTCA  178

seq1  CAAGTTGGGCTTTGCTGTGGTCATTCTATTATGATTAGTATATGAACATC  249
      ||||||||||||||||||||||| |||||||||| ||||||||| |||||
seq2  CAAGTTGGGCTTTGCTGTGGTCA-TCTATTATGA-TAGTATATG-ACATC  225

seq1  CAAAATAGTTAATGACTTGAAATTTTTCATGATGGTCCTGTATCCAGAGG  299
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  CAAAATAG-TAATGACTTGAAA-TTTTCATGATGGTCCTGTATCCAGAGG  273

seq1  TCATGGAAAGAAGAAATGTATCTTCTTCCTCATTCCTAAATACAGGAGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAAAGAAGAAATGTATCTTCTTCCTCATTCCTAAATACAGGAGCA  323

seq1  GCTGCCATTCACTTGGAAGGCAGGGCATTTATCATCATACTTTCGTAGCA  399
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCA-TCACTTGGAAGGCAGGGCATTTATCATCATACTTTCGTAGCA  372

seq1  GATGGCAGTAAAACATCAACTGAACAAACCTTGTCTACTAGGTCAATTCA  449
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GATGGCAGTAAAACATCAACTGAACAAACTTTGTCTACTAGGTCAATTCA  422

seq1  AAGAAATTGAAATGAAGGGGCTGGAAAGCTCACACAAGTCCCAAAATTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTGAAATGAAGGGGCTGGAAAGCTCACACAAGTCCCAAAATTGT  472

seq1  TTTTTGTTGCTCACCCAACTGTCTAGCTTACACAGGCCACTGTTATCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGCTCACCCAACTGTCTAGCTTACACAGGCCACTGTTATCTGT  522

seq1  ATAAGATACAGGTTGTGGTTTAGCCCTTCCTTTACCCTCTGGGGATCATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATACAGGTTGTGGTTTAGCCCTTCCTTTACCCTCTGGGGATCATT  572

seq1  GTAGCTCTTACAGAGGTGTCTTCCTACTCTCGCTTCCTGGCCCTGGAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCTTACAGAGGTGTCTTCCTACTCTCGCTTCCTGGCCCTGGAATT  622

seq1  CCCCTATACTGGTGCATAAAACTTTTGCAGGATCAAGAGTCTCTCCTCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATACTGGTGCATAAAACTTTTGCAGGATCAAGAGTCTCTCCTCCC  672

seq1  ATTGATGACCAACTAGACAATTCTCTGCTGCATGTGCAGCTAGAGCAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGACCAACTAGACAATTCTCTGCTGCATGTGCAGCTAGAGCAATG  722

seq1  AGCCCTTAGACAAATGTAAAAAGAAGAGGAAGAAGAAGAAGAAGAAGAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTAGACAAATGTAAAAAGAAGAGGAAGAAGAAGAAGAAGAAGAAG  772

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  822

seq1  GAAGAAGAAGAAGTTGTTTCTTCGTACTGGTTGTAGTTGGTTGACTTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAGTTGTTTCTTCGTACTGGTTGTAGTTGGTTGACTTGAA  872

seq1  AAATAAAACTTATACTTATTTATTTATTTACTTACTTACTTAATTAATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACTTATACTTATTTATTTATTTACTTACTTACTTAATTAATTA  922

seq1  CTTACGTACTTACTTACTTACTATGTGTGTGTGCCTGTCATTAGTCTGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGTACTTACTTACTTACTATGTGTGTGTGCCTGTCATTAGTCTGTC  972

seq1  TGTACAGTTGGGGGTACTTGTTGTACAATGTGCATATGGTGGTCCAAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTTGGGGGTACTTGTTGTACAATGTGCATATGGTGGTCCAAGAA  1022

seq1  CAGTTTTATGGAATTTGTTTTCTCTTTCTACATTTATATAACCTCTAGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTATGGAATTTGTTTTCTCTTTCTACATTTATATAACCTCTAGTG  1072

