BAC Information

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BAC

Clone NameB6Ng01-143M17
Chromosome1 (Build37)
Map Location 83,896,909 - 84,038,527
singlet/doubletdoublet
Overlap gene5033414K04Rik
Upstream geneA030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream geneLOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143M17.bB6Ng01-143M17.g
ACCDH941637DH941638
length1,000707
definitionDH941637|Mus musculus domesticus DNA, BAC clone: B6Ng01-143M17, 5' end.DH941638|Mus musculus domesticus DNA, BAC clone: B6Ng01-143M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,037,529 - 84,038,527)(83,896,909 - 83,897,603)
sequence
gaattctctgtataacttttagaaagaagtgtgtgtgtgtgtgtgcatat
gagagaaagctgaaaatatatccaaagaattccccttctaccagactacc
tttctctcacatataaacttgattatttctagtttcaaaaagtagaatga
atgaatatactttgtattttccctttaggtacccaaattagttgtttcct
tgtgtgtgtgtgtgtgtgtgtgtgtgtttgtatgtacatacatagaatac
atagaatacatacaacaggatgctccagcaccctcacctccactgagcca
cttaactcttacaggattctaaaacagacactcagaatcccccaagcaag
agcagccaatcattgtgcctcaagcttccatctcccaccaatctagtttt
tgtctctgtgattgtgactgttttaatgtgataaattacagtcttcatct
actttgtgactgacttattatgttgaacattaacagtctcagattttatc
catgtggtagcacatgcaagtgtttcctccccttggcactaaataatatt
tcactgtatatgcatattcacttggatgatgctgggcattgggttctttc
catactttaactgttaggctcagtgggtcctttgatcttgaacatgtaaa
ttatctcattaagatgcagcaatttgctcttttgagaaggacaaatgagt
catgtgaatcaaaatcagttttgactttttgatgaactactgtagtgttt
gtataggttcaatgaaacccacaattagaggccagtcctcaggttggtgc
cggggggacagattagtactttggaagaagtgggaattaagtagagacat
gagatgctttttagtgagttccctttatagttcttgagagaacgctgaaa
aagttcagctagctgtccctgccctcttcttcttctgctgctcctgctag
catccaactctttcgttctattgaagatgatgtggcctattaatttgccc

gaattcttgggagtgattgactcaacaggcaaacatgcctttaaagactg
gagttggcgggactgttctaccctgtttacagtgattaaatccgactctt
cagcgaatccatgaaaccacatagttggaacctgttcccacttagaacat
ttaactccgttccagcttttgcaattgtaaaattgttaaattaatcattc
tcctgtgcgtgcttctggatattgatcaattagaattaattcttggaaat
ggtaggtcaaaagttacacatttgaaatgcataataactaaattggtaca
tttaatctagaatcttacagttgttgccaaaatatcacagaaagtgctaa
ttgttttgtttgggttttttggttgttttggtttggttcggttcggtttg
gtttggtttgtttatattttgggattttgtttttgctcggctttgttttt
gttcttttgttttgttttttgtcagcaaaagttcttattgaatcacaaag
aaaaaaataaataataccaaaaaagtatagcaaaagaaagttcattagca
taaaacacagattagccatgtttttaggaagcctacataagtatcttttt
ttccctacctgtcaatttccaacaggatctataatttttctaattttttt
cttcacacattggattttggaggacttaaatcagtttgagaggctcttag
tggactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_84037529_84038527
seq2: B6Ng01-143M17.b_49_1048 (reverse)

seq1  GGGC-AACTAATAGG-CACATCTATCTTCAATAGAAAGAAGAGGTTGGAT  48
      |||| || ||||||| |||||| ||||||||||||| |||   |||||||
seq2  GGGCAAATTAATAGGCCACATC-ATCTTCAATAGAACGAAAGAGTTGGAT  49

seq1  GCTTAGCAGGAGCAGACAGAAGAAGAAGAGGGCAGGGACAGCTTAGCTTG  98
      || |||||||||||| |||||||||||||||||||||||||| |||| ||
seq2  GC-TAGCAGGAGCAG-CAGAAGAAGAAGAGGGCAGGGACAGC-TAGC-TG  95

seq1  AACTTTTACAGCGTTCTCTCAAGAACTATAAA-GGAACTCACTAAAAAGC  147
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  AACTTTTTCAGCGTTCTCTCAAGAACTATAAAGGGAACTCACTAAAAAGC  145

seq1  ATCTCATGTCTCTAC-TAATTCCCACCTCTTCCAAAGTACTATTCTGT-C  195
      ||||||||||||||| |||||||||| ||||||||||||||| ||||| |
seq2  ATCTCATGTCTCTACTTAATTCCCACTTCTTCCAAAGTACTAATCTGTCC  195

seq1  CCCCGGCACCAACCTGAGGACTGGCCTCTAATTGTGGG-TTCATTGAACC  244
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCCCGGCACCAACCTGAGGACTGGCCTCTAATTGTGGGTTTCATTGAACC  245

seq1  TATACAAACACTACAGTAGTTCATCAAAAAGTCAAAACTGATTTTGATTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAACACTACAGTAGTTCATCAAAAAGTCAAAACTGATTTTGATTC  295

seq1  ACATGACTCATTTGTCCTTCTCAAAAGAGCAAATTGCTGCATCTTAATGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACTCATTTGTCCTTCTCAAAAGAGCAAATTGCTGCATCTTAATGA  345

seq1  GATAATTTACATGTTCAAGATCAAAGGACCCACTGAGCCTAACAGTTAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTACATGTTCAAGATCAAAGGACCCACTGAGCCTAACAGTTAAA  395

seq1  GTATGGAAAGAACCCAATGCCCAGCATCATCCAAGTGAATATGCATATAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAAAGAACCCAATGCCCAGCATCATCCAAGTGAATATGCATATAC  445

seq1  AGTGAAATATTATTTAGTGCCAAGGGGAGGAAACACTTGCATGTGCTACC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATATTATTTAGTGCCAAGGGGAGGAAACACTTGCATGTGCTACC  495

seq1  ACATGGATAAAATCTGAGACTGTTAATGTTCAACATAATAAGTCAGTCAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATAAAATCTGAGACTGTTAATGTTCAACATAATAAGTCAGTCAC  545

seq1  AAAGTAGATGAAGACTGTAATTTATCACATTAAAACAGTCACAATCACAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGATGAAGACTGTAATTTATCACATTAAAACAGTCACAATCACAG  595

seq1  AGACAAAAACTAGATTGGTGGGAGATGGAAGCTTGAGGCACAATGATTGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAACTAGATTGGTGGGAGATGGAAGCTTGAGGCACAATGATTGG  645

seq1  CTGCTCTTGCTTGGGGGATTCTGAGTGTCTGTTTTAGAATCCTGTAAGAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTGCTTGGGGGATTCTGAGTGTCTGTTTTAGAATCCTGTAAGAG  695

seq1  TTAAGTGGCTCAGTGGAGGTGAGGGTGCTGGAGCATCCTGTTGTATGTAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGGCTCAGTGGAGGTGAGGGTGCTGGAGCATCCTGTTGTATGTAT  745

seq1  TCTATGTATTCTATGTATGTACATACAAACACACACACACACACACACAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTATTCTATGTATGTACATACAAACACACACACACACACACACAC  795

seq1  ACACAAGGAAACAACTAATTTGGGTACCTAAAGGGAAAATACAAAGTATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGAAACAACTAATTTGGGTACCTAAAGGGAAAATACAAAGTATA  845

seq1  TTCATTCATTCTACTTTTTGAAACTAGAAATAATCAAGTTTATATGTGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCATTCTACTTTTTGAAACTAGAAATAATCAAGTTTATATGTGAG  895

seq1  AGAAAGGTAGTCTGGTAGAAGGGGAATTCTTTGGATATATTTTCAGCTTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTAGTCTGGTAGAAGGGGAATTCTTTGGATATATTTTCAGCTTT  945

seq1  CTCTCATATGCACACACACACACACACTTCTTTCTAAAAGTTATACAGAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATATGCACACACACACACACACTTCTTTCTAAAAGTTATACAGAG  995

seq1  AATTC  999
      |||||
seq2  AATTC  1000

seq1: chr1_83896909_83897603
seq2: B6Ng01-143M17.g_70_776

seq1  GAATTCTTGGGAGTGATTGACTCAACAGGCAAACATGCCTTTAAAGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGAGTGATTGACTCAACAGGCAAACATGCCTTTAAAGACTG  50

seq1  GAGTTGGCGGGACTGTTCTACCCTGTTTACAGTGATTAAATCCGACTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGCGGGACTGTTCTACCCTGTTTACAGTGATTAAATCCGACTCTT  100

seq1  CAGCGAATCCATGAAACCACATAGTTGGAACCTGTTCCCACTTAGAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGAATCCATGAAACCACATAGTTGGAACCTGTTCCCACTTAGAACAT  150

seq1  TTAACTCCGTTCCAGCTTTTGCAATTGTAAAATTGTTAAATTAATCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCCGTTCCAGCTTTTGCAATTGTAAAATTGTTAAATTAATCATTC  200

seq1  TCCTGTGCGTGCTTCTGGATATTGATCAATTAGAATTAATTCTTGGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGCGTGCTTCTGGATATTGATCAATTAGAATTAATTCTTGGAAAT  250

seq1  GGTAGGTCAAAAGTTACACATTTGAAATGCATAATAACTAAATTGGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTCAAAAGTTACACATTTGAAATGCATAATAACTAAATTGGTACA  300

seq1  TTTAATCTAGAATCTTACAGTTGTTGCCAAAATATCACAGAAAGTGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTAGAATCTTACAGTTGTTGCCAAAATATCACAGAAAGTGCTAA  350

seq1  TTGTTTTGTTTGGGTTTTTTGGTTGTTTTGGTTTGGTTCGGTTCGGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTGGGTTTTTTGGTTGTTTTGGTTTGGTTCGGTTCGGTTTG  400

seq1  GTTTGGTTTGTTTATATTTTGGGATTTTGTTTTTGCTCGGCTTTGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTTGTTTATATTTTGGGATTTTGTTTTTGCTCGGCTTTGTTTTT  450

seq1  GTTCTTTTGTTTTG-TTTTTGTCAGC-AAAGTTCTTATTGAATCACAAAG  498
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  GTTCTTTTGTTTTGTTTTTTGTCAGCAAAAGTTCTTATTGAATCACAAAG  500

seq1  AAAAAAAT-AATAATACC-AAAAAGTATAGCAAAAGAAAGTTCATTAGCA  546
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  AAAAAAATAAATAATACCAAAAAAGTATAGCAAAAGAAAGTTCATTAGCA  550

seq1  T-AAACACAGATTAGCCATG-TTTTAGGAAGCCTACATAAGTATCTTTTT  594
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAAAACACAGATTAGCCATGTTTTTAGGAAGCCTACATAAGTATCTTTTT  600

seq1  TTCCCTACCT-TCAATTTCCAACAGGATCTAT-ATTTTTCTAATATTTTT  642
      |||||||||| ||||||||||||||||||||| ||||||||||| |||||
seq2  TTCCCTACCTGTCAATTTCCAACAGGATCTATAATTTTTCTAATTTTTTT  650

seq1  CTTCACACATT-GATTTT-GAGGACTTAAATCAGTTTGAGAGGCTC-TAG  689
      ||||||||||| |||||| ||||||||||||||||||||||||||| |||
seq2  CTTCACACATTGGATTTTGGAGGACTTAAATCAGTTTGAGAGGCTCTTAG  700

seq1  T-GACTG  695
      | |||||
seq2  TGGACTG  707