BAC Information

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BAC

Clone NameB6Ng01-141F14
ChromosomeX (Build37)1 (Build37)
Map Location 100,165,945 - 100,166,481130,774,314 - 130,775,385
singlet/doubletsingletsinglet
Overlap geneEG331480
Upstream geneRgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080, Cited1, Hdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik
Downstream geneEG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141F14.bB6Ng01-141F14.g
ACCDH939829DH939830
length1,0591,069
definitionDH939829|Mus musculus domesticus DNA, BAC clone: B6Ng01-141F14, 5' end.DH939830|Mus musculus domesticus DNA, BAC clone: B6Ng01-141F14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,165,945 - 100,166,481)(130,774,314 - 130,775,385)
sequence
gaattctttgtttagctctgagccccatttttaatgggttatttgatttt
ctggagtccaccttcttgagttctttatatatattgtatattagtcccct
atctgatttaggataggtaaagatcctttcccaatctgttggtggccttt
ttgtcttattgacagtgtcttttgccttgcagaggctttgcaattttatg
aggtcccatttgtcgattcttgatattacagcacaagccattgctgttct
attcaggaatttttcccctgtgcccatatcctcaaggcttttccctacct
tctcctctataagtttcagtgtctctggttttatgtggagttccttaatc
cacttagatttgaccttagtacaaggatataggaatggatcagtttgcat
tcttctacatgataacaaccagttgtgccagcaccatttgttgaaaatgc
tgtctttttttccactggatagtttttgctcccttgtcaaagatcaagtg
accatacctgtgtgggttcatttctgggccttcaattctattccactggt
ctatttgtctgtcgctatactagtaccatggagttttttatcacaattgc
tctgtagtacagctttaggtccagcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcagatcaccctttctaatttcgttgaaaaattgagttgggattt
tgatagggattgcattgaatctgtagattgcttttggcaggatagtcatt
tttactatattgatcctcccaatccatgaacatgggagatctttccatct
tctgagatcttctttaacttctttcttcagagacttgaagttcttttata
cagatctttcacttccctagtaaagtcacaccaaggtattttatgtattt
gtgactatgagaaggtgttgtttcttaattcttctagcctgttatccttg
tgtagagaaggcatgacttgttgagttaattttatatcagctacttcact
gaagctgtt
gaattccagccttatgggaaaacagaagcagtcattcactcgctcactca
ttcctcaccaacaggattgtgaggataaagagacagttaggtaccattct
gcacagcagggtgggaaagagttgggaggggctgttcttagttccagagg
aaaggtaccatttgcaagtggtgctctgcaggctgggaaacaaggccaaa
gtgggagctagaggacactgatacccagcagggacttgagagtctggaca
gtctagcggtgtggtttgcagtaagcagagtttactatcagagacaatca
tctatctgctggttctgtgacccagtgggtagggtgcttgccatgaatgc
acagagccttgtatttgacccacccagcactgagttaactcagcatgatg
acacacatctgtattcacagcattcaagacatggaggatcaaaagttcat
ggtcatcgatagattatacagtgaattgagaccagcttggactataagag
gctatgccttaaaacgaaatcgaaacaaactaaaacaagtatccagcaac
acaaaacacaacaagctatagaaggccttcctttggaattccatggaccc
agtacttcttggggaatacaggcttggctgtgctgagctgagctgagttg
atgttcatgggtgaaatgcaggtctgaagttataaaatagacactttctt
tagggatggtgtggctcatatcctccccacactgtctgcttccatccacc
cacctgcctggcttacaagctctgcttcttgtaggcaggagattggcagc
caaaactgtagtgtctagaacattggcttactgtgtggctatgatagctg
ttattgtcctttctttcttaagggctgagatgggttctaaggctgtttag
aagattaaggaaattcagggtccagtttactgggctagattttatttggg
gcatctttaaaacattttaacgatttcatgcacattatatagaactttgg
taatttttattccgttagtattccttcttcttcacctctctccatctttc
tcattggtctccttttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_100165945_100166481
seq2: B6Ng01-141F14.b_589_1109 (reverse)

