BAC Information

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BAC

Clone NameB6Ng01-140L09
Chromosome1 (Build37)
Map Location 81,367,323 - 81,583,918
singlet/doubletdoublet
Overlap geneEG621020
Upstream geneEG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
Downstream geneLOC433328, EG665145, Irs1, Rhbdd1, Col4a4, Col4a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140L09.bB6Ng01-140L09.g
ACCDH939363DH939364
length1,0531,058
definitionDH939363|Mus musculus domesticus DNA, BAC clone: B6Ng01-140L09, 5' end.DH939364|Mus musculus domesticus DNA, BAC clone: B6Ng01-140L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,367,323 - 81,368,393)(81,582,839 - 81,583,918)
sequence
gaattctttccaggaaggagataaaatgctcctgagatcaactcctgtgt
ctgagaaagctgaaataagagtctcgaaaggccctctctccatggttata
gaagaaaagaataactgctgagggaggagactgaccagctgcgctgtctg
gaaggggtctctgcaaaatattgggctggctacaggttatgcagagagtg
atcctggactgcaggtttcttaaaatgagatggaatgggaaattttggta
atacagcagcttgtgaatcttctctcgctcatactcaagttagtgactcc
aataaaaactcaatggttcaccaaattggagttcaatgcatttgatacat
tgcaaacggaatacataataaactttgaggcattcacagaaagataatat
tcggcctacacatttgatatattgtgtttggtttctctacatcaatgtta
ttcatatgatttttagtgtattagtgaaggatgttaatatagtgcttttg
cttcacttcttaggaagttttcatcttcagtcatgcttatatgataactg
ataagttttttattaccatgattattggcttttaccattccatttacctg
ctctgtgtgcaaagcaatggataaaagcattagaatgtgcatatatgatt
gcttggcaattaaattataatacaaggattaaggcctccttgagagtgag
acagagatttgcagttcataatgtatgaagaggctgctttaatttgtttt
cttctctttttttgtaagcatgattttacattagtgtctcataatgcatg
ctgttctcaatttgggtgtgtgtgtagtggataagaaagtcttcagaatt
aactggcatggttgactttccagagaaattagaaatgtgtaaaatatgag
cattgatctcctcatcagaattatagctgacccagcagagtgttaagtgg
tcatagagaaaaaccacttatctatgtaagatgagagaaccagtagaata
tgcacaattgtgttgtagtgtgagcacagcctcaagaaatgtaccctact
gta
gaattctattagactgaaggtcctcaactacaactcatagataaaagtaa
acaaagtagaaaaggaatgaagaaaagaaagaggaaaaagaaattatttt
tggaaagttacatttttatcatcgcctatatttttaactactgctagggg
tctccatgactgcattgcacaattccagaattgagaatgagaatgcaaag
ctggtatactggaatttactttgtacaactggttgacacaataacaaata
ctttcaattatctgtagtgccattgggtaatggaccaatgatccttcttc
cacttaagcatgttcccaggtttttctgcatatgtggttaacataacaaa
aacacacctttgcaatagaatcacagtgttgggactgtatacttaaagtt
tttcaatctattcttgtatactttctataaccagtatttgctgattttgt
cctatttttatatctgtacaaatttctaaatatgactttcgccagaaata
tgtttatttattagaaacttttgtcacctgatttctatgaatagtcctat
atacactcaatgtttctttgtgttttctttttaataggaaatgaggttgt
tgtttatactatcgttttgtgaaatagaatatttgaaagcatctcaaaat
ttatcaatattaagtgttcttttattttggtttttggtatttgtagtcaa
agttgacatttatatacattttattatatgcatgttatacacactggatc
attttccaatggattaatcttattttacatgaagtttttttctctatagt
tgaggaaagtttctttcccttgtagtctctgcttccaaactgcaattgtg
tttctcaaaccgtgaagatgtagtttaaacaaattcaagtctatgaagga
tcataatcaatcagtctcccagcaaaagggggcaggggagtagaagtaga
gggaaagaggagaggaaagggagcctagtgtgaggagactaaattcatgt
gtttattactataaaataatatctacaaactgtctagttctcctactgtc
taccatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_81367323_81368393
seq2: B6Ng01-140L09.b_49_1101

seq1  GAATTCTTTCCAGGAAGGAGATAAAATGCTCCTGAGATCAACTCCTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCAGGAAGGAGATAAAATGCTCCTGAGATCAACTCCTGTGT  50

seq1  CTGAGAAAGCTGAAATAAGAGTCTCGAAAGGCCCTCTCTCCATGGTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAGCTGAAATAAGAGTCTCGAAAGGCCCTCTCTCCATGGTTATA  100

seq1  GAAGAAAAGAATAACTGCTGAGGGAGGAGACTGACCAGCTGCGCTGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGAATAACTGCTGAGGGAGGAGACTGACCAGCTGCGCTGTCTG  150