seq1  GTCAAACTTAGTTTTTCTTTCTACTCGAGGTACAATGTGGAAGGTTGGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACTTAGTTTTTCTTTCTACTCGAGGTACAATGTGGAAGGTTGGAA  1122

seq1  TTTGTATATATAACATGTATCAAGTTGTGTTTAAGGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATATATAACATGTATCAAGTTGTGTTTAAGGAATTC  1163

seq1: chr1_102494018_102494793
seq2: B6Ng01-139P03.g_69_847

seq1  GAATTCTTGATATGGATGAAGGGTCAGGAGTTTGTTGATGAGATTCAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATATGGATGAAGGGTCAGGAGTTTGTTGATGAGATTCAAGC  50

seq1  TAGATATCCTCATCTCTTGAGCAGCTTTTGTCCACTGCAGACACCCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATCCTCATCTCTTGAGCAGCTTTTGTCCACTGCAGACACCCCAGG  100

seq1  GGAAGAAAATGCTGACTTGTACATTTCAGCCCTGGAGAAAGTTCAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAATGCTGACTTGTACATTTCAGCCCTGGAGAAAGTTCAGAAGA  150

seq1  TGTCATCATGAAGAGCATGCCAGTGGCTAAAGTTTAGAAGGATTTTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCATGAAGAGCATGCCAGTGGCTAAAGTTTAGAAGGATTTTAAAG  200

seq1  CTGATAGTGGTAATAAAATGTTAAAAAATAAAGTAGTTTGAAAATACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGTGGTAATAAAATGTTAAAAAATAAAGTAGTTTGAAAATACTCC  250

seq1  AGGGAATGAGGTAGGAATAACTACAGTTATTTTACAAACAGTAATATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGAGGTAGGAATAACTACAGTTATTTTACAAACAGTAATATTAG  300

seq1  GAGAAATGTTGCTGCAAGAAAAATTATCACTTCTCATTGATAACAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGTTGCTGCAAGAAAAATTATCACTTCTCATTGATAACAACTCA  350

seq1  TTCTATTTCAATAAAGCTCACTCTGATATTTATGTACTTAATTATGTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTCAATAAAGCTCACTCTGATATTTATGTACTTAATTATGTGCC  400

seq1  ATGTTTCAAATTTATGATAAAATATTGATAGTCTAACATGAACTTATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCAAATTTATGATAAAATATTGATAGTCTAACATGAACTTATTAA  450

seq1  CAGATATATATATTTATATTTATATATATATATATATATATATATATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATATATATTTATATTTATATATATATATATATATATATATATATA  500

seq1  TATATATTTTAATCAATCACTACCATTCTCATTAAAAGACCACATAGAGG  550
      |||||||||  ||  |||  || || ||||  |||||||||||||| |||
seq2  TATATATTTATATATATCTATATCAGTCTCTATAAAAGACCACATATAGG  550

seq1  CCAAAAGATGTCACCATATTCCACAGAACTAGTTATGGATGATTGTGAGT  600
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  CCAAAATATGTCACCATATTCCACAGAACTAGTTATGGATGATTGGGAGT  600

seq1  CATACAGTGGCTCACACCATGTGTTAACTTATAATTAAGATTATAAATAT  650
      ||||| | ||| ||| ||||||||||||| ||||||||||||||||||||
seq2  CATACGGGGGCGCACGCCATGTGTTAACTGATAATTAAGATTATAAATAT  650

seq1  AAATTATAGATAGGACATATAACAACTCAAATACTAGAATTAAGTTATGC  700
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATAGATAGGACATATAACAACTCAAATACTAGAATTAAGTTATGC  700

seq1  ATA-TAATTTCTTT-GCAAATAAAGCAGGCCACTACTAA-TTAAT-AGAA  746
      ||| || ||||||| |||||||||||||||||||||||| ||||| | ||
seq2  ATATTATTTTCTTTGGCAAATAAAGCAGGCCACTACTAATTTAATAAAAA  750

seq1  AGTGTGGTTGTTAAGCCTTATTAGGTTCAT  776
      ||||||||||||||| ||||||| ||||||
seq2  AGTGTGGTTGTTAAGTCTTATTA-GTTCAT  779