BAC Information

Click to search

BAC

Clone NameB6Ng01-143H11
Chromosome15 (Build37)1 (Build37)
Map Location 32,542,423 - 32,543,570119,828,452 - 119,829,071
singlet/doubletsingletsinglet
Overlap geneSema5a
Upstream geneA930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik
Downstream geneLOC100040962, Sdc2, Pgcp, 1700084J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143H11.bB6Ng01-143H11.g
ACCDH941393DH941394
length1,160848
definitionDH941393|Mus musculus domesticus DNA, BAC clone: B6Ng01-143H11, 5' end.DH941394|Mus musculus domesticus DNA, BAC clone: B6Ng01-143H11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,542,423 - 32,543,570)(119,828,452 - 119,829,071)
sequence
gaattctttgggtgacctcgtgaagctgttctcctgcgcttattagaccg
ttgcaagttctctaatggtccagcatctgagggaagacctctacctgagc
aggtgccatggctatttgatggcatctctcccccactctgctcttgggtg
tctttctgtggagtactgtgtcttacacatgatttttttcttgtctctat
tggttgtctaatctctctgaatccgaaagcgtctcatatgtttgacatgt
ctatttactgtcaagctctgctcatcccatatccttggcttgtcatgatg
accacacatcagggaaaagctcattctttgtaacagaaattttatacttg
ggggtattttccttccttgtccaaggaacatttcctgagctgaggatcta
gatggtgaatatatacttcttaaaatgactttaaaaacgtgtgtccacgg
ccctcccactaatcttccacactttcacttggtgagagttggagagattt
aactatcttaggacttgcaagacttccagaggcgggaaggcagaatagcc
tgacttctagatatggctaggaaagcctgagtcctgtggtcacctctgcc
tcctgactcaatgaaatgggaactctccaagtccagtgtcagagtctatc
aacaccctaagtaccaggttatgatttcatattgatggataagccagaaa
gagattagttagtagctgttgtgtcaggtccaccctgtgctctgtcatct
agaacttttctttcttccaggctacagatgaacactgggagtggacacca
agagcaaagggcccaagaggtggcactcatgaaggtattgtcaaacactg
acctacagctgggatgttagatccttgggtacctcagaaccttgaaaata
tcagctcatgttagaaagagataaatatgtgtgctcagtcatcaccatag
aaatgatattcccagagatgactgccactcagaacctcggttgctcatca
tttgagtgattatctatagattataaatggcagcatcgacagttcacata
aataggtcagttgtgataaaactgactaagtataccttaagatattttct
tctaaatacctctgaataatgctgccagcaggctgttttctgagactcaa
gtgaagtgaa
gaattccactcagaccttctcttgtgtggcccatcttcctgcatttgatc
cctgaagagattccttgctgtcctaagatgccatcggggcagatacgaaa
aatccctgtgtaaagctcacccagaatcgcactgaacacagatgactttc
gttcatggtttgggaaatgtgcactgagtggatgttttatggagataata
aaatatgtgggattggtttgtaatgttttagttatgaaagattaaaaatc
ctagtaagctaaaaatcattgttattaaaattagttacttcacaaccaat
ttttattaatatggtgctaagattatagtaaaatgtaaattttttttaaa
ttgctggtcttcccatggggctaccctaatcttcagcttcttcaagattt
tctaaaattggaccatggggatccctgccttgaattcattgagtgggtgc
tagtatctgcatctgactctttgatctgcttgttgggactctcagagggc
atccatccttggcttctgtctgcaagtacacgacagcatcagtaatagtg
tcaggtccaggggcctctccttgagcttgatcccagtttgcaattgtcat
tggacctcctttctctcaggctcttccccatttttgtccctgcagttcct
tcagacaagaacagttctgggtcagagatttttactgtggcatagccatc
ccatcactccacttggtgtcttgtccctcgactggaggtggacactacaa
gttccccctccccactgtagggcatttcattcaatattcctccccttgtg
tcctgagagttttcacctccaaggtctctggtgcattctagaaggtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_32542423_32543570
seq2: B6Ng01-143H11.b_81_1204 (reverse)

seq1  TTCATCTTCACTGTAG-CTCAGAAAACAGCCTGCTGGCACGAGCACTTAT  49
      |||| |||||||  || |||||||||||||||||||||   |||| ||||
seq2  TTCA-CTTCACTTGAGTCTCAGAAAACAGCCTGCTGGC---AGCA-TTAT  45

seq1  CTAGAAGTTATTTTAGAAGAAAAATATCTTAAAGTTATACTTTAGTCAGG  99
        ||| ||   |||||||| |||||||||| ||| ||||| ||||||| |
seq2  TCAGAGGT--ATTTAGAAG-AAAATATCTT-AAGGTATAC-TTAGTCA-G  89

seq1  TTTTATCACAAACCTGACTTATTTTAATGTGAACATGGTTCGATGCTGCC  149
      |||||||||||  ||||| |||||  |||||||| ||  |||||||||||
seq2  TTTTATCACAA--CTGACCTATTT--ATGTGAAC-TG--TCGATGCTGCC  132

seq1  ATTTAATAAATCTTATAGATAATCACTCAAATGATGAAGCCAAACCGAGG  199
      |||||   |||| ||||||||||||||||||||||| |||  ||||||||
seq2  ATTTA--TAATC-TATAGATAATCACTCAAATGATG-AGC--AACCGAGG  176

seq1  TTCTTGGAGTGGCAGTCATCTCTGGGAATATCATTTCTAT-GTGATGACT  248
      ||||  |||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCT--GAGTGGCAGTCATCTCTGGGAATATCATTTCTATGGTGATGACT  224

seq1  GAGCACACATATTTATCTCTTTCCTAACATGAGCTGATATTTTCAAGGTT  298
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAGCACACATATTTATCTCTTT-CTAACATGAGCTGATATTTTCAAGGTT  273

seq1  CTGAGGTA-CCAAGGATCTAACATCCCAGCTGTAGGTCAGTGTTTGACAA  347
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTACCCAAGGATCTAACATCCCAGCTGTAGGTCAGTGTTTGACAA  323

seq1  TACC-TCATGAGTGCCACCTCTTGGGCCCTTTGCTCTTGGTGTCCACTCC  396
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCATGAGTGCCACCTCTTGGGCCCTTTGCTCTTGGTGTCCACTCC  373

seq1  CAGTGTTCATCTGTAGCCTTGGAAGAAAGAAAAGTTCTAGATGACAGAGC  446
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGTGTTCATCTGTAGCC-TGGAAGAAAGAAAAGTTCTAGATGACAGAGC  422

seq1  ACAGGGTGGACCTGACACAACAGCTACTAACTAATCTCTTTCTGGCTTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTGGACCTGACACAACAGCTACTAACTAATCTCTTTCTGGCTTAT  472

seq1  CCATCAATATGAAATCATAACCTGGTACTTAGGGTGTTGATAGACTCTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAATATGAAATCATAACCTGGTACTTAGGGTGTTGATAGACTCTGA  522

seq1  CACTGGACTTGGAGAGTTCCCATTTCACTGAGTCAGGAGGCAGAGGTGAC  596
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CACTGGACTTGGAGAGTTCCCATTTCATTGAGTCAGGAGGCAGAGGTGAC  572

seq1  CACAGGACTCAGGCTTTCCTAGCCATATCTAGAAGTCAGGCTATTCTGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGACTCAGGCTTTCCTAGCCATATCTAGAAGTCAGGCTATTCTGCC  622

seq1  TTCCCGCCTCTGGAAGTCTTGCAAGTCCTAAGATAGTTAAATCTCTCCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGCCTCTGGAAGTCTTGCAAGTCCTAAGATAGTTAAATCTCTCCAA  672

seq1  CTCTCACCAAGTGAAAGTGTGGAAGATTAGTGGGAGGGCCGTGGACACAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCAAGTGAAAGTGTGGAAGATTAGTGGGAGGGCCGTGGACACAC  722

seq1  GTTTTTAAAGTCATTTTAAGAAGTATATATTCACCATCTAGATCCTCAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAAAGTCATTTTAAGAAGTATATATTCACCATCTAGATCCTCAGC  772

seq1  TCAGGAAATGTTCCTTGGACAAGGAAGGAAAATACCCCCAAGTATAAAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAATGTTCCTTGGACAAGGAAGGAAAATACCCCCAAGTATAAAAT  822

seq1  TTCTGTTACAAAGAATGAGCTTTTCCCTGATGTGTGGTCATCATGACAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTACAAAGAATGAGCTTTTCCCTGATGTGTGGTCATCATGACAAG  872

seq1  CCAAGGCTATGGGCTGAGCAGAGCTTGACAGTAAATAGACATGTCAAATA  946
      |||||| |||||| |||||||||||||||||||||||||||||||||| |
seq2  CCAAGGATATGGGATGAGCAGAGCTTGACAGTAAATAGACATGTCAAACA  922

seq1  TATGAGCTGCTTTTGGATTCAGAGAGTTTAGACAACCAATCGAGACAAGA  996
      ||||||  ||||| |||||||||||| ||||||||||||| |||||||||
seq2  TATGAGACGCTTTCGGATTCAGAGAGATTAGACAACCAATAGAGACAAGA  972

seq1  AAAAAATCATCTCTTAGACACAGTACTCCACAGAAAGACACCAAAGAGTA  1046
      |||||||||| | | ||||||||||||||||||||||||||| ||||| |
seq2  AAAAAATCATGTGTAAGACACAGTACTCCACAGAAAGACACCCAAGAGCA  1022

seq1  GAGTCTGGGACTGATGCCATGAAATAGCCAAGGCACCTGCTCAGGTAGAG  1096
      ||||  ||||  |||||||| ||||||||| |||||||||||||||||||
seq2  GAGTGGGGGAGAGATGCCATCAAATAGCCATGGCACCTGCTCAGGTAGAG  1072

seq1  GTCTTCCCTTAGATGCTGGACCATTAGAGAACTTGCAACGGTCTCTTAAG  1146
      ||||||||| ||||||||||||||||||||||||||||||||||  ||||
seq2  GTCTTCCCTCAGATGCTGGACCATTAGAGAACTTGCAACGGTCTAATAAG  1122

seq1  CG  1148
      ||
seq2  CG  1124

seq1: chr1_119828452_119829071
seq2: B6Ng01-143H11.g_289_907

seq1  TGTTTTAGTTATGAAAGATTAAAAATCCTAGTAAGCTAAAAATCATTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGTTATGAAAGATTAAAAATCCTAGTAAGCTAAAAATCATTGTT  50

seq1  ATTAAAATTAGTTACTTCACAACCAATTTTTATTAATATGGTGCTAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATTAGTTACTTCACAACCAATTTTTATTAATATGGTGCTAAGAT  100

seq1  TATAGTAAAATGTAAATTTTTTTTAAATTGCTGGTCTTCCCATGGGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTAAAATGTAAATTTTTTTTAAATTGCTGGTCTTCCCATGGGGCTA  150

seq1  CCCTAATCTTCAGCTTCTTCAAGATTTTCTAAAATTGGACCATGGGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATCTTCAGCTTCTTCAAGATTTTCTAAAATTGGACCATGGGGATC  200

seq1  CCTGCCTTGAATTCATTGAGTGGGTGCTAGTATCTGCATCTGACTCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTGAATTCATTGAGTGGGTGCTAGTATCTGCATCTGACTCTTTG  250

seq1  ATCTGCTTGTTGGGACTCTCAGAGGGCATCCATCCTTGGCTTCTGTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTGTTGGGACTCTCAGAGGGCATCCATCCTTGGCTTCTGTCTGC  300

seq1  AAGTACACGACAGCATCAGTAATAGTGTCAGGTCCAGGGGCCTCTCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACGACAGCATCAGTAATAGTGTCAGGTCCAGGGGCCTCTCCTTG  350

seq1  AGCTTGATCCCAGTTTGCAATTGTCATTGGACCTCCTTTCTCTCAGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGATCCCAGTTTGCAATTGTCATTGGACCTCCTTTCTCTCAGGCTC  400

seq1  TTCCCCATTTTTGTCCCTGCAGTTCCTTCAGACAAGAACAGTTCTGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCATTTTTGTCCCTGCAGTTCCTTCAGACAAGAACAGTTCTGGGTC  450

seq1  AGAGATTTTTACTGTGGCATAGCCATCCCATCACTCCACTTGGTGTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTTTACTGTGGCATAGCCATCCCATCACTCCACTTGGTGTCTTG  500

seq1  TCCCTCGACTGGAGGTGGACACTACAAGTTCCCCCTCCCCACTGTAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCGACTGGAGGTGGACACTACAAGTTCCCCCTCCCCACTGTAGGGC  550

seq1  ATTTCATTCAATATTCCTCCCCTTGTGTCCTGAGAGTTTCTCACCTCCAA  600
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTTCATTCAATATTCCTCCCCTTGTGTCCTGAGAGTTT-TCACCTCCAA  599

seq1  GGTCTCTGGTGCATTCTAGA  620
      ||||||||||||||||||||
seq2  GGTCTCTGGTGCATTCTAGA  619