BAC Information

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BAC

Clone NameB6Ng01-142M01
Chromosome10 (Build37)1 (Build37)
Map Location 104,055,257 - 104,055,804109,542,367 - 109,543,482
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142M01.bB6Ng01-142M01.g
ACCDH940869DH940870
length1,1721,110
definitionDH940869|Mus musculus domesticus DNA, BAC clone: B6Ng01-142M01, 5' end.DH940870|Mus musculus domesticus DNA, BAC clone: B6Ng01-142M01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,055,257 - 104,055,804)(109,542,367 - 109,543,482)
sequence
gaattcatggaatgcagagttaagatgactggctgatagaaggaatagaa
agagtaatgatgagaggtaccctgccaacacctgcaacttgtttgttgtt
ttgctagaagcagaggttggaattgtttacaaaagtggaaaagaatagta
tcagagttgtcatgaagcacaggaatggagtggtttgaattgcctactag
acttctacaaagatgtaatgagcagagggtagtacaggcagtctgtgaga
cattaatattagtggaaacacttgacacattgcttctgttgggtagaagg
atttcaagacttgacccaggcacatgatactaataacactgtagaaaaca
ctaagaagaaaaggaaggggactggaaacaaactgagaatttcaggttat
tttcatcacacagggcaataggacaaaagactatggttttgtggtttaag
atgtcagcatggtcaggtacccaaatgtgctgtcaaggggaacaattgta
agataatggtaagagcagtagcagagaggataaagaaatatttcgttaga
tgtggagaaagcatttgacaaaatccaacaacgtaatccagtatataaac
aaactcaaagacaaaaaccacatgatcatctcattagatgcagagaaagc
gtttgacaaaatccaacacccattcatgataaaagtcttggaaagatcag
gaattcaagacccatacctaaacatgataaaagcaatctacagcaaacca
gtacccaacatcaatgtaaatggtgagaagctggaagcaatcccagtaaa
atcagggactagacaaggctgcccactttctccctacctattcaacatag
tacttgaagtcctagtcagagcaatttgacaacaaaaggagatcaagggg
atacaatttggaaagggagaagtcaaatatcactttttgcagacgatatg
atagtatataatacgtgaccctaaaattccaccacagactcctaaacctg
ataaacagcttcgtgaagttgctggaaataaattacttaacaagtcaatg
ggctatctctacacaaagaaataaacaggctggaaaagaaataggaaaca
acacccttctcattgtcacaaataatataaagtaccttgggtgactctaa
cctaaggaggtgaagatctgta
gaattctgggtaatacttcatatcatcttatcatcagaggggtttactct
tgggagctcaaaggtccccacccctgtggaggcaggtctcctactgctat
cctagggtccaggaagttaaccattcttctgaccaagagtatttgtccac
attgcttattcgcctcagagcagttcatggtgggaccagtctttcatcaa
cagctaagagggcctgtgcagtctgtggaatcctgaaagtctactttaca
gtaaagagcaagtctgcagtggcagatagagataattcccgagcactatt
aataccttagagagataggaagatgtgttatttccacaaataccacagaa
cagaaagtgtgttgagtactcctttatgcacatgctagatgtcaacgctg
tcctgaaatagaaaaccactattggtggtgaaaaataaagtagcagtaga
tgcaagggttagggttgctggtgtggaatctgggacagagtaatcatgga
ctgtgtattgggctgaggagatgggaacaagtgcttgtctcacaagcatt
aggagctgaattgaatccttagaaatcgtgtttaaaacctgtgtggagac
aggagaagttctgggacttgctgtattgcctagctccagagtcattccaa
agaccctatctcaagggaataaggcagagaatgacagagcaggactcctg
aaattctattatggcttccagacataagtgtaggcctcctcccatgcaca
cccactacaaacatacctaatacaggcatgtctaagacatacattatata
cactctacacacatattacatacacacacacacacacacacatacacaca
ctatacacacacacacacacacacacatacactgcatgtgttgccttgta
atgtatatcagttcaaaagatgagttttgagtatgcaaagctatttgttg
gaagctgctgagctttctcaacaacacacatagggctgtactctagcagt
actgctgtcagtgtcagtgacagagtgaaagctgactcctttagtctggg
taagaacttcctctcatcttagggaaactaagcctctggcataaacatgc
tccaatcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104055257_104055804
seq2: B6Ng01-142M01.b_679_1217 (reverse)

seq1  TACAGATCTTTCACTTCCTTA-GTTAGAGTCACGCCAAGGAATTTTATAT  49
      |||||||| ||||| |||||| ||||||||||| |||||| | |||||||
seq2  TACAGATC-TTCACCTCCTTAGGTTAGAGTCAC-CCAAGGTACTTTATAT  48

seq1  TATTTGTGGCTATTGAGAAGGGTGTTGTTTCCCTAATTTCTTTCTCAGCC  99
      |||||||| | | |||||||||||||||||||   ||||||||  |||||
seq2  TATTTGTGAC-AATGAGAAGGGTGTTGTTTCC--TATTTCTTTTCCAGCC  95

seq1  TGTTT-GTCCTTTGTGTAGAGAAAGCCCATTGACTTGTTTGAGTTAATTT  148
      |||||  | ||||||||||||| |||||||||||||| || |||  | ||
seq2  TGTTTATTTCTTTGTGTAGAGATAGCCCATTGACTTG-TTAAGT--AATT  142

seq1  TATATCCAGCTACTTCACTGAAGCTGTATATTAGGTTTAGGAGTTCTCTG  198
      ||| |||||| ||||||| |||||||| ||| ||||||||||| ||| ||
seq2  TATTTCCAGCAACTTCAC-GAAGCTGTTTATCAGGTTTAGGAG-TCTGTG  190

seq1  GTTGAATTTTTAGGGTCACTTA-TATATACTATCATATCATCTGCAAAAA  247
      || ||| |||||||||||| || |||||||||||||||| ||||||||||
seq2  GTGGAA-TTTTAGGGTCACGTATTATATACTATCATATCGTCTGCAAAAA  239

seq1  GTGATATTTTGACTTCTTCCTTTCCAATTTGTATCCCCTTGATCTCCTTT  297
      |||||| |||||||||| ||||||||| ||||||||||||||||||||||
seq2  GTGATA-TTTGACTTCTCCCTTTCCAAATTGTATCCCCTTGATCTCCTTT  288

seq1  TGTTGTCTAATTGCTCTGGCTAGGACTTCAGGTACAATGTTGAATATGTA  347
      ||||||| |||||||||| ||||||||||| |||| |||||||||| |||
seq2  TGTTGTCAAATTGCTCTGACTAGGACTTCAAGTACTATGTTGAATAGGTA  338

seq1  GGGAGAGAGTGGAAAGCCTTGTCTAGTCCCTGATTTTAGTGGGATTGCTT  397
      |||||| |||||  |||||||||||||||||||||||| |||||||||||
seq2  GGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTTACTGGGATTGCTT  388

seq1  CAAGCTTCTCACCATTTACCTTGATGCTGGTTACTGGTTTGCTGTAGATT  447
      | ||||||||||||||||| |||||| ||| |||||||||||||||||||
seq2  CCAGCTTCTCACCATTTACATTGATGTTGGGTACTGGTTTGCTGTAGATT  438

seq1  GCTTTTATCATGTTTAGGTATGGGCCTTGAATTCCTGATCTTCCCAAGAC  497
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  GCTTTTATCATGTTTAGGTATGGGTCTTGAATTCCTGATCTTTCCAAGAC  488

seq1  TTTTATCATGAATGGGTGTTGGATTTTGTCAAATGCTTTCTCATCATCTA  547
      ||||||||||||||||||||||||||||||||| ||||||||  ||||||
seq2  TTTTATCATGAATGGGTGTTGGATTTTGTCAAACGCTTTCTCTGCATCTA  538

seq1  A  548
      |
seq2  A  539

seq1: chr1_109542367_109543482
seq2: B6Ng01-142M01.g_65_1174

seq1  GAATTCTGGGTAATACTTCATATCATCTTATCATCAGAGGGGTTTACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTAATACTTCATATCATCTTATCATCAGAGGGGTTTACTCT  50

seq1  TGGGAGCTCAAAGGTCCCCACCCCTGTGGAGGCAGGTCTCCTACTGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCTCAAAGGTCCCCACCCCTGTGGAGGCAGGTCTCCTACTGCTAT  100

seq1  CCTAGGGTCCAGGAAGTTAACCATTCTTCTGACCAAGAGTATTTGTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGTCCAGGAAGTTAACCATTCTTCTGACCAAGAGTATTTGTCCAC  150

seq1  ATTGCTTATTCGCCTCAGAGCAGTTCATGGTGGGACCAGTCTTTCATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTATTCGCCTCAGAGCAGTTCATGGTGGGACCAGTCTTTCATCAA  200

seq1  CAGCTAAGAGGGCCTGTGCAGTCTGTGGAATCCTGAAAGTCTACTTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAGAGGGCCTGTGCAGTCTGTGGAATCCTGAAAGTCTACTTTACA  250

seq1  GTAAAGAGCAAGTCTGCAGTGGCAGATAGAGATAATTCCCGAGCACTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAGCAAGTCTGCAGTGGCAGATAGAGATAATTCCCGAGCACTATT  300

seq1  AATACCTTAGAGAGATAGGAAGATGTGTTATTTCCACAAATACCACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTTAGAGAGATAGGAAGATGTGTTATTTCCACAAATACCACAGAA  350

seq1  CAGAAAGTGTGTTGAGTACTCCTTTATGCACATGCTAGATGTCAACGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTGTGTTGAGTACTCCTTTATGCACATGCTAGATGTCAACGCTG  400

seq1  TCCTGAAATAGAAAACCACTATTGGTGGTGAAAAATAAAGTAGCAGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAATAGAAAACCACTATTGGTGGTGAAAAATAAAGTAGCAGTAGA  450

seq1  TGCAAGGGTTAGGGTTGCTGGTGTGGAATCTGGGACAGAGTAATCATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGGTTAGGGTTGCTGGTGTGGAATCTGGGACAGAGTAATCATGGA  500

seq1  CTGTGTATTGGGCTGAGGAGATGGGAACAAGTGCTTGTCTCACAAGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATTGGGCTGAGGAGATGGGAACAAGTGCTTGTCTCACAAGCATT  550

seq1  AGGAGCTGAATTGAATCCTTAGAAATCGTGTTTAAAACCTGTGTGGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGAATTGAATCCTTAGAAATCGTGTTTAAAACCTGTGTGGAGAC  600

seq1  AGGAGAAGTTCTGGGACTTGCTGTATTGCCTAGCTCCAGAGTCATTCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGTTCTGGGACTTGCTGTATTGCCTAGCTCCAGAGTCATTCCAA  650

seq1  AGACCCTATCTCAAGGGAATAAGGCAGAGAATGACAGAGCAGGACTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTATCTCAAGGGAATAAGGCAGAGAATGACAGAGCAGGACTCCTG  700

seq1  AAATTCTATTATGGCTTCCAGACATAAGTGTAGGCCTCCTCCCATGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTATTATGGCTTCCAGACATAAGTGTAGGCCTCCTCCCATGCACA  750

seq1  CCCACTACAAACATACCTAATACAGGCATGTCTAAGACATACATTATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTACAAACATACCTAATACAGGCATGTCTAAGACATACATTATATA  800

seq1  CACTCTACACACATATTACATACACACACACACACACACACATACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTACACACATATTACATACACACACACACACACACACATACACACA  850

seq1  CTATACACACACACACACACACACACATACACTGCATGTGTTGCCTTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACACACACACACACACACACACATACACTGCATGTGTTGCCTTGTA  900

seq1  ATGTATATTCAGTTCAAAAGATGAGTTTTGAGTATGCAAGGCTATTTGTT  950
      ||||||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGTATA-TCAGTTCAAAAGATGAGTTTTGAGTATGCAAAGCTATTTGTT  949

seq1  GGAAGCTGCTGAGCCTTTCTCCACCAACACACATAGGGCTGTACTTCTAG  1000
      ||||||||||||| |||||| || |||||||||||||||||||| |||||
seq2  GGAAGCTGCTGAG-CTTTCT-CAACAACACACATAGGGCTGTAC-TCTAG  996

seq1  CAAGTACTGCTGTCAGTTGTCAGTGACAGAGTGAAAGCTGACTCCTTTAG  1050
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  C-AGTACTGCTGTCAG-TGTCAGTGACAGAGTGAAAGCTGACTCCTTTAG  1044

seq1  TCT-GGTAAGA--CTGCTCTCATCTTAGGGAAACTTAG-CTCTGGTCATA  1096
      ||| |||||||   | ||||||||||||||||||| || |||||| ||||
seq2  TCTGGGTAAGAACTTCCTCTCATCTTAGGGAAACTAAGCCTCTGG-CATA  1093

seq1  ATCATTGGCTCACAATCAAA  1116
      | |||  |||| ||||||||
seq2  AACAT--GCTC-CAATCAAA  1110