BAC Information

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BAC

Clone NameB6Ng01-142H02
Chromosome1 (Build37)
Map Location 95,698,505 - 95,875,762
singlet/doubletdoublet
Overlap geneIng5, D2hgdh, Gal3st2, LOC100041596, EG666009
Upstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk
Downstream geneEG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142H02.bB6Ng01-142H02.g
ACCDH940640DH940641
length1,2061,079
definitionDH940640|Mus musculus domesticus DNA, BAC clone: B6Ng01-142H02, 5' end.DH940641|Mus musculus domesticus DNA, BAC clone: B6Ng01-142H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,698,505 - 95,699,718)(95,874,654 - 95,875,762)
sequence
gaattctgtggcctgcggggaacagcttccggacgtgacgtaatctaggc
ccgggagtctgcagtttagcgagcgccaactcgcggaacttccgttcgcc
gctcccgaagagcaccaatcttaaggactgtggttgcgcaggctctggtc
acgtggaagttcgagacctgtaacggaatcaaatttttatgcccctaagc
gcgctactgaagggttctaaaagtttcttatcacacacacacctgcgcgc
gtacaggagccatgtgatgatcaggctctgaaaggagttaaggataggaa
catcgacccccaagatgtactttctgcagcattttcgaaccgctcaggaa
ttttccttgtcgttttagtgtaagttggtggaaggaaatgggtttatttg
cagcgtgggcagaattgaaaccaccccccccccttttaaattcctttccc
cctagcagtgtttttacagacaaaataaagtcagggaaaatacatgagca
ggaggcgggcaaatctctgtgagtctgaggccacttacatagtttcaggc
cagccagggatacattgtgagacccaggctcaaaaacccaaacaacagta
ctctagaggaagagaaaaaaggatccgcagtcaaaggctgggctgggtta
tgttttgcctaatgaacaaagattccatacccagcacagaataaattgga
tatagtgagtgacatagcctataaacccaacatttgggaggtagatcaag
gtttatgcaaacatttgaactaacacccaaagaagtgacacagatgccag
acacatatgtaaaaatgtgcaacacaaacatattgttaggaatcatgaat
ttaagataatttcacctcttcgagaatagcccaaatctacaattctaacc
cttcatcatgctggtggaggacgtgagcgaaaggagactgtcagttgcag
aggagaatgcaaaaacggtgtgagatagcttggctgtttctcaagaagca
ctcttacttttacatgaagtcatatttaccaaatgggttggaaactatgt
ctgcaccacaaatgattgtatcagcctctagccacatttggcttaatatg
gaagcagctagatgttcctccaacaccgcaactgtataactgtatacaca
gtgaaatatttggaagttaacgtgaatatcggtacttatcagtactggag
gaacct
gaattcctgcataaaggaaatgaagataggtggtttcctgggcctcactt
accttttagcttagtctaatcaaagattaccaggacaataaaaagccctc
tctcaaacaaagggggacaatgcccaaggttgatctctgatttttacaag
catgcatataaatgtgtacctacacctccacaataattaaaataaataaa
tacaataaagggacacaataggaatcattaactgtgaagagaccatcaaa
cctacagccctagtcctgtggtgtctatgtgggtgtttccagaattattt
aactaaagtagaaaaacttaccttaaaagtagacatcaacaggccccagc
ttgactaaaatggcctgagccataactgatctctttctgcctcctgacac
aggtaaccagctccctccctctgttgcaaacatactgtcccagccttgga
gtgagtcaaagcaaacctttcttccttctagctacttctgccagcatttt
atcacatcagtaagagacggggctcagggaaggggattcaagggtcctgg
aggtgagctggcgggtgcaactccacaccaagttggccttagctaacctt
cctcattttccaatttctgaaagtcaggtacaaggagagcatcactgcct
gagaaaagtgccccctggtggctcctctgtgaactccacgtgtccctgaa
gctcttagagccagaaccattacaataggttcagcagcctcagactgaag
ctagaacacccccggggcaggctttgcacccctttggaatctggctcacc
acttccaggcccagtacagtccctcgaaaggagccatatctctgaatcgc
agccaccagcatttgttgcacatttcccacgatgtggcagctgccctttg
ctcccagtccagtgcatgatgaagtccagctcctgcaagtactgctcagc
tctcagcacacatgctgctggcaaacagattcctacaaggcgactgatta
catcactctgtaactctacggtatgaactcctgctgagactccttgtagg
tagactccagaaggatgcttccacggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_95698505_95699718
seq2: B6Ng01-142H02.b_42_1247

seq1  GAATTCTGTGGCCTGCGGGGAACAGCTTCCGGACGTGACGTAATCTAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGCCTGCGGGGAACAGCTTCCGGACGTGACGTAATCTAGGC  50

seq1  CCGGGAGTCTGCAGTTTAGCGAGCGCCAACTCGCGGAACTTCCGTTCGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAGTCTGCAGTTTAGCGAGCGCCAACTCGCGGAACTTCCGTTCGCC  100

seq1  GCTCCCGAAGAGCACCAATCTTAAGGACTGTGGTTGCGCAGGCTCTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCGAAGAGCACCAATCTTAAGGACTGTGGTTGCGCAGGCTCTGGTC  150

seq1  ACGTGGAAGTTCGAGACCTGTAACGGAATCAAATTTTTATGCCCCTAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGAAGTTCGAGACCTGTAACGGAATCAAATTTTTATGCCCCTAAGC  200

seq1  GCGCTACTGAAGGGTTCTAAAAGTTTCTTATCACACACACACCTGCGCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTACTGAAGGGTTCTAAAAGTTTCTTATCACACACACACCTGCGCGC  250

seq1  GTACAGGAGCCATGTGATGATCAGGCTCTGAAAGGAGTTAAGGATAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGAGCCATGTGATGATCAGGCTCTGAAAGGAGTTAAGGATAGGAA  300

seq1  CATCGACCCCCAAGATGTACTTTCTGCAGCATTTTCGAACCGCTCAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGACCCCCAAGATGTACTTTCTGCAGCATTTTCGAACCGCTCAGGAA  350

seq1  TTTTCCTTGTCGTTTTAGTGTAAGTTGGTGGAAGGAAATGGGTTTATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGTCGTTTTAGTGTAAGTTGGTGGAAGGAAATGGGTTTATTTG  400

seq1  CAGCGTGGGCAGAATTGAAACCACCCCCCCCCCTTTTAAATTCCTTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTGGGCAGAATTGAAACCACCCCCCCCCCTTTTAAATTCCTTTCCC  450

seq1  CCTAGCAGTGTTTTTACAGACAAAATAAAGTCAGGGAAAATACATGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCAGTGTTTTTACAGACAAAATAAAGTCAGGGAAAATACATGAGCA  500

seq1  GGAGGCGGGCAAATCTCTGTGAGTCTGAGGCCACTTACATAGTTTCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCGGGCAAATCTCTGTGAGTCTGAGGCCACTTACATAGTTTCAGGC  550

seq1  CAGCCAGGGATACATTGTGAGACCCAGGCTCAAAAACCCAAACAACAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGATACATTGTGAGACCCAGGCTCAAAAACCCAAACAACAGTA  600

seq1  CTCTAGAGGAAGAGAAAAAAGGATCCGCAGTCAAAGGCTGGGCTGGGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGGAAGAGAAAAAAGGATCCGCAGTCAAAGGCTGGGCTGGGTTA  650

seq1  TGTTTTGCCTAATGAACAAAGATTCCATACCCAGCACAGAATAAATTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCCTAATGAACAAAGATTCCATACCCAGCACAGAATAAATTGGA  700

seq1  TATAGTGAGTGACATAGCCTATAAACCCAACATTTGGGAGGTAGATCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGAGTGACATAGCCTATAAACCCAACATTTGGGAGGTAGATCAAG  750

seq1  GTTTATGCAAACATTTGAACTAACACCCAAAGAAGTGACACAGATGCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGCAAACATTTGAACTAACACCCAAAGAAGTGACACAGATGCCAG  800

seq1  ACACATATGTAAAAATGTGCAACACAAACATATTGTTAGGAATCATGAA-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACACATATGTAAAAATGTGCAACACAAACATATTGTTAGGAATCATGAAT  850

seq1  TTAAGATAATTTCACCTCTTCGAGAATAGCCCAAATCTACAATTCTAACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATAATTTCACCTCTTCGAGAATAGCCCAAATCTACAATTCTAACC  900

seq1  CTTCATCATGCTGGT-GAGGACGTGGAGCG-AAGGAGACTGTCAG-TGCA  946
      ||||||||||||||| |||||||| ||||| |||||||||||||| ||||
seq2  CTTCATCATGCTGGTGGAGGACGT-GAGCGAAAGGAGACTGTCAGTTGCA  949

seq1  GAGGAGAAGGCAAAAACGGTGTGGAAGATAGCTTGGCTGTTTCTCAAGAA  996
      |||||||| ||||||||||||||  ||||||||||||||||||||||| |
seq2  GAGGAGAATGCAAAAACGGTGTG--AGATAGCTTGGCTGTTTCTCAAG-A  996

seq1  AGCACTC-TACTTTTAACATGAAGTCAATATTTACCCAAATGGGTTGGAA  1045
      ||||||| ||||||| |||||||||| ||||||| |||||||||||||||
seq2  AGCACTCTTACTTTT-ACATGAAGTC-ATATTTA-CCAAATGGGTTGGAA  1043

seq1  ACTATGTCTGCA-CACAAATGATTGTATCAG-CTCTAGCCACATTTGCCT  1093
      |||||||||||| |||||||||||||||||| ||||||||||||||| ||
seq2  ACTATGTCTGCACCACAAATGATTGTATCAGCCTCTAGCCACATTTGGCT  1093

seq1  AAATATGGAAGCAGCTAAGATG-TCCTCCAACACGCAAACTGATAAACTG  1142
       ||||||||||||||| ||||| |||||||||||   |||||   |||| 
seq2  TAATATGGAAGCAGCT-AGATGTTCCTCCAACACCGCAACTGTATAACT-  1141

seq1  GTAATTACACAGTGAAATAATTTTGAAGTAAAAAGTGAATTATCAGTTAC  1192
      |||  ||||||||||||| |||| |||||  || ||||| |||| | |||
seq2  GTA--TACACAGTGAAAT-ATTTGGAAGT-TAACGTGAA-TATC-GGTAC  1185

seq1  TTACTAGGACATGGAGGAACCT  1214
      |||  || || |||||||||||
seq2  TTATCAGTAC-TGGAGGAACCT  1206

seq1: chr1_95874654_95875762
seq2: B6Ng01-142H02.g_65_1143 (reverse)

seq1  GCTCCGTGGAGAACATTCCTTCTGGGAGGTTCTTACCTACAAGGGAGTTC  50
      |||||||||| | || ||||||| ||||  || ||||||||| |||| ||
seq2  GCTCCGTGGA-AGCA-TCCTTCT-GGAG--TC-TACCTACAA-GGAG-TC  42

seq1  TCAGCAGTGAGTTTTCATACCCCTAGAGTTTCCAGAGGTTGTTGGTAACT  100
      ||||||| |||  |||||| || ||||| || |||||  || | |||| |
seq2  TCAGCAG-GAG--TTCATA-CCGTAGAG-TTACAGAG--TGAT-GTAA-T  83

seq1  CAGTCGCCCTTTGTAGGAATCCTGGTTTGCCAGGCAGGCTGTGTGCTGGA  150
      ||||||||  |||||||||||   |||||||| ||||  |||||||||  
seq2  CAGTCGCC--TTGTAGGAATC--TGTTTGCCA-GCAGCATGTGTGCTG--  126

seq1  GGAGCTGAGCAGGTACGTGCAGGAGCGGGACTTCATCATGCCACTGGACT  200
       |||||||||| |||| ||||||||| ||||||||||||| |||||||| 
seq2  AGAGCTGAGCA-GTACTTGCAGGAGCTGGACTTCATCATG-CACTGGAC-  173

seq1  TGGGAGCAAAGGGCAGCTGCCACATCGGGGGAAATGTGGCAACAAATGCT  250
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  TGGGAGCAAAGGGCAGCTGCCACATCGTGGGAAATGT-GCAACAAATGCT  222

seq1  GGTGGCCTGCGATTCCTGAGATATGGCTCCCTTCGAGGGACTGTCCTGGG  300
      ||||| |||||||| | ||||||||||||| ||||||||||||| |||||
seq2  GGTGG-CTGCGATT-CAGAGATATGGCTCCTTTCGAGGGACTGTACTGGG  270

seq1  CCTGGAAGTGGTGAGCCAGATTCCAAAGGGGTGCAAAGCCTGCCCCGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGTGGTGAGCCAGATTCCAAAGGGGTGCAAAGCCTGCCCCGGGG  320

seq1  GTGTTCTAGCTTCAGTCTGAGGCTGCTGAACCTATTGTAATGGTTCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTAGCTTCAGTCTGAGGCTGCTGAACCTATTGTAATGGTTCTGGC  370

seq1  TCTAAGAGCTTCAGGGACACGTGGAGTTCACAGAGGAGCCACCAGGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAGCTTCAGGGACACGTGGAGTTCACAGAGGAGCCACCAGGGGGC  420

seq1  ACTTTTCTCAGGCAGTGATGCTCTCCTTGTACCTGACTTTCAGAAATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTCAGGCAGTGATGCTCTCCTTGTACCTGACTTTCAGAAATTGG  470

seq1  AAAATGAGGAAGGTTAGCTAAGGCCAACTTGGTGTGGAGTTGCACCCGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGGAAGGTTAGCTAAGGCCAACTTGGTGTGGAGTTGCACCCGCC  520

seq1  AGCTCACCTCCAGGACCCTTGAATCCCCTTCCCTGAGCCCCGTCTCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACCTCCAGGACCCTTGAATCCCCTTCCCTGAGCCCCGTCTCTTAC  570

seq1  TGATGTGATAAAATGCTGGCAGAAGTAGCTAGAAGGAAGAAAGGTTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGATAAAATGCTGGCAGAAGTAGCTAGAAGGAAGAAAGGTTTGCT  620

seq1  TTGACTCACTCCAAGGCTGGGACAGTATGTTTGCAACAGAGGGAGGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCACTCCAAGGCTGGGACAGTATGTTTGCAACAGAGGGAGGGAGC  670

seq1  TGGTTACCTGTGTCAGGAGGCAGAAAGAGATCAGTTATGGCTCAGGCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACCTGTGTCAGGAGGCAGAAAGAGATCAGTTATGGCTCAGGCCAT  720

seq1  TTTAGTCAAGCTGGGGCCTGTTGATGTCTACTTTTAAGGTAAGTTTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCAAGCTGGGGCCTGTTGATGTCTACTTTTAAGGTAAGTTTTTCT  770

seq1  ACTTTAGTTAAATAATTCTGGAAACACCCACATAGACACCACAGGACTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGTTAAATAATTCTGGAAACACCCACATAGACACCACAGGACTAG  820

seq1  GGCTGTAGGTTTGATGGTCTCTTCACAGTTAATGATTCCTATTGTGTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAGGTTTGATGGTCTCTTCACAGTTAATGATTCCTATTGTGTCCC  870

seq1  TTTATTGTATTTATTTATTTTAATTATTGTGGAGGTGTAGGTACACATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTATTTATTTATTTTAATTATTGTGGAGGTGTAGGTACACATTT  920

seq1  ATATGCATGCTTGTAAAAATCAGAGATCAACCTTGGGCATTGTCCCCCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATGCTTGTAAAAATCAGAGATCAACCTTGGGCATTGTCCCCCTT  970

seq1  TGTTTGAGAGAGGGCTTTTTATTGTCCTGGTAATCTTTGATTAGACTAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGAGAGGGCTTTTTATTGTCCTGGTAATCTTTGATTAGACTAAG  1020

seq1  CTAAAAGGTAAGTGAGGCCCAGGAAACCACCTATCTTCATTTCCTTTATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGGTAAGTGAGGCCCAGGAAACCACCTATCTTCATTTCCTTTATG  1070

seq1  CAGGAATTC  1109
      |||||||||
seq2  CAGGAATTC  1079