seq1  AACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAAT  50
      ||||||||||||||||||||| |||||||||||||||| |||||||| ||
seq2  AACAGCTTCAGTGAAGTAGCT-GATATAAAATTAACTC-AACAAGTC-AT  47

seq1  GGCCTTTCTCTACACAAAGAATAAACAGGCTGAGGAAGAAATTAGGGAAA  100
      |  | |||||||||||| ||   ||||||||   |||||| | |  ||||
seq2  G--CCTTCTCTACACAAGGA--TAACAGGCT--AGAAGAATTAA--GAAA  89

seq1  CAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGCGTGACT  150
      ||||| ||||||| |||||||||||| | |||||||||||||| ||||||
seq2  CAACA-CCTTCTC-ATAGTCACAAAT-ACATAAAATACCTTGGTGTGACT  136

seq1  CTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCTAAA  200
       | |||| ||||||||||||||||||| | ||||||||||||||||| ||
seq2  -TTACTAGGGAAGTGAAAGATCTGTAT-AAAAGAACTTCAAGTCTCTGAA  184

seq1  GAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT  250
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  GAAAGAAGTTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGTTCAT  234

seq1  GGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATC  300
      ||||||| |||||||| || ||||||||| ||||| ||||||||||||||
seq2  GGATTGGGAGGATCAATATAGTAAAAATGACTATCCTGCCAAAAGCAATC  284

seq1  TACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACG-  349
      |||||||||||||||||||| |||||||| ||||||||||| ||||||| 
seq2  TACAGATTCAATGCAATCCCTATCAAAATCCCAACTCAATTTTTCAACGA  334

seq1  AATTAGAAAGGGCAATCTTCAAATTCATCTGGAATAAAAAAAAACCTAGG  399
      ||||||||||||  |||| |||||||||||||||||| ||||||||||||
seq2  AATTAGAAAGGGTGATCTGCAAATTCATCTGGAATAACAAAAAACCTAGG  384

seq1  ATAGCAAAAAACTCTTCTCAAGTATAAAAGAACCTCTGGTGGAATCACCA  449
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  ATAGC-AAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCA  433

seq1  TGCTGGACCTAAAGCTTTACTAAAGAGCAATTGTGATTAAAAACTGCATG  499
      |||||||||||||||| ||||| |||||||||||||| ||||||| ||||
seq2  TGCTGGACCTAAAGCTGTACTACAGAGCAATTGTGATAAAAAACTCCATG  483

seq1  GTATTGGTATAGTGACAGAGAAGTAGACCAATGGAATA  537
      ||| | |||||| |||||| || ||||||| |||||||
seq2  GTACTAGTATAGCGACAGACAAATAGACCAGTGGAATA  521

seq1: chr1_130774314_130775385
seq2: B6Ng01-141F14.g_69_1137

seq1  GAATTCCAGCCTTATGGGAAAACAGAAGCAGTCATTCACTCGCTCACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTTATGGGAAAACAGAAGCAGTCATTCACTCGCTCACTCA  50

seq1  TTCCTCACCAACAGGATTGTGAGGATAAAGAGACAGTTAGGTACCATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCACCAACAGGATTGTGAGGATAAAGAGACAGTTAGGTACCATTCT  100

seq1  GCACAGCAGGGTGGGAAAGAGTTGGGAGGGGCTGTTCTTAGTTCCAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCAGGGTGGGAAAGAGTTGGGAGGGGCTGTTCTTAGTTCCAGAGG  150

seq1  AAAGGTACCATTTGCAAGTGGTGCTCTGCAGGCTGGGAAACAAGGCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTACCATTTGCAAGTGGTGCTCTGCAGGCTGGGAAACAAGGCCAAA  200

seq1  GTGGGAGCTAGAGGACACTGATACCCAGCAGGGACTTGAGAGTCTGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGCTAGAGGACACTGATACCCAGCAGGGACTTGAGAGTCTGGACA  250

seq1  GTCTAGCGGTGTGGTTTGCAGTAAGCAGAGTTTACTATCAGAGACAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCGGTGTGGTTTGCAGTAAGCAGAGTTTACTATCAGAGACAATCA  300

seq1  TCTATCTGCTGGTTCTGTGACCCAGTGGGTAGGGTGCTTGCCATGAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTGCTGGTTCTGTGACCCAGTGGGTAGGGTGCTTGCCATGAATGC  350

seq1  ACAGAGCCTTGTATTTGACCCACCCAGCACTGAGTTAACTCAGCATGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCTTGTATTTGACCCACCCAGCACTGAGTTAACTCAGCATGATG  400

seq1  ACACACATCTGTATTCACAGCATTCAAGACATGGAGGATCAAAAGTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATCTGTATTCACAGCATTCAAGACATGGAGGATCAAAAGTTCAT  450

seq1  GGTCATCGATAGATTATACAGTGAATTGAGACCAGCTTGGACTATAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCGATAGATTATACAGTGAATTGAGACCAGCTTGGACTATAAGAG  500

seq1  GCTATGCCTTAAAACGAAATCGAAACAAACTAAAACAAGTATCCAGCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCCTTAAAACGAAATCGAAACAAACTAAAACAAGTATCCAGCAAC  550

seq1  ACAAAACACAACAAGCTATAGAAGGCCTTCCTTTGGAATTCCATGGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACACAACAAGCTATAGAAGGCCTTCCTTTGGAATTCCATGGACCC  600

seq1  AGTACTTCTTGGGGAATACAGGCTTGGCTGTGCTGAGCTGAGCTGAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTCTTGGGGAATACAGGCTTGGCTGTGCTGAGCTGAGCTGAGTTG  650

seq1  ATGTTCATGGGTGAAATGCAGGTCTGAAGTTATAAAATAGACACTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATGGGTGAAATGCAGGTCTGAAGTTATAAAATAGACACTTTCTT  700

seq1  TAGGGATGGTGTGGCTCATATCCTCCCCACACTGTCTGCTTCCATCCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATGGTGTGGCTCATATCCTCCCCACACTGTCTGCTTCCATCCACC  750

seq1  CACCTGCCTGGCTTACAAGCCCTGC-TCCTGTAGGCAGGAGATTGGCAGC  799
      |||||||||||||||||||| |||| || |||||||||||||||||||||
seq2  CACCTGCCTGGCTTACAAGCTCTGCTTCTTGTAGGCAGGAGATTGGCAGC  800

seq1  CAAAACTGTAGTGTCTAGAACATTGGCTTACTGTGTGGCTATGATAGCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTGTAGTGTCTAGAACATTGGCTTACTGTGTGGCTATGATAGCTG  850

seq1  TTATTGTCCTTTCTTTCTTAAGGGCTGAGAT-GGTTCTAAGGCTGTTTAG  898
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTATTGTCCTTTCTTTCTTAAGGGCTGAGATGGGTTCTAAGGCTGTTTAG  900

seq1  AAGAATAAAGGAAAATCCAGGGTCCAGTTTACT-GGCTAGATGTCATTTG  947
      |||| |||  | |||| |||||||||||||||| |||||||| | |||||
seq2  AAGATTAA--GGAAATTCAGGGTCCAGTTTACTGGGCTAGATTTTATTTG  948

seq1  GGGGCACCTTAAAACATTTTTAACAATTTCATGCACATTTATATAGAACT  997
      |||   | |||||||| ||||||| |||||||||||| ||||||||||||
seq2  GGGCATCTTTAAAACA-TTTTAACGATTTCATGCACA-TTATATAGAACT  996

seq1  TTGGTAATTTTTATCCCGTTAGTTATCC-TCTCTCTCACCTCTCTCCATC  1046
      |||||||||||||| ||||||||  ||| |||   |||||||||||||| 
seq2  TTGGTAATTTTTATTCCGTTAGTATTCCTTCTTCTTCACCTCTCTCCAT-  1045

seq1  CTTTCTCATTTGAGTCTCCCTTTCCA  1072
      ||||||||||   |||||| ||||||
seq2  CTTTCTCATT--GGTCTCCTTTTCCA  1069