BAC Information

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BAC

Clone NameB6Ng01-142B02
Chromosome1 (Build37)
Map Location 92,356,923 - 92,447,979
singlet/doubletdoublet
Overlap genenone
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7
Downstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142B02.bB6Ng01-142B02.g
ACCDH940358DH940359
length8081,222
definitionDH940358|Mus musculus domesticus DNA, BAC clone: B6Ng01-142B02, 5' end.DH940359|Mus musculus domesticus DNA, BAC clone: B6Ng01-142B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,356,923 - 92,357,724)(92,446,736 - 92,447,979)
sequence
gaattcattctcaaatttttcttccaaggattgagaaaataaaaagctgg
aaaattaatcaacaggaaaataacgacaaatgataatgttcttaaataat
cataacatgaagaaagaaagaaagaaaagaagacataaaatgaaacactg
gaagcaaacagttgtcccaagcaggaagaacacagcaggagcagctctgt
gtcctcagtgtccctgagtagtaagtaagtcacaagatcatgtcagtaga
tgtggggactcccgggcgcgttcagtactcatgcgtgatagaaaacaaca
ctgagaaaatggtgaggaaaagcaacgttctttttttactagttttttga
gagtttcatacaacatgtttaaatcatgccactccacctcgtgtcccccc
tgcacccacccccaacaacatccttaacttgttcaaagatgggtcagccg
gaaacgctgcatttgcatagcaaatacaagaagagcttacttgaacaaag
ggcagaaagtactctggattccgtgttcctgcactagaacccagagactc
tcaagcaaggagggaaagatgtctctttctaccccctccctcaaactcaa
actaaataaatcctaagaagaaagtgttttaaaacatcttttatgactac
ttcccagcaacaatcaattttttaaaaaaatcacttgtaaaatttgcagc
ccaataacacatcaaggcttacaataatctggaaataaatcttacaaaat
atgacaaggggcttttattgaagaaattctaactggatttttttctaaag
cttaaata
gaattcctagtcttaggcctgtgtccactgcctcgcagagtacctggagc
agttaataatagtgagtgatgcaggatgctaggtgatcaactggtgatgt
ctgtcactggcttgggcagaggacagcagcacaccacagctttttagact
ccctgtccatatttaagacctggctcaaatgctgtcttaaagccatcctt
ccagactcagcatctagctccatcagagctcagtagtgatgaggttgtcc
ctgctgttgtatattttaggcaactaatttattacccaattgtatattat
aattgacccctttcttttccttacttataagccccccgctggatgcacac
ccttctcttaaaccatcttcatgtagccacaatatccctttctcttacac
gcgttctcgcgaccggccaggaaagacgcaacaaaccggaatcttctgcg
gcaaaagctttattgcttacatcttcaggagccagagagcaagagcgcaa
gagctctattgcttacatctttaggagccagagcgcaagagagcaagagt
gcaagagctttattgcttacatcttcaggagcaagaagcaagagccagag
caagagctctattgcttacatctttaggagccagaagcaagagccagagc
aagagagagaatggcgaaaccccgtcccttttaaggagaattattctccg
cctaggacgtattactccctgattggctgcagcccattggccgagttgtc
gtcacggggaaggcagagcacatggggtggaaaactacccttggcacatg
cgcagattatttgtttaccacttagaacacaggatgtcagcgccatcttg
caacggcgaatgtgaggcggctcccacacctttcccctctcattgtctga
gtctcccattctggctttcttctggttactcgagctctgctcagcaggca
ctgggggctggagctgaaacaaagctgaagaccggcttagctgcattggg
cacctgctcacatgccgaaagctcaactctgctgatgggctcctttggat
ttgttacatgatgctctagcttgccgtcttgaactggggaaagatatggg
ccaatggagtctgacaggacgattacgaatcagctggcacactgaacaag
ctctgtgcatggtcacggaatagtaaagaataccgaagcatgagcctaaa
tcgaaacaaagagatgaacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92356923_92357724
seq2: B6Ng01-142B02.b_43_850

seq1  GAATTCATTCTCAAATTTTTCTTCCAAGGATTGAGAAAATAAAAAGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCAAATTTTTCTTCCAAGGATTGAGAAAATAAAAAGCTGG  50

seq1  AAAATTAATCAACAGGAAAATAACGACAAATGATAATGTTCTTAAATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATCAACAGGAAAATAACGACAAATGATAATGTTCTTAAATAAT  100

seq1  CATAACATGAAGAAAGAAAGAAAGAAAAGAAGACATAAAATGAAACACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATGAAGAAAGAAAGAAAGAAAAGAAGACATAAAATGAAACACTG  150

seq1  GAAGCAAACAGTTGTCCCAAGCAGGAAGAACACAGCAGGAGCAGCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAACAGTTGTCCCAAGCAGGAAGAACACAGCAGGAGCAGCTCTGT  200

seq1  GTCCTCAGTGTCCCTGAGTAGTAAGTAAGTCACAAGATCATGTCAGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGTGTCCCTGAGTAGTAAGTAAGTCACAAGATCATGTCAGTAGA  250

seq1  TGTGGGGACTCCCGGGCGCGTTCAGTACTCATGCGTGATAGAAAACAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGACTCCCGGGCGCGTTCAGTACTCATGCGTGATAGAAAACAACA  300

seq1  CTGAGAAAATGGTGAGGAAAAGCAACGTTCTTTTTTTACTAGTTTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAATGGTGAGGAAAAGCAACGTTCTTTTTTTACTAGTTTTTTGA  350

seq1  GAGTTTCATACAACATGTTTAAATCATGCCACTCCACCTCGTGTCCCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCATACAACATGTTTAAATCATGCCACTCCACCTCGTGTCCCCCC  400

seq1  TGCACCCACCCCCAACAACATCCTTAACTTGTTCAAAGATGGGTCAGCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCACCCCCAACAACATCCTTAACTTGTTCAAAGATGGGTCAGCCG  450

seq1  GAAACGCTGCATTTGCATAGCAAATACAAGAAGAGCTTACTTGAACAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGCTGCATTTGCATAGCAAATACAAGAAGAGCTTACTTGAACAAAG  500

seq1  GGCAGAAAGTACTCTGGATTCCGTGTTCCTGCACTAGAACCCAGAGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAAGTACTCTGGATTCCGTGTTCCTGCACTAGAACCCAGAGACTC  550

seq1  TCAAGCAAGGAGGGAAAGATGTCTCTTTCTACCCCCTCCCTCAAACTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAAGGAGGGAAAGATGTCTCTTTCTACCCCCTCCCTCAAACTCAA  600

seq1  ACTAAATAAATCCTAAGAAGAAAGTGTTTTAAAACATC-TTTATGACTAC  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTAAATAAATCCTAAGAAGAAAGTGTTTTAAAACATCTTTTATGACTAC  650

seq1  TTCCCAGCAACAATCAA-TTTTTAAAAAAATCACTTGTAAAA-TTGCAG-  696
      ||||||||||||||||| |||||||||||||||||||||||| |||||| 
seq2  TTCCCAGCAACAATCAATTTTTTAAAAAAATCACTTGTAAAATTTGCAGC  700

seq1  CCAATAACACATCAAGGCTTACAATAATCTGGAAATAAATCTTACAAAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAACACATCAAGGCTTACAATAATCTGGAAATAAATCTTACAAAAT  750

seq1  ATGACAA-GGGCTTTTATTG-AGAAATTCTAACTGGATTTTTTTCTAAAA  794
      ||||||| |||||||||||| |||||||||||||||||||||||||||| 
seq2  ATGACAAGGGGCTTTTATTGAAGAAATTCTAACTGGATTTTTTTCTAAAG  800

seq1  GCTAAATA  802
        ||||||
seq2  CTTAAATA  808

seq1: chr1_92446736_92447979
seq2: B6Ng01-142B02.g_69_1290 (reverse)

seq1  TGTGTTCATCT-TTTGTTCTGAATTTAGCTCATTGGTTTCTGGTATCCCC  49
      ||||||||||| ||||||  || ||  ||||||  | ||| |||||  | 
seq2  TGTGTTCATCTCTTTGTTTCGATTTAGGCTCAT--GCTTC-GGTAT-TCT  46

seq1  TTACTAATCTGCTGACCACTGCAGACAGACCTTGTTCAGTTGCCCAAGGC  99
      |||||| || | |||||| |||  ||||| ||||||||||   |||  ||
seq2  TTACTATTCCG-TGACCA-TGC--ACAGAGCTTGTTCAGTGTGCCA--GC  90

seq1  TGATTCGT-ATCGGTCCGTCAGACTCCATTTGGGCCACATCCTTCCCCCC  148
      |||||||| ||||  | ||||||||||| |||| ||| ||| ||  ||||
seq2  TGATTCGTAATCGTCCTGTCAGACTCCA-TTGGCCCATATCTTT--CCCC  137

seq1  AGTTCAGAACCGGCCAAGCCTAAGGAGCATCATGTAACAAATCCAAAGGA  198
      ||||||  ||  | |||| |||  ||||||||||||||||||||||||||
seq2  AGTTCAAGAC--GGCAAG-CTA--GAGCATCATGTAACAAATCCAAAGGA  182

seq1  AGGCCCATCAGCAGAGTTGAGCTTTCGCCATGTGGAGCCAGGTGCCCAAT  248
        ||||||||||||||||||||||||| ||||| ||| ||||||||||||
seq2  --GCCCATCAGCAGAGTTGAGCTTTCGGCATGT-GAG-CAGGTGCCCAAT  228

seq1  GCAGCTAAGCCGGTCCTCAGCTGTGTCTCAGCTCCAGCCCCCAGTGCCTG  298
      ||||||||||||||| |||||| ||| |||||||||||||||||||||||
seq2  GCAGCTAAGCCGGTCTTCAGCTTTGTTTCAGCTCCAGCCCCCAGTGCCTG  278

seq1  CTGAGCAAGAGCTCGAGTAACCAGAAGAAAGCCAGAATGGGAGACTCAGA  348
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGC-AGAGCTCGAGTAACCAGAAGAAAGCCAGAATGGGAGACTCAGA  327

seq1  C-ATGAGAGGGGAAAGGTGTGGGGAGCCGCCCTCACATTCGCCGTTGCAA  397
      | |||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  CAATGAGAGGGGAAAGGTGT-GGGAGCCG-CCTCACATTCGCCGTTGCAA  375

seq1  GATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCAT  425

seq1  GTGCCAAGGGTAGTTTTCCACCCCATGTGCTCTGCCTTCCCCGTGACGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAGGGTAGTTTTCCACCCCATGTGCTCTGCCTTCCCCGTGACGAC  475

seq1  AACTCGGCCAATGGGCTGCAGCCAATCAGGGAGTAATACGTCCTAGGCGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGGCCAATGGGCTGCAGCCAATCAGGGAGTAATACGTCCTAGGCGG  525

seq1  AGAATAATTCTCCTTAAAAGGGACGGGGTTTCGCCATTCTCTCTCTTGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATTCTCCTTAAAAGGGACGGGGTTTCGCCATTCTCTCTCTTGCT  575

seq1  CTGGCTCTTGCTTCTGGCTCCTAAAGATGTAAGCAATAGAGCTCTTGCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTTGCTTCTGGCTCCTAAAGATGTAAGCAATAGAGCTCTTGCTC  625

seq1  TGGCTCTTGCTTCTTGCTCCTGAAGATGTAAGCAATAAAGCTCTTGCACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTGCTTCTTGCTCCTGAAGATGTAAGCAATAAAGCTCTTGCACT  675

seq1  CTTGCTCTCTTGCGCTCTGGCTCCTAAAGATGTAAGCAATAGAGCTCTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCTCTTGCGCTCTGGCTCCTAAAGATGTAAGCAATAGAGCTCTTG  725

seq1  CGCTCTTGCTCTCTGGCTCCTGAAGATGTAAGCAATAAAGCTTTTGCCGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTTGCTCTCTGGCTCCTGAAGATGTAAGCAATAAAGCTTTTGCCGC  775

seq1  AGAAGATTCCGGTTTGTTGCGTCTTTCCTGGCCGGTCGCGAGAACGCGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTCCGGTTTGTTGCGTCTTTCCTGGCCGGTCGCGAGAACGCGTG  825

seq1  TAAGAGAAAGGGATATTGTGGCTACATGAAGATGGTTTAAGAGAAGGGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAAAGGGATATTGTGGCTACATGAAGATGGTTTAAGAGAAGGGTG  875

seq1  TGCATCCAGCGGGGGGCTTATAAGTAAGGAAAAGAAAGGGGTCAATTATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCAGCGGGGGGCTTATAAGTAAGGAAAAGAAAGGGGTCAATTATA  925

seq1  ATATACAATTGGGTAATAAATTAGTTGCCTAAAATATACAACAGCAGGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAATTGGGTAATAAATTAGTTGCCTAAAATATACAACAGCAGGGA  975

seq1  CAACCTCATCACTACTGAGCTCTGATGGAGCTAGATGCTGAGTCTGGAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCATCACTACTGAGCTCTGATGGAGCTAGATGCTGAGTCTGGAAG  1025

seq1  GATGGCTTTAAGACAGCATTTGAGCCAGGTCTTAAATATGGACAGGGAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTTAAGACAGCATTTGAGCCAGGTCTTAAATATGGACAGGGAGT  1075

seq1  CTAAAAAGCTGTGGTGTGCTGCTGTCCTCTGCCCAAGCCAGTGACAGACA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAGCTGTGGTGTGCTGCTGTCCTCTGCCCAAGCCAGTGACAGACA  1125

seq1  TCACCAGTTGATCACCTAGCATCCTGCATCACTCACTATTATTAACTGCT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGTTGATCACCTAGCATCCTGCATCACTCACTATTATTAACTGCT  1175

seq1  CCAGGTACTCTGCGAGGCAGTGGACACAGGCCTAAGACTAGGAATTC  1244
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACTCTGCGAGGCAGTGGACACAGGCCTAAGACTAGGAATTC  1222