seq1  GAAGGGGTCTCTGCAAAATATTGGGCTGGCTACAGGTTATGCAGAGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGTCTCTGCAAAATATTGGGCTGGCTACAGGTTATGCAGAGAGTG  200

seq1  ATCCTGGACTGCAGGTTTCTTAAAATGAGATGGAATGGGAAATTTTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGACTGCAGGTTTCTTAAAATGAGATGGAATGGGAAATTTTGGTA  250

seq1  ATACAGCAGCTTGTGAATCTTCTCTCGCTCATACTCAAGTTAGTGACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCAGCTTGTGAATCTTCTCTCGCTCATACTCAAGTTAGTGACTCC  300

seq1  AATAAAAACTCAATGGTTCACCAAATTGGAGTTCAATGCATTTGATACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACTCAATGGTTCACCAAATTGGAGTTCAATGCATTTGATACAT  350

seq1  TGCAAACGGAATACATAATAAACTTTGAGGCATTCACAGAAAGATAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACGGAATACATAATAAACTTTGAGGCATTCACAGAAAGATAATAT  400

seq1  TCGGCCTACACATTTGATATATTGTGTTTGGTTTCTCTACATCAATGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCCTACACATTTGATATATTGTGTTTGGTTTCTCTACATCAATGTTA  450

seq1  TTCATATGATTTTTAGTGTATTAGTGAAGGATGTTAATATAGTGCTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGATTTTTAGTGTATTAGTGAAGGATGTTAATATAGTGCTTTTG  500

seq1  CTTCACTTCTTAGGAAGTTTTCATCTTCAGTCATGCTTATATGATAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTCTTAGGAAGTTTTCATCTTCAGTCATGCTTATATGATAACTG  550

seq1  ATAAGTTTTTTATTACCATGATTATTGGCTTTTACCATTCCATTTACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTTTTATTACCATGATTATTGGCTTTTACCATTCCATTTACCTG  600

seq1  CTCTGTGTGCAAAGCAATGGATAAAAGCATTAGAATGTGCATATATGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTGCAAAGCAATGGATAAAAGCATTAGAATGTGCATATATGATT  650

seq1  GCTTGGCAATTAAATTATAATACAAGGATTAAGGCCTCCTTGAGAGTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCAATTAAATTATAATACAAGGATTAAGGCCTCCTTGAGAGTGAG  700

seq1  ACAGAGATTTGCAGTTCATAATGTATGAAGAGGCTGCTTTAATTTGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATTTGCAGTTCATAATGTATGAAGAGGCTGCTTTAATTTGTTTT  750

seq1  CTTCTCTTTTTTTGTAAGCATGATTTTACATTAGTGTCTCATAATGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTTTTTGTAAGCATGATTTTACATTAGTGTCTCATAATGCATG  800

seq1  CTGTTCTCAATTTGGGTGTGTGTGTAGTGGATAAGAAAGTCTTCAGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCAATTTGGGTGTGTGTGTAGTGGATAAGAAAGTCTTCAGAATT  850

seq1  AACTGGCATGGTTGACTTTCCAGAGAAATTAGAAATGTGTAAAATATGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCATGGTTGACTTTCCAGAGAAATTAGAAATGTGTAAAATATGAG  900

seq1  CATTGATCTCCTCATCAGAATTATAAGCTGAACCCAGCAGAGTGGTTAAG  950
      |||||||||||||||||||||||| ||||| |||||||||||| ||||| 
seq2  CATTGATCTCCTCATCAGAATTAT-AGCTG-ACCCAGCAGAGT-GTTAA-  946

seq1  GTGGTCATAAGAGAAAACACCACTTATCCAAGGGTAAGAATGAAGAGGAA  1000
      |||||||| |||||||| |||||||||| |   ||||| ||| ||||  |
seq2  GTGGTCAT-AGAGAAAA-ACCACTTATCTA--TGTAAG-ATG-AGAG--A  988

seq1  CCCAGTAGATAAGTGCCACAATTGTGTTGTAGTTGTTGAGCACAGTCTCC  1050
       |||||||| |  || |||||||||||||||||   ||||||||| || |
seq2  ACCAGTAGA-ATATG-CACAATTGTGTTGTAGT--GTGAGCACAGCCT-C  1033

seq1  AAGAACTGTTACCCTACTGTA  1071
      ||||| || ||||||||||||
seq2  AAGAAATG-TACCCTACTGTA  1053

seq1: chr1_81582839_81583918
seq2: B6Ng01-140L09.g_68_1125 (reverse)

seq1  GCATGGTTAGAACAGTAGGGAAGAAACTAGAACAGTTTTGTAGATAATTA  50
      |||||| ||| ||||||||  || |||||| |||| ||||||||| ||||
seq2  GCATGG-TAG-ACAGTAGG--AG-AACTAG-ACAG-TTTGTAGAT-ATTA  42

seq1  ATTTTTATAGTAATAAACACAATGAATTTAAGTTCTCCCTCACACTAGGC  100
        |||||||||||||||||| |||||||||   ||| |||||||||||||
seq2  --TTTTATAGTAATAAACAC-ATGAATTTA--GTCT-CCTCACACTAGGC  86

seq1  TCTCCTTTCCTCTTCCTCTTTTCCCTTCTACTTCTACTCCCCCTGCCCCC  150
      || ||||||||| ||||||||  || |||||||||||| |||||||||||
seq2  TC-CCTTTCCTC-TCCTCTTT--CCCTCTACTTCTACT-CCCCTGCCCCC  131

seq1  CTTTTTGCTGGGGGACTGATTGATTATGATTCCTTCATAGACTTGAATTT  200
        |||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  --TTTTGCTGGGAGACTGATTGATTATGA-TCCTTCATAGACTTGAATTT  178

seq1  GTTTAAACTACATCTTCACGGTTTGAGAAACACAATTGCAGTTTGGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAACTACATCTTCACGGTTTGAGAAACACAATTGCAGTTTGGAAGC  228

seq1  AGAGACTACAAGGGAAAGAAACTTTCCTCAACTATAGAGAAAAAAACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTACAAGGGAAAGAAACTTTCCTCAACTATAGAGAAAAAAACTTC  278

seq1  ATGTAAAATAAGATTAATCCATTGGAAAATGATCCAGTGTGTATAACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAATAAGATTAATCCATTGGAAAATGATCCAGTGTGTATAACATG  328

seq1  CATATAATAAAATGTATATAAATGTCAACTTTGACTACAAATACCAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATAAAATGTATATAAATGTCAACTTTGACTACAAATACCAAAAA  378

seq1  CCAAAATAAAAGAACACTTAATATTGATAAATTTTGAGATGCTTTCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATAAAAGAACACTTAATATTGATAAATTTTGAGATGCTTTCAAAT  428

seq1  ATTCTATTTCACAAAACGATAGTATAAACAACAACCTCATTTCCTATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTTCACAAAACGATAGTATAAACAACAACCTCATTTCCTATTAA  478

seq1  AAAGAAAACACAAAGAAACATTGAGTGTATATAGGACTATTCATAGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACACAAAGAAACATTGAGTGTATATAGGACTATTCATAGAAAT  528

seq1  CAGGTGACAAAAGTTTCTAATAAATAAACATATTTCTGGCGAAAGTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGACAAAAGTTTCTAATAAATAAACATATTTCTGGCGAAAGTCATA  578

seq1  TTTAGAAATTTGTACAGATATAAAAATAGGACAAAATCAGCAAATACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAATTTGTACAGATATAAAAATAGGACAAAATCAGCAAATACTGG  628

seq1  TTATAGAAAGTATACAAGAATAGATTGAAAAACTTTAAGTATACAGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAAAGTATACAAGAATAGATTGAAAAACTTTAAGTATACAGTCCC  678

seq1  AACACTGTGATTCTATTGCAAAGGTGTGTTTTTGTTATGTTAACCACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTGATTCTATTGCAAAGGTGTGTTTTTGTTATGTTAACCACATA  728

seq1  TGCAGAAAAACCTGGGAACATGCTTAAGTGGAAGAAGGATCATTGGTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAAAACCTGGGAACATGCTTAAGTGGAAGAAGGATCATTGGTCCA  778

seq1  TTACCCAATGGCACTACAGATAATTGAAAGTATTTGTTATTGTGTCAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAATGGCACTACAGATAATTGAAAGTATTTGTTATTGTGTCAACC  828

seq1  AGTTGTACAAAGTAAATTCCAGTATACCAGCTTTGCATTCTCATTCTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTACAAAGTAAATTCCAGTATACCAGCTTTGCATTCTCATTCTCAA  878

seq1  TTCTGGAATTGTGCAATGCAGTCATGGAGACCCCTAGCAGTAGTTAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAATTGTGCAATGCAGTCATGGAGACCCCTAGCAGTAGTTAAAAA  928

seq1  TATAGGCGATGATAAAAATGTAACTTTCCAAAAATAATTTCTTTTTCCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCGATGATAAAAATGTAACTTTCCAAAAATAATTTCTTTTTCCTC  978

seq1  TTTCTTTTCTTCATTCCTTTTCTACTTTGTTTACTTTTATCTATGAGTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTTCATTCCTTTTCTACTTTGTTTACTTTTATCTATGAGTTG  1028

seq1  TAGTTGAGGACCTTCAGTCTAATAGAATTC  1080
      ||||||||||||||||||||||||||||||
seq2  TAGTTGAGGACCTTCAGTCTAATAGAATTC  1058