BAC Information

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BAC

Clone NameB6Ng01-142C17
Chromosome1 (Build37)
Map Location 150,586,114 - 150,739,716
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647, LOC100042813, Pla2g4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142C17.bB6Ng01-142C17.g
ACCDH940434DH940435
length1,0571,108
definitionDH940434|Mus musculus domesticus DNA, BAC clone: B6Ng01-142C17, 5' end.DH940435|Mus musculus domesticus DNA, BAC clone: B6Ng01-142C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,738,658 - 150,739,716)(150,586,114 - 150,587,246)
sequence
gaattcttgagagattctactttactttagattaatcaccagtttagatt
agtcatcataaatttccttcatttatgatacttataaaaatcagtttctt
tcagattctaatcagcatatctagtcagcacaagaattcatggtcttgtg
tatcttcaatgctacatgaaaaactctgtctggatactagtcattacaat
ctctacctcacagttatagatatatagaaaattagaaaaagcttataaat
gtaagaaaatcttttattttgtttttaaggttgtttctctttggtagaag
aaacatgatgatgtttttttctgtatttataaatttagcaaattgatatg
tctaaagttatgcctgagaattataaactttagctttgaggtagttatct
caaacagttatatttttgaaattatttttgcaatgtagtgaaatttgtct
gggactacaaccacacagaataggacaacaatggggctcaatgatattgt
agactccaaggaactcaagccatcctaatcttcccttacatcatctttcc
atttcatagaatccataaaattatattattcatcaacaatgctttgaagt
ctctttaattttgtaagaagaaaagttgaaattatgaaatttaaagtgta
ctttgtttatttagtttttttcctttgatgatctttaaatattacctgga
tggtgggagcacaggcttttaatcccaacattggggagccagatccaggc
aagactatgagtttgaaatcagcctggtctacagagttagtttcaggaca
cccaggagtacacgggagaaaaatctgttttgaggaggattaaaacgaaa
ttaaaatgtaatattaattatttagagattctttaaattgatttaaaaag
tttataatattttcattatgcttgatctgatagtttaaattatggatgta
tgattttatgtatctttcactttcctgtggaataaaattagaaatcaaat
tatttaatattattttttggattttcctcttacttgtttttacagtcttc
aatgagt
gaattcattcacgctataaaacttaaagaattgactcttttgcccttcac
acttagaaactctctcttattagaaggaaagtataaatggatcactttgt
acttgtttcacacttttaagcaatagtgtgaaagtaagagttggtagctg
cccaggaagtatactttctataaaatttagtgttcaaaaaatttggattt
ttcaattagcttatattccctagaaaccagaaactaatatttatctgtaa
ccaaggaaatacaaaaatatatgagactgttgttcatggatgcatggtat
ttaaaagtcaaaacatttttagtttgcatattgactataaatagttgcta
tttgtccagtttataccttagcaatcatggtgaaaataaacaaaacatat
tatttttaaattttacaataacttaaaaattgtagttgctttgttctaaa
tgattctccttatgattctcagtattcagtcagaattaattcacggaaga
acaaataactcttcccacaaagcagtattaagagaacttctggctgcacg
gaggggtaagggagcaatgtgatcacacccattaacaatatatatgtatc
ttacaaaataatgtcagaagatgaagatattcactgttaaacaaagatta
ggcatgatatttatgtttttgacacagaactcatttttaaatagaaaaat
tactcatgaaattgaaagtcaaggccaatgggatagctccatggtaaatg
ttctggttgccaagactggcctcatgacttcaatcctgggacacatgtta
aagaaacaacaacaacaaacattggcaagttgtctaatgtacacattaga
atcttcatgtagctaccttgcacataacaacaggagagtgaagagagaga
gtaaagaatgaaggagagacaaatacaggatttattattttcttttaaat
gatattagttttgtgtggcactcagctgaataatctccacatttataaga
taagaagaagattaccagaattaaagtacatcttgacaactatagagttc
attcagcaaggcttaggataaactcttgtctcaatacagaaatgagtcga
tgacagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_150738658_150739716
seq2: B6Ng01-142C17.b_45_1101 (reverse)

seq1  ACTCATTGAAGACTGTAAAAACAAGTAAGAGATAAATCAAATAAATAATA  50
      |||||||||||||||||||||||||||||||  ||||| || ||||||||
seq2  ACTCATTGAAGACTGTAAAAACAAGTAAGAGGAAAATCCAAAAAATAATA  50

seq1  -TAAATAATGTGATTTTCTATTTTTATTTCACAGGAAAAGTGAAAGAATA  99
       |||||||| ||| |||||| ||||||| |||||| |||||||||| |||
seq2  TTAAATAATTTGA-TTTCTAATTTTATTCCACAGG-AAAGTGAAAG-ATA  97

