BAC Information

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BAC

Clone NameB6Ng01-142K24
Chromosome1 (Build37)
Map Location 179,748,066 - 179,933,369
singlet/doubletdoublet
Overlap geneEG631584, EG545391
Upstream geneSdccag8, LOC666235, Akt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss
Downstream geneLOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, Smyd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142K24.bB6Ng01-142K24.g
ACCDH940819DH940820
length1,0721,111
definitionDH940819|Mus musculus domesticus DNA, BAC clone: B6Ng01-142K24, 5' end.DH940820|Mus musculus domesticus DNA, BAC clone: B6Ng01-142K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,748,066 - 179,748,704)(179,932,244 - 179,933,369)
sequence
gaattctaagtttactatgttgaactagccttgagatttctagctcctac
ccagcaaactgcaatgcctcatttctttcactatcaactctggaggcatt
tcgtctgaaagagtaacatccttaagaaattccaagcccagggtcatctc
aacactgactaggatactggtggatgccagcaagcaatgttcaatttaac
ttagttatttgtcagatcattccttaggggaacctataataaaacaatac
tgaaggtaagcacgcaaaactctcagagacaaatctgaaacacatctgtg
ttagggaatgccaaagatcttccaggtgaccagtttccgtgaaacttttt
gcctccgcactgcggccaagattttggacttgtcacagagattccactgg
agtgggtgtggcatttcctccctttttatttttagacaaagttccagaac
atcccacctcttcgtggctagggaatctcagaagaacgctgaagataagt
ggaaacaacaattactaataaactaatgccaataataataacaagcaaga
ttatatattgaacccaatccaagggattcaatgcactaagattatttttt
aaatcgctggctaattcatcattgttccaagtacccaaatgacttctgct
aatatctgaaatttctgccttcaattgctccatataatgtgaaatatttg
aatcttttcacactccctgcaaatgagccttagtcttttcccaatcaatg
gttgcattataaggtaatggcgtgacacaaaaatattgaaatgaagcatg
acatttggtagctaacctaaccttaatatttgctctatcctgtcccactg
ctaaaactacttcttctaaagcattagcctttgcctccagtttcttatca
tgtctgacttaaaagtttagagtggacatattccaatggcaatttatatg
caggtagatgtgaaatagatcatcaaacagatggggaggcagaaaatatt
agatgtttttatatagaagttaggtctggtctacctcccagggccatgct
ccagaatagactcagactcaaa
gaattccagatccactccacatgggtgacactatgaacatacttaagggc
atgtatcagagggggtaacaatagaagggtaataatgagaagaaaaagaa
gatgcagggttaagcatctagtaaacagagataaaagccaagttatgact
aactcttaggaaatactaaactttttaaagatatttgatacttacagaac
tcctggtactaaaaatggaatagtcttggctatttatgtagtacctgtag
aaaaaaaaaaaaggcaggatgtgaatattaacagcagtttctccttgaca
tatgagagactctacacatggttaggacatgcccaggcttccaagagctc
tgccctccccgggaagtaaacctagagcttaaaaaaaaaattcagagatc
gctagccattagtctggctggtcagggcttgctgaatttaagctggcaac
cacgatgtagtccaggttagcctcaaattcctggtaaaccaactgcctca
cccccgagtgcttgaatttcagacacccacttgccatactcgttacataa
atttggtagaacaaatgccactgtttatattacgcttgactctttctttc
atgtaatgaactcagctagaatttagaaaaccaaagactggagtttcaga
aaccattagttttcatcttagcacatgaaaaataaaactcttaagtccta
gttcatgatcatttttatactattcattatcaaggataccttaatttcaa
cataactcacccatctcaagaggaattgtggacgagaaataaggcactgt
gtacatgtaatttattaaatgttgtcaagaaatcacaaagtaaaagaaag
gataaaattcactttcataatatattcgaacccaaatgtaattgatgtaa
aataatgagcagcaggtatttttacattcttttttaatactctgaaatct
gtgtatcatctcaattggaatgttatttttaagctccacaagtaacactg
tcagtataaatctcatgctatgggcttaggctgaaataggggaaaatcag
gggatagaagaatttgggataagggaaggccaggtgagcacctgaaaatt
tgtggggaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_179748066_179748704
seq2: B6Ng01-142K24.b_487_1118

seq1  GTTCCAGAACATCCCACCTCTTCGTGGCTAGGGAATCTCAGAAGAACGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGAACATCCCACCTCTTCGTGGCTAGGGAATCTCAGAAGAACGCT  50

seq1  GAAGATAAGTGGAAACAACAATTACTAATAAACTAATGCCAATAATAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAAGTGGAAACAACAATTACTAATAAACTAATGCCAATAATAATA  100

seq1  ACAAGCAAGATTATATATTGAACCCAATCCAAGGGATTCAATGCACTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAGATTATATATTGAACCCAATCCAAGGGATTCAATGCACTAAG  150

seq1  ATTATTTTTTAAATCGCTGGCTAATTCATCATTGTTCCAAGTACCCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTAAATCGCTGGCTAATTCATCATTGTTCCAAGTACCCAAAT  200

seq1  GACTTCTGCTAATATCTGAAATTTCTGCCTTCAATTGCTCCATATAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGCTAATATCTGAAATTTCTGCCTTCAATTGCTCCATATAATGT  250

seq1  GAAATATTTGAATCTTTTCACACTCCCTGCAAATGAGCCTTAGTCTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTTGAATCTTTTCACACTCCCTGCAAATGAGCCTTAGTCTTTTC  300

seq1  CCAATCAATGGTTGCATTATAAGGTAATGGCGTGACACAAAAATATTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAATGGTTGCATTATAAGGTAATGGCGTGACACAAAAATATTGAA  350

seq1  ATGAAGCATGACATTTGGTAGCTAACCTAACCTTAATATTTGCTCTATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCATGACATTTGGTAGCTAACCTAACCTTAATATTTGCTCTATCC  400

seq1  TGTCCCACTGCTAAAACTACTTCTTCTAAAGCATTAGCCTTTGCCTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCACTGCTAAAACTACTTCTTCTAAAGCATTAGCCTTTGCCTCCAG  450

seq1  TTTCTTATCATGTCTGACTTAAAAGTTTAGGAGTGGACATATTCCAATGG  500
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTCTTATCATGTCTGACTTAAAAGTTTA-GAGTGGACATATTCCAATGG  499

seq1  CAATTTATATGCAGGGTAGATGTGAAATAGATCATCAAACAGATGGGAAG  550
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  CAATTTATATGCA-GGTAGATGTGAAATAGATCATCAAACAGATGGGGAG  548

seq1  GCAGAAAAATATTAAGATG-TTTTATATAGAAGTTAGGTCTGGTTCTACC  599
      |||| |||||||| ||||| ||||||||||||||||||||||| ||||||
seq2  GCAG-AAAATATT-AGATGTTTTTATATAGAAGTTAGGTCTGG-TCTACC  595

seq1  TCCCAGGCCCATGCTCCCAGAATTAAGACTCAGACTCAAA  639
      ||||||| ||||||| |||||||  |||||||||||||||
seq2  TCCCAGGGCCATGCT-CCAGAAT--AGACTCAGACTCAAA  632

seq1: chr1_179932244_179933369
seq2: B6Ng01-142K24.g_68_1178 (reverse)

seq1  ATTTCCCCACAAATCTTCAGTGCTGCCTCACCTCGCCTTCCTCTATCCCA  50
      |||||||||||||| ||||  | || ||||||| |||||||  |||||||
seq2  ATTTCCCCACAAATTTTCA--GGTG-CTCACCTGGCCTTCCCTTATCCCA  47

seq1  GAATTCTTTCTATCCCCTGATGTTCCCCCTATTTCAGCCTAAG-CCATAG  99
       ||||| |||||||||||||| || |||||||||||||||||| ||||||
seq2  -AATTC-TTCTATCCCCTGAT-TTTCCCCTATTTCAGCCTAAGCCCATAG  94

seq1  GCCATGAGATTTATTACTGACAGGTGTTACTTGT-GAGCTTTTAAAAATA  148
        ||||||||||| |||||||| ||||||||||| ||||  |||||||||
seq2  --CATGAGATTTA-TACTGACA-GTGTTACTTGTGGAGC--TTAAAAATA  138

seq1  CATTTCAAATTGAGATGGATACAACAGATTTCAAGGAGTTATTAAAAAAG  198
         ||| ||||||||| ||||| ||||||||||  ||| |||||||||||
seq2  ACATTCCAATTGAGAT-GATAC-ACAGATTTCA--GAG-TATTAAAAAAG  183

seq1  AATGTAAAAATACCTTGCTGCTCATTATTTTACATCAATTACATTTGGGT  248
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATGTAAAAATACC-TGCTGCTCATTATTTTACATCAATTACATTTGGGT  232

seq1  TCGAATATATTATGAAAGTGAATTTTATCC-TTCTTTTACTTTGTGATTT  297
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCGAATATATTATGAAAGTGAATTTTATCCTTTCTTTTACTTTGTGATTT  282

seq1  CTTGACAACATTTAATAAATTACATGTACACAGTGCCTTATTTCTCGTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACAACATTTAATAAATTACATGTACACAGTGCCTTATTTCTCGTCC  332

seq1  ACAATTCCTCTTGAGATGGGTGAGTTATGTTGAAATTAAGGTATCCTTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCCTCTTGAGATGGGTGAGTTATGTTGAAATTAAGGTATCCTTGA  382

seq1  TAATGAATAGTATAAAAATGATCATGAACTAGGACTTAAGAGTTTTATTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATAGTATAAAAATGATCATGAACTAGGACTTAAGAGTTTTATTT  432

seq1  TTCATGTGCTAAGATGAAAACTAATGGTTTCTGAAACTCCAGTCTTTGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGCTAAGATGAAAACTAATGGTTTCTGAAACTCCAGTCTTTGGT  482

seq1  TTTCTAAATTCTAGCTGAGTTCATTACATGAAAGAAAGAGTCAAGCGTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAATTCTAGCTGAGTTCATTACATGAAAGAAAGAGTCAAGCGTAA  532

seq1  TATAAACAGTGGCATTTGTTCTACCAAATTTATGTAACGAGTATGGCAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAGTGGCATTTGTTCTACCAAATTTATGTAACGAGTATGGCAAG  582

seq1  TGGGTGTCTGAAATTCAAGCACTCGGGGGTGAGGCAGTTGGTTTACCAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTCTGAAATTCAAGCACTCGGGGGTGAGGCAGTTGGTTTACCAGG  632

seq1  AATTTGAGGCTAACCTGGACTACATCGTGGTTGCCAGCTTAAATTCAGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAGGCTAACCTGGACTACATCGTGGTTGCCAGCTTAAATTCAGCA  682

seq1  AGCCCTGACCAGCCAGACTAATGGCTAGCGATCTCTGAATTTTTTTTTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGACCAGCCAGACTAATGGCTAGCGATCTCTGAATTTTTTTTTTA  732

seq1  AGCTCTAGGTTTACTTCCCGGGGAGGGCAGAGCTCTTGGAAGCCTGGGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAGGTTTACTTCCCGGGGAGGGCAGAGCTCTTGGAAGCCTGGGCA  782

seq1  TGTCCTAACCATGTGTAGAGTCTCTCATATGTCAAGGAGAAACTGCTGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTAACCATGTGTAGAGTCTCTCATATGTCAAGGAGAAACTGCTGTT  832

seq1  AATATTCACATCCTGCCTTTTTTTTTTTTCTACAGGTACTACATAAATAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCACATCCTGCCTTTTTTTTTTTTCTACAGGTACTACATAAATAG  882

seq1  CCAAGACTATTCCATTTTTAGTACCAGGAGTTCTGTAAGTATCAAATATC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACTATTCCATTTTTAGTACCAGGAGTTCTGTAAGTATCAAATATC  932

seq1  TTTAAAAAGTTTAGTATTTCCTAAGAGTTAGTCATAACTTGGCTTTTATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAGTTTAGTATTTCCTAAGAGTTAGTCATAACTTGGCTTTTATC  982

seq1  TCTGTTTACTAGATGCTTAACCCTGCATCTTCTTTTTCTTCTCATTATTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTACTAGATGCTTAACCCTGCATCTTCTTTTTCTTCTCATTATTA  1032

seq1  CCCTTCTATTGTTACCCCCTCTGATACATGCCCTTAAGTATGTTCATAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTATTGTTACCCCCTCTGATACATGCCCTTAAGTATGTTCATAGT  1082

seq1  GTCACCCATGTGGAGTGGATCTGGAATTC  1126
      |||||||||||||||||||||||||||||
seq2  GTCACCCATGTGGAGTGGATCTGGAATTC  1111