seq1  CATAAAATCATACATCCATAATTTTAAACTATCAGATCAAGCATAATGAA  149
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATAAAATCATACATCCATAA-TTTAAACTATCAGATCAAGCATAATGAA  146

seq1  AATATTATAAACTTTTTAAATCAATTTAAAGAATCTCTAAATAATTAATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATAAACTTTTTAAATCAATTTAAAGAATCTCTAAATAATTAATA  196

seq1  TTACATTTTAATTTCGTTTTAATCCTCCTCAAAACAGATTTTTCT-CCGT  248
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTACATTTTAATTTCGTTTTAATCCTCCTCAAAACAGATTTTTCTCCCGT  246

seq1  GTACTCCTGGGTGTCCTGAAACTAACTCTGTAGACCAGGCTGATTTCAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCCTGGGTGTCCTGAAACTAACTCTGTAGACCAGGCTGATTTCAAA  296

seq1  CTCATAGTCTTGCCTGGATCTGGCTCCCCAATGTTGGGATTAAAAGCCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGTCTTGCCTGGATCTGGCTCCCCAATGTTGGGATTAAAAGCCTG  346

seq1  TGCTCCCACCATCCAGGTAATATTTAAAGATCATCAAAGGAAAAAAACTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCACCATCCAGGTAATATTTAAAGATCATCAAAGGAAAAAAACTA  396

seq1  AATAAACAAAGTACACTTTAAATTTCATAATTTCAACTTTTCTTCTTACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAAGTACACTTTAAATTTCATAATTTCAACTTTTCTTCTTACA  446

seq1  AAATTAAAGAGACTTCAAAGCATTGTTGATGAATAATATAATTTTATGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAGAGACTTCAAAGCATTGTTGATGAATAATATAATTTTATGGA  496

seq1  TTCTATGAAATGGAAAGATGATGTAAGGGAAGATTAGGATGGCTTGAGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGAAATGGAAAGATGATGTAAGGGAAGATTAGGATGGCTTGAGTT  546

seq1  CCTTGGAGTCTACAATATCATTGAGCCCCATTGTTGTCCTATTCTGTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAGTCTACAATATCATTGAGCCCCATTGTTGTCCTATTCTGTGTG  596

seq1  GTTGTAGTCCCAGACAAATTTCACTACATTGCAAAAATAATTTCAAAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGTCCCAGACAAATTTCACTACATTGCAAAAATAATTTCAAAAAT  646

seq1  ATAACTGTTTGAGATAACTACCTCAAAGCTAAAGTTTATAATTCTCAGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGTTTGAGATAACTACCTCAAAGCTAAAGTTTATAATTCTCAGGC  696

seq1  ATAACTTTAGACATATCAATTTGCTAAATTTATAAATACAGAAAAAAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTAGACATATCAATTTGCTAAATTTATAAATACAGAAAAAAACA  746

seq1  TCATCATGTTTCTTCTACCAAAGAGAAACAACCTTAAAAACAAAATAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATGTTTCTTCTACCAAAGAGAAACAACCTTAAAAACAAAATAAAA  796

seq1  GATTTTCTTACATTTATAAGCTTTTTCTAATTTTCTATATATCTATAACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTTACATTTATAAGCTTTTTCTAATTTTCTATATATCTATAACT  846

seq1  GTGAGGTAGAGATTGTAATGACTAGTATCCAGACAGAGTTTTTCATGTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTAGAGATTGTAATGACTAGTATCCAGACAGAGTTTTTCATGTAG  896

seq1  CATTGAAGATACACAAGACCATGAATTCTTGTGCTGACTAGATATGCTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGATACACAAGACCATGAATTCTTGTGCTGACTAGATATGCTGA  946

seq1  TTAGAATCTGAAAGAAACTGATTTTTATAAGTATCATAAATGAAGGAAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATCTGAAAGAAACTGATTTTTATAAGTATCATAAATGAAGGAAAT  996

seq1  TTATGATGACTAATCTAAACTGGTGATTAATCTAAAGTAAAGTAGAATCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATGACTAATCTAAACTGGTGATTAATCTAAAGTAAAGTAGAATCT  1046

seq1  CTCAAGAATTC  1059
      |||||||||||
seq2  CTCAAGAATTC  1057

seq1: chr1_150586114_150587246
seq2: B6Ng01-142C17.g_67_1174

seq1  GAATTCATTCACGCTATAAAACTTAAAGAATTGACTCTTTTGCCCTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACGCTATAAAACTTAAAGAATTGACTCTTTTGCCCTTCAC  50

seq1  ACTTAGAAACTCTCTCTTATTAGAAGGAAAGTATAAATGGATCACTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAAACTCTCTCTTATTAGAAGGAAAGTATAAATGGATCACTTTGT  100

seq1  ACTTGTTTCACACTTTTAAGCAATAGTGTGAAAGTAAGAGTTGGTAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTCACACTTTTAAGCAATAGTGTGAAAGTAAGAGTTGGTAGCTG  150

seq1  CCCAGGAAGTATACTTTCTATAAAATTTAGTGTTCAAAAAATTTGGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAAGTATACTTTCTATAAAATTTAGTGTTCAAAAAATTTGGATTT  200

seq1  TTCAATTAGCTTATATTCCCTAGAAACCAGAAACTAATATTTATCTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAGCTTATATTCCCTAGAAACCAGAAACTAATATTTATCTGTAA  250

seq1  CCAAGGAAATACAAAAATATATGAGACTGTTGTTCATGGATGCATGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAAATACAAAAATATATGAGACTGTTGTTCATGGATGCATGGTAT  300

seq1  TTAAAAGTCAAAACATTTTTAGTTTGCATATTGACTATAAATAGTTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTCAAAACATTTTTAGTTTGCATATTGACTATAAATAGTTGCTA  350

seq1  TTTGTCCAGTTTATACCTTAGCAATCATGGTGAAAATAAACAAAACATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCAGTTTATACCTTAGCAATCATGGTGAAAATAAACAAAACATAT  400

seq1  TATTTTTAAATTTTACAATAACTTAAAAATTGTAGTTGCTTTGTTCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAATTTTACAATAACTTAAAAATTGTAGTTGCTTTGTTCTAAA  450

seq1  TGATTCTCCTTATGATTCTCAGTATTCAGTCAGAATTAATTCACGGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTCCTTATGATTCTCAGTATTCAGTCAGAATTAATTCACGGAAGA  500

seq1  ACAAATAACTCTTCCCACAAAGCAGTATTAAGAGAACTTCTGGCTGCACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAACTCTTCCCACAAAGCAGTATTAAGAGAACTTCTGGCTGCACG  550

seq1  GAGGGGTAAGGGAGCAATGTGATCACACCCATTAACAATATATATGTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTAAGGGAGCAATGTGATCACACCCATTAACAATATATATGTATC  600

seq1  TTACAAAATAATGTCAGAAGATGAAGATATTCACTGTTAAACAAAGATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAATAATGTCAGAAGATGAAGATATTCACTGTTAAACAAAGATTA  650

seq1  GGCATGATATTTATGTTTTTGACACAGAACTCATTTTTAAATAGAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGATATTTATGTTTTTGACACAGAACTCATTTTTAAATAGAAAAAT  700

seq1  TACTCATGAAATTGAAAGTCAAGGCCAATGGGATAGCTCCATGGTAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATGAAATTGAAAGTCAAGGCCAATGGGATAGCTCCATGGTAAATG  750

seq1  TTCTGGTTGCCAAGACTGGCCTCATGACTTCAATCCTGGGACACATGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTGCCAAGACTGGCCTCATGACTTCAATCCTGGGACACATGTTA  800

seq1  AAGAAACAACAACAACAAACATTGGCAAGTTGTCTAATGTACACATTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAACAACAACAAACATTGGCAAGTTGTCTAATGTACACATTAGA  850

seq1  ATCTTCATGTAGCTACCTTGCACATAACAACAGGGAGAGGTGGAAGAGAG  900
      |||||||||||||||||||||||||||||||| ||||||   ||||||||
seq2  ATCTTCATGTAGCTACCTTGCACATAACAACA-GGAGAG--TGAAGAGAG  897

seq1  AGAGTAAAAGAATGAAGGAGAGAACAAAATACAGGATTTAATTATTTTCT  950
      ||||| |||||||||||||||||   ||||||||||||| ||||||||||
seq2  AGAGT-AAAGAATGAAGGAGAGA--CAAATACAGGATTT-ATTATTTTCT  943

seq1  TTTAAAATGATATTAAGTTTTGTGTGGCAACTCAGGCTGAATAATCTCCA  1000
      ||| |||||||||| ||||||||||||| ||||| |||||||||||||||
seq2  TTT-AAATGATATT-AGTTTTGTGTGGC-ACTCA-GCTGAATAATCTCCA  989

seq1  CATTTATAAGGATAAGGAAAGAAGATTACCAGGAATTAGAGTACATCCTG  1050
      ||||||||| ||||||  ||||||||||||| |||||| |||||||| ||
seq2  CATTTATAA-GATAAG--AAGAAGATTACCA-GAATTAAAGTACATCTTG  1035

seq1  ACCAACATAAGGAGTTCATTCCAGCAAGGGCTATAGGATAAAACTC-TGT  1099
      || |  |||  ||||||||| |||||| |||| |||||| |||||| |||
seq2  ACAACTATA--GAGTTCATT-CAGCAA-GGCT-TAGGAT-AAACTCTTGT  1079

seq1  CTCAATACACAGAAAATGAGTCAGATAGACAGAC  1133
      |||||||||    ||||||||| ||| |||||||
seq2  CTCAATACA---GAAATGAGTC-GAT-GACAGAC